Experiment: Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0676 and SO0677 are separated by 2 nucleotides SO0677 and SO0678 overlap by 1 nucleotides SO0678 and SO0679 are separated by 28 nucleotides SO0679 and SO0680 are separated by 119 nucleotides
SO0676: SO0676 - conserved hypothetical protein (NCBI ptt file), at 694,394 to 694,840
SO0676
SO0677: SO0677 - conserved hypothetical protein (NCBI ptt file), at 694,843 to 695,283
SO0677
SO0678: SO0678 - hypothetical protein (NCBI ptt file), at 695,283 to 695,726
SO0678
SO0679: SO0679 - hypothetical protein (NCBI ptt file), at 695,755 to 696,501
SO0679
SO0680: SO0680 - hypothetical protein (NCBI ptt file), at 696,621 to 700,547
SO0680
Position (kb) 695
696
697 Strain fitness (log2 ratio) -2
-1
0
1
2 at 694.785 kb on - strand, within SO0676 at 694.862 kb on - strand at 694.872 kb on - strand at 694.899 kb on + strand, within SO0677 at 694.899 kb on + strand, within SO0677 at 694.907 kb on - strand, within SO0677 at 694.907 kb on - strand, within SO0677 at 694.909 kb on - strand, within SO0677 at 694.921 kb on + strand, within SO0677 at 695.102 kb on + strand, within SO0677 at 695.102 kb on + strand, within SO0677 at 695.110 kb on - strand, within SO0677 at 695.110 kb on - strand, within SO0677 at 695.110 kb on - strand, within SO0677 at 695.157 kb on + strand, within SO0677 at 695.157 kb on + strand, within SO0677 at 695.182 kb on - strand, within SO0677 at 695.182 kb on - strand, within SO0677 at 695.266 kb on + strand at 695.280 kb on - strand at 695.322 kb on + strand at 695.322 kb on + strand at 695.330 kb on - strand, within SO0678 at 695.330 kb on - strand, within SO0678 at 695.406 kb on - strand, within SO0678 at 695.406 kb on - strand, within SO0678 at 695.459 kb on + strand, within SO0678 at 695.499 kb on - strand, within SO0678 at 695.501 kb on + strand, within SO0678 at 695.509 kb on - strand, within SO0678 at 695.509 kb on - strand, within SO0678 at 695.514 kb on + strand, within SO0678 at 695.561 kb on - strand, within SO0678 at 695.591 kb on - strand, within SO0678 at 695.602 kb on - strand, within SO0678 at 695.636 kb on + strand, within SO0678 at 695.636 kb on + strand, within SO0678 at 695.644 kb on - strand, within SO0678 at 695.677 kb on + strand, within SO0678 at 695.678 kb on + strand, within SO0678 at 695.917 kb on + strand, within SO0679 at 695.924 kb on - strand, within SO0679 at 695.925 kb on - strand, within SO0679 at 696.035 kb on + strand, within SO0679 at 696.055 kb on + strand, within SO0679 at 696.063 kb on - strand, within SO0679 at 696.086 kb on - strand, within SO0679 at 696.113 kb on + strand, within SO0679 at 696.146 kb on + strand, within SO0679 at 696.146 kb on + strand, within SO0679 at 696.146 kb on + strand, within SO0679 at 696.146 kb on + strand, within SO0679 at 696.146 kb on + strand, within SO0679 at 696.146 kb on + strand, within SO0679 at 696.146 kb on + strand, within SO0679 at 696.146 kb on + strand, within SO0679 at 696.146 kb on + strand, within SO0679 at 696.146 kb on + strand, within SO0679 at 696.146 kb on + strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.154 kb on - strand, within SO0679 at 696.179 kb on - strand, within SO0679 at 696.196 kb on - strand, within SO0679 at 696.216 kb on + strand, within SO0679 at 696.242 kb on + strand, within SO0679 at 696.255 kb on - strand, within SO0679 at 696.260 kb on - strand, within SO0679 at 696.295 kb on + strand, within SO0679 at 696.303 kb on - strand, within SO0679 at 696.394 kb on + strand, within SO0679 at 696.535 kb on - strand at 696.753 kb on + strand at 696.837 kb on - strand at 696.872 kb on - strand at 696.897 kb on + strand at 696.900 kb on - strand at 696.921 kb on - strand at 696.928 kb on + strand at 696.929 kb on - strand at 696.977 kb on + strand at 696.978 kb on + strand at 697.023 kb on + strand, within SO0680 at 697.036 kb on + strand, within SO0680 at 697.108 kb on + strand, within SO0680 at 697.108 kb on + strand, within SO0680 at 697.108 kb on + strand, within