Strain Fitness in Shewanella oneidensis MR-1 around SO4634

Experiment: Benzalkonium Chloride 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Benzalkonium Chloride 0.004 mg/ml
4,828,568	+				+0.6
4,828,568	+				-0.2
4,828,618	-				-0.1
4,828,636	+				-2.7
4,828,645	-				-0.9
4,828,647	+				+1.3
4,828,706	+				+0.1
4,828,816	+				+1.0
4,828,818	+				-0.6
4,828,818	+				+1.2
4,828,818	+				-1.9
4,828,824	-				-0.2
4,828,826	-				-1.7
4,828,826	-				-0.6
4,828,826	-				+0.4
4,828,833	+	ompR	SO4633	0.10	+0.5
4,828,837	+	ompR	SO4633	0.11	-2.2
4,828,844	+	ompR	SO4633	0.12	-0.3
4,828,845	-	ompR	SO4633	0.12	-0.9
4,828,852	-	ompR	SO4633	0.13	-0.8
4,828,863	+	ompR	SO4633	0.14	+0.7
4,828,919	+	ompR	SO4633	0.22	-0.6
4,828,925	+	ompR	SO4633	0.23	-1.0
4,828,933	-	ompR	SO4633	0.24	-0.9
4,828,933	-	ompR	SO4633	0.24	-0.3
4,828,933	-	ompR	SO4633	0.24	-0.1
4,828,943	-	ompR	SO4633	0.25	-0.0
4,828,980	+	ompR	SO4633	0.30	-0.1
4,828,980	+	ompR	SO4633	0.30	-0.2
4,828,980	+	ompR	SO4633	0.30	-1.2
4,828,988	-	ompR	SO4633	0.32	+0.2
4,828,988	-	ompR	SO4633	0.32	-1.1
4,828,988	-	ompR	SO4633	0.32	+0.2
4,828,988	-	ompR	SO4633	0.32	-0.6
4,828,988	-	ompR	SO4633	0.32	-0.1
4,829,217	+	ompR	SO4633	0.63	-0.7
4,829,225	+	ompR	SO4633	0.64	-0.5
4,829,225	-	ompR	SO4633	0.64	-0.3
4,829,231	+	ompR	SO4633	0.65	-1.4
4,829,239	+	ompR	SO4633	0.66	-3.6
4,829,239	+	ompR	SO4633	0.66	-0.1
4,829,373	+	ompR	SO4633	0.85	-0.4
4,829,374	-	ompR	SO4633	0.85	-0.2
4,829,424	+				-0.2
4,829,440	+				-1.4
4,829,499	+				+0.3
4,829,507	-				-1.3
4,829,511	+				-0.9
4,829,519	-				-0.6
4,829,519	-				-0.4
4,829,519	-				-0.5
4,829,593	-				-0.6
4,829,625	-				+0.3
4,829,666	-	envZ	SO4634	0.11	-0.5
4,829,763	-	envZ	SO4634	0.18	-1.3
4,829,768	-	envZ	SO4634	0.18	-0.2
4,829,793	+	envZ	SO4634	0.20	+0.6
4,829,820	+	envZ	SO4634	0.22	-1.7
4,829,893	-	envZ	SO4634	0.28	-0.5
4,829,901	+	envZ	SO4634	0.29	-1.3
4,829,929	-	envZ	SO4634	0.31	-1.4
4,829,929	-	envZ	SO4634	0.31	-0.3
4,829,941	+	envZ	SO4634	0.32	-2.6
4,829,956	+	envZ	SO4634	0.33	-0.0
4,829,956	+	envZ	SO4634	0.33	-0.2
4,829,956	+	envZ	SO4634	0.33	+0.3
4,829,964	-	envZ	SO4634	0.33	-1.8
4,829,999	+	envZ	SO4634	0.36	-0.2
4,830,012	+	envZ	SO4634	0.37	+0.3
4,830,180	+	envZ	SO4634	0.50	-0.1
4,830,180	+	envZ	SO4634	0.50	-0.4
4,830,180	+	envZ	SO4634	0.50	-0.3
4,830,180	+	envZ	SO4634	0.50	-0.3
4,830,188	-	envZ	SO4634	0.50	-0.5
4,830,188	-	envZ	SO4634	0.50	-2.5
4,830,230	-	envZ	SO4634	0.54	-0.3
4,830,232	+	envZ	SO4634	0.54	-0.1
4,830,240	-	envZ	SO4634	0.54	-1.1
4,830,240	-	envZ	SO4634	0.54	-0.7
4,830,266	+	envZ	SO4634	0.56	-2.2
4,830,300	+	envZ	SO4634	0.59	-1.3
4,830,406	-	envZ	SO4634	0.67	-0.7
4,830,452	-	envZ	SO4634	0.70	-0.6
4,830,462	-	envZ	SO4634	0.71	-0.5
4,830,512	-	envZ	SO4634	0.75	-1.3
4,830,687	-	envZ	SO4634	0.88	-1.4
4,830,687	-	envZ	SO4634	0.88	-0.8
4,830,705	-	envZ	SO4634	0.90	-0.5
4,830,716	+				-2.4
4,830,723	+				-1.3
4,830,724	-				-0.8
4,830,731	-				-0.6
4,830,787	+				+0.1
4,830,971	-				-0.5
4,831,004	-				+0.3
4,831,038	-				-0.4
4,831,096	-				-2.9
4,831,096	-				-0.0
4,831,151	+				-0.1
4,831,168	-		SO4635	0.11	-0.2
4,831,170	+		SO4635	0.11	+0.7
4,831,225	+		SO4635	0.14	-0.1
4,831,233	-		SO4635	0.14	-1.9
4,831,245	-		SO4635	0.15	+1.1
4,831,281	-		SO4635	0.16	+0.0
4,831,312	+		SO4635	0.18	-0.6
4,831,322	+		SO4635	0.18	+0.4
4,831,322	+		SO4635	0.18	+1.1
4,831,330	-		SO4635	0.19	-0.5
4,831,330	-		SO4635	0.19	-0.3
4,831,408	-		SO4635	0.23	-1.9
4,831,416	-		SO4635	0.23	+0.4
4,831,446	-		SO4635	0.25	+0.2
4,831,638	-		SO4635	0.34	-0.7
4,831,651	-		SO4635	0.35	+0.3