Strain Fitness in Shewanella oneidensis MR-1 around SO2728

Experiment: Benzalkonium Chloride 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Benzalkonium Chloride 0.004 mg/ml
2,843,665	-		SO2726	0.70	-2.6
2,843,665	-		SO2726	0.70	-0.1
2,843,804	-		SO2726	0.89	+0.2
2,844,012	-		SO2727	0.12	-2.4
2,844,216	+		SO2727	0.70	-0.1
2,844,438	+				+2.5
2,844,478	+				+0.4
2,844,486	-				+0.6
2,844,662	-				+0.6
2,844,886	-	htpX	SO2728	0.28	+0.7
2,844,921	+	htpX	SO2728	0.32	+1.1
2,844,921	+	htpX	SO2728	0.32	-0.1
2,844,921	+	htpX	SO2728	0.32	+1.5
2,845,072	-	htpX	SO2728	0.49	-0.1
2,845,091	+	htpX	SO2728	0.51	+0.1
2,845,176	+	htpX	SO2728	0.61	+0.2
2,845,194	-	htpX	SO2728	0.63	-0.4
2,845,294	-	htpX	SO2728	0.75	+0.3
2,845,324	-	htpX	SO2728	0.78	+0.8
2,845,401	+	htpX	SO2728	0.87	+1.1
2,845,472	+				+0.0
2,845,472	+				+0.3
2,845,472	+				-0.3
2,845,472	+				+0.8
2,845,480	-				-0.1
2,845,506	+				-0.6
2,845,514	-				+0.3
2,845,514	-				-0.5
2,845,644	+				-0.1
2,845,644	+				+0.3
2,845,652	-				-1.4
2,845,669	-				+1.3
2,845,805	+				+0.8
2,845,812	+				+0.0
2,845,813	-				+0.1
2,845,820	-				+0.6
2,845,825	-				-0.5
2,845,825	-				+0.2
2,845,835	-				+0.3
2,845,895	-	pepE	SO2730	0.14	+0.2
2,846,146	+	pepE	SO2730	0.49	+1.0
2,846,154	-	pepE	SO2730	0.50	+0.5
2,846,154	-	pepE	SO2730	0.50	-0.1
2,846,169	-	pepE	SO2730	0.52	+0.9
2,846,225	-	pepE	SO2730	0.60	-0.4
2,846,240	+	pepE	SO2730	0.62	-0.0
2,846,248	-	pepE	SO2730	0.63	+0.6
2,846,375	+	pepE	SO2730	0.81	+2.6
2,846,383	-	pepE	SO2730	0.82	-0.7
2,846,383	-	pepE	SO2730	0.82	-0.6
2,846,393	-	pepE	SO2730	0.84	+0.2
2,846,401	+	pepE	SO2730	0.85	-0.1
2,846,409	-	pepE	SO2730	0.86	-0.0
2,846,477	-				-0.0