Strain Fitness in Shewanella oneidensis MR-1 around SO1109
Experiment: Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Benzalkonium Chloride 0.004 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,152,137 | + | +0.7 | |||
1,153,248 | + | +1.0 | |||
1,153,486 | - | +0.8 | |||
1,153,817 | + | bfr2 | SO1111 | 0.21 | -0.1 |
1,153,835 | + | bfr2 | SO1111 | 0.24 | +0.5 |
1,153,870 | + | bfr2 | SO1111 | 0.32 | +0.8 |
1,153,882 | + | bfr2 | SO1111 | 0.34 | -0.4 |
1,153,890 | - | bfr2 | SO1111 | 0.36 | -1.5 |
1,153,917 | + | bfr2 | SO1111 | 0.42 | +1.2 |
1,154,016 | - | bfr2 | SO1111 | 0.63 | +1.3 |
1,154,029 | + | bfr2 | SO1111 | 0.65 | +0.1 |
1,154,029 | + | bfr2 | SO1111 | 0.65 | +0.4 |
1,154,029 | + | bfr2 | SO1111 | 0.65 | -0.4 |
1,154,029 | + | bfr2 | SO1111 | 0.65 | +0.6 |
1,154,029 | + | bfr2 | SO1111 | 0.65 | +0.3 |
1,154,029 | + | bfr2 | SO1111 | 0.65 | +0.5 |
1,154,029 | + | bfr2 | SO1111 | 0.65 | -0.2 |
1,154,029 | + | bfr2 | SO1111 | 0.65 | -0.3 |
1,154,029 | + | bfr2 | SO1111 | 0.65 | +0.5 |
1,154,037 | - | bfr2 | SO1111 | 0.67 | -0.3 |
1,154,037 | - | bfr2 | SO1111 | 0.67 | +1.0 |
1,154,037 | - | bfr2 | SO1111 | 0.67 | -0.5 |
1,154,037 | - | bfr2 | SO1111 | 0.67 | -1.9 |
1,154,037 | - | bfr2 | SO1111 | 0.67 | -1.0 |
1,154,037 | - | bfr2 | SO1111 | 0.67 | +0.6 |
1,154,037 | - | bfr2 | SO1111 | 0.67 | -0.7 |
1,154,054 | + | bfr2 | SO1111 | 0.71 | -0.5 |
1,154,193 | - | +1.0 |
Or see this region's nucleotide sequence