Strain Fitness in Shewanella oneidensis MR-1 around SO2308

Experiment: Benzalkonium Chloride 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO2306 and lolA are separated by 69 nucleotideslolA and SO2308 are separated by 2 nucleotidesSO2308 and crcB overlap by 8 nucleotidescrcB and serS are separated by 18 nucleotides SO2306: SO2306 - cell division protein FtsK, putative (NCBI ptt file), at 2,417,093 to 2,419,828 SO2306 SO2307: lolA - outer membrane lipoprotein carrier protein LolA (NCBI ptt file), at 2,419,898 to 2,420,518 lolA SO2308: SO2308 - ATPase, AAA family (NCBI ptt file), at 2,420,521 to 2,421,858 SO2308 SO2309: crcB - crcB protein (NCBI ptt file), at 2,421,851 to 2,422,225 crcB SO2310: serS - seryl-tRNA synthetase (NCBI ptt file), at 2,422,244 to 2,423,530 serS Position (kb) 2420 2421 2422Strain fitness (log2 ratio) -1 0 1 2at 2419.526 kb on + strand, within SO2306at 2420.649 kb on - strandat 2421.046 kb on - strand, within SO2308at 2421.190 kb on - strand, within SO2308at 2421.549 kb on + strand, within SO2308at 2421.612 kb on - strand, within SO2308at 2421.689 kb on + strand, within SO2308at 2421.699 kb on + strand, within SO2308at 2421.826 kb on + strandat 2421.867 kb on - strandat 2421.874 kb on - strandat 2421.877 kb on + strandat 2421.995 kb on + strand, within crcB

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.004 mg/ml
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2,419,526 + SO2306 0.89 -1.2
2,420,649 - -1.0
2,421,046 - SO2308 0.39 +0.1
2,421,190 - SO2308 0.50 -0.5
2,421,549 + SO2308 0.77 +1.3
2,421,612 - SO2308 0.82 +1.0
2,421,689 + SO2308 0.87 -0.6
2,421,699 + SO2308 0.88 +0.9
2,421,826 + -0.6
2,421,867 - -1.0
2,421,874 - +1.0
2,421,877 + -0.8
2,421,995 + crcB SO2309 0.38 +1.9

Or see this region's nucleotide sequence