Experiment: Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tolR and SO2751 overlap by 1 nucleotides SO2751 and SO2752 overlap by 11 nucleotides SO2752 and SO2753 are separated by 169 nucleotides
SO2750: tolR - tolr protein (NCBI ptt file), at 2,871,567 to 2,872,001
tolR
SO2751: SO2751 - MotA/TolQ/ExbB proton channel family protein (NCBI ptt file), at 2,872,001 to 2,872,687
SO2751
SO2752: SO2752 - conserved hypothetical protein TIGR00051 (NCBI ptt file), at 2,872,677 to 2,873,078
SO2752
SO2753: SO2753 - prolyl endopeptidase (NCBI ptt file), at 2,873,248 to 2,875,431
SO2753
Position (kb)
2872
2873
2874 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2872.750 kb on - strand, within SO2752 at 2872.755 kb on - strand, within SO2752 at 2872.755 kb on - strand, within SO2752 at 2872.763 kb on - strand, within SO2752 at 2872.765 kb on - strand, within SO2752 at 2872.768 kb on - strand, within SO2752 at 2872.788 kb on - strand, within SO2752 at 2872.836 kb on - strand, within SO2752 at 2872.956 kb on + strand, within SO2752 at 2872.978 kb on + strand, within SO2752 at 2873.115 kb on + strand at 2873.350 kb on + strand at 2873.360 kb on + strand at 2873.368 kb on - strand at 2873.434 kb on + strand at 2873.435 kb on - strand at 2873.437 kb on + strand at 2873.445 kb on - strand at 2873.497 kb on - strand, within SO2753 at 2873.555 kb on - strand, within SO2753 at 2873.561 kb on + strand, within SO2753 at 2873.628 kb on + strand, within SO2753 at 2873.646 kb on - strand, within SO2753 at 2873.658 kb on + strand, within SO2753 at 2873.658 kb on + strand, within SO2753 at 2873.658 kb on + strand, within SO2753 at 2873.666 kb on - strand, within SO2753 at 2873.666 kb on - strand, within SO2753 at 2873.684 kb on - strand, within SO2753 at 2873.998 kb on + strand, within SO2753 at 2874.043 kb on - strand, within SO2753 at 2874.043 kb on - strand, within SO2753
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.004 mg/ml remove 2,872,750 - SO2752 0.18 -1.8 2,872,755 - SO2752 0.19 +0.4 2,872,755 - SO2752 0.19 -1.8 2,872,763 - SO2752 0.21 -0.5 2,872,765 - SO2752 0.22 -1.0 2,872,768 - SO2752 0.23 -0.2 2,872,788 - SO2752 0.28 -1.1 2,872,836 - SO2752 0.40 -1.7 2,872,956 + SO2752 0.69 -2.0 2,872,978 + SO2752 0.75 +0.2 2,873,115 + -2.4 2,873,350 + +0.1 2,873,360 + +0.6 2,873,368 - -0.1 2,873,434 + -0.3 2,873,435 - +0.8 2,873,437 + +0.3 2,873,445 - -0.0 2,873,497 - SO2753 0.11 +0.2 2,873,555 - SO2753 0.14 +0.2 2,873,561 + SO2753 0.14 +0.7 2,873,628 + SO2753 0.17 +1.3 2,873,646 - SO2753 0.18 +0.9 2,873,658 + SO2753 0.19 -0.1 2,873,658 + SO2753 0.19 -0.3 2,873,658 + SO2753 0.19 -1.0 2,873,666 - SO2753 0.19 +0.2 2,873,666 - SO2753 0.19 -0.6 2,873,684 - SO2753 0.20 +0.9 2,873,998 + SO2753 0.34 +2.3 2,874,043 - SO2753 0.36 -0.7 2,874,043 - SO2753 0.36 -0.7
Or see this region's nucleotide sequence