SO0680 at 697.108 kb on + strand, within SO0680 at 697.108 kb on + strand, within SO0680 at 697.108 kb on + strand, within SO0680 at 697.108 kb on + strand, within SO0680 at 697.108 kb on + strand, within SO0680 at 697.108 kb on + strand, within SO0680 at 697.108 kb on + strand, within SO0680 at 697.116 kb on - strand, within SO0680 at 697.116 kb on - strand, within SO0680 at 697.116 kb on - strand, within SO0680 at 697.183 kb on + strand, within SO0680 at 697.199 kb on + strand, within SO0680 at 697.236 kb on - strand, within SO0680 at 697.282 kb on + strand, within SO0680 at 697.282 kb on + strand, within SO0680 at 697.283 kb on - strand, within SO0680 at 697.290 kb on - strand, within SO0680 at 697.387 kb on + strand, within SO0680 at 697.395 kb on - strand, within SO0680 at 697.416 kb on - strand, within SO0680 at 697.475 kb on - strand, within SO0680
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.004 mg/ml remove 694,785 - SO0676 0.87 +0.2 694,862 - +0.9 694,872 - +0.4 694,899 + SO0677 0.13 +0.0 694,899 + SO0677 0.13 +0.8 694,907 - SO0677 0.15 +0.5 694,907 - SO0677 0.15 -0.2 694,909 - SO0677 0.15 +2.3 694,921 + SO0677 0.18 -0.5 695,102 + SO0677 0.59 +0.5 695,102 + SO0677 0.59 +0.2 695,110 - SO0677 0.61 -0.3 695,110 - SO0677 0.61 +0.9 695,110 - SO0677 0.61 -0.1 695,157 + SO0677 0.71 -0.1 695,157 + SO0677 0.71 +0.0 695,182 - SO0677 0.77 -0.0 695,182 - SO0677 0.77 +0.7 695,266 + +0.8 695,280 - +1.3 695,322 + +1.7 695,322 + -1.0 695,330 - SO0678 0.11 +0.2 695,330 - SO0678 0.11 -1.7 695,406 - SO0678 0.28 +0.1 695,406 - SO0678 0.28 -1.3 695,459 + SO0678 0.40 -1.8 695,499 - SO0678 0.49 +0.0 695,501 + SO0678 0.49 +0.4 695,509 - SO0678 0.51 +0.4 695,509 - SO0678 0.51 -0.0 695,514 + SO0678 0.52 -0.8 695,561 - SO0678 0.63 -0.7 695,591 - SO0678 0.69 +0.2 695,602 - SO0678 0.72 -0.4 695,636 + SO0678 0.80 +0.4 695,636 + SO0678 0.80 +0.5 695,644 - SO0678 0.81 -0.3 695,677 + SO0678 0.89 -1.8 695,678 + SO0678 0.89 +0.0 695,917 + SO0679 0.22 +0.9 695,924 - SO0679 0.23 +0.6 695,925 - SO0679 0.23 -0.2 696,035 + SO0679 0.37 +1.0 696,055 + SO0679 0.40 -0.2 696,063 - SO0679 0.41 +1.1 696,086 - SO0679 0.44 -0.5 696,113 + SO0679 0.48 -1.7 696,146 + SO0679 0.52 -0.3 696,146 + SO0679 0.52 +0.8 696,146 + SO0679 0.52 +0.7 696,146 + SO0679 0.52 +0.4 696,146 + SO0679 0.52 +0.6 696,146 + SO0679 0.52 -0.4 696,146 + SO0679 0.52 -0.5 696,146 + SO0679 0.52 +1.2 696,146 + SO0679 0.52 +0.6 696,146 + SO0679 0.52 -0.4 696,146 + SO0679 0.52 +0.4 696,154 - SO0679 0.53 -0.0 696,154 - SO0679 0.53 -1.2 696,154 - SO0679 0.53 +1.6 696,154 - SO0679 0.53 +1.3 696,154 - SO0679 0.53 +1.0 696,154 - SO0679 0.53 +0.3 696,154 - SO0679 0.53 -0.2 696,154 - SO0679 0.53 +0.1 696,154 - SO0679 0.53 +1.0 696,154 - SO0679 0.53 -0.3 696,154 - SO0679 0.53 +0.3 696,154 - SO0679 0.53 +0.3 696,154 - SO0679 0.53 +0.4 696,154 - SO0679 0.53 -0.7 696,154 - SO0679 0.53 +1.2 696,179 - SO0679 0.57 +1.0 696,196 - SO0679 0.59 +0.2 696,216 + SO0679 0.62 -0.2 696,242 + SO0679 0.65 +1.7 696,255 - SO0679 0.67 -0.5 696,260 - SO0679 0.68 +0.1 696,295 + SO0679 0.72 -0.9 696,303 - SO0679 0.73 -0.7 696,394 + SO0679 0.86 +1.0 696,535 - -0.7 696,753 + -1.2 696,837 - +0.5 696,872 - -1.7 696,897 + +0.6 696,900 - +0.5 696,921 - -0.2 696,928 + -0.5 696,929 - -1.2 696,977 + +0.5 696,978 + +0.2 697,023 + SO0680 0.10 +0.1 697,036 + SO0680 0.11 -0.1 697,108 + SO0680 0.12 +0.6 697,108 + SO0680 0.12 -0.8 697,108 + SO0680 0.12 +0.6 697,108 + SO0680 0.12 +0.1 697,108 + SO0680 0.12 -0.3 697,108 + SO0680 0.12 +0.4 697,108 + SO0680 0.12 -0.2 697,108 + SO0680 0.12 +0.5 697,108 + SO0680 0.12 -0.7 697,108 + SO0680 0.12 -0.2 697,116 - SO0680 0.13 -0.1 697,116 - SO0680 0.13 -0.3 697,116 - SO0680 0.13 +1.6 697,183 + SO0680 0.14 -0.2 697,199 + SO0680 0.15 -0.5 697,236 - SO0680 0.16 +0.6 697,282 + SO0680 0.17 -0.5 697,282 + SO0680 0.17 -0.7 697,283 - SO0680 0.17 +1.1 697,290 - SO0680 0.17 +0.3 697,387 + SO0680 0.20 -1.1 697,395 - SO0680 0.20 +0.4 697,416 - SO0680 0.20 +1.4 697,475 - SO0680 0.22 +0.6
Or see this region's nucleotide sequence