Experiment: Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt purH and SO0443 are separated by 335 nucleotides SO0443 and SO0444 overlap by 1 nucleotides SO0444 and SO0445 are separated by 105 nucleotides
SO0442: purH - phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (NCBI ptt file), at 469,791 to 471,422
purH
SO0443: SO0443 - transcriptional regulator, MerR family (NCBI ptt file), at 471,758 to 472,249
SO0443
SO0444: SO0444 - hypothetical protein (NCBI ptt file), at 472,249 to 473,724
SO0444
SO0445: SO0445 - hflC protein, putative (NCBI ptt file), at 473,830 to 474,720
SO0445
Position (kb) 472
473
474 Strain fitness (log2 ratio) -2
-1
0
1
2 at 471.263 kb on + strand at 471.285 kb on + strand at 471.314 kb on + strand at 471.314 kb on + strand at 471.314 kb on + strand at 471.314 kb on + strand at 471.383 kb on - strand at 471.420 kb on + strand at 471.612 kb on + strand at 471.676 kb on + strand at 471.715 kb on + strand at 471.742 kb on + strand at 471.757 kb on - strand at 471.757 kb on - strand at 471.757 kb on - strand at 471.801 kb on - strand at 471.879 kb on - strand, within SO0443 at 471.879 kb on - strand, within SO0443 at 471.891 kb on + strand, within SO0443 at 471.993 kb on + strand, within SO0443 at 472.006 kb on + strand, within SO0443 at 472.014 kb on - strand, within SO0443 at 472.017 kb on + strand, within SO0443 at 472.286 kb on - strand at 472.383 kb on + strand at 472.391 kb on - strand at 472.456 kb on - strand, within SO0444 at 472.621 kb on + strand, within SO0444 at 472.657 kb on + strand, within SO0444 at 472.698 kb on - strand, within SO0444 at 472.701 kb on + strand, within SO0444 at 472.709 kb on - strand, within SO0444 at 472.711 kb on + strand, within SO0444 at 472.777 kb on + strand, within SO0444 at 472.785 kb on - strand, within SO0444 at 472.963 kb on + strand, within SO0444 at 472.964 kb on + strand, within SO0444 at 472.965 kb on + strand, within SO0444 at 472.983 kb on - strand, within SO0444 at 473.001 kb on - strand, within SO0444 at 473.088 kb on + strand, within SO0444 at 473.202 kb on - strand, within SO0444 at 473.207 kb on + strand, within SO0444 at 473.346 kb on - strand, within SO0444 at 473.348 kb on - strand, within SO0444 at 473.418 kb on - strand, within SO0444 at 473.490 kb on + strand, within SO0444 at 473.490 kb on + strand, within SO0444 at 473.527 kb on - strand, within SO0444 at 473.570 kb on + strand, within SO0444 at 473.578 kb on - strand at 473.602 kb on + strand at 473.653 kb on - strand at 473.653 kb on - strand at 473.793 kb on + strand at 473.923 kb on - strand, within SO0445 at 474.047 kb on + strand, within SO0445 at 474.123 kb on - strand, within SO0445 at 474.195 kb on + strand, within SO0445 at 474.195 kb on + strand, within SO0445 at 474.203 kb on - strand, within SO0445 at 474.203 kb on - strand, within SO0445 at 474.203 kb on - strand, within SO0445 at 474.203 kb on - strand, within SO0445 at 474.213 kb on - strand, within SO0445 at 474.217 kb on + strand, within SO0445 at 474.268 kb on - strand, within SO0445 at 474.279 kb on - strand, within SO0445 at 474.427 kb on - strand, within SO0445 at 474.488 kb on + strand, within SO0445 at 474.488 kb on - strand, within SO0445 at 474.488 kb on - strand, within SO0445 at 474.606 kb on + strand, within SO0445 at 474.614 kb on - strand, within SO0445 at 474.665 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.004 mg/ml remove 471,263 + -0.7 471,285 + +0.2 471,314 + +1.8 471,314 + -0.0 471,314 + +1.2 471,314 + -0.0 471,383 - +0.8 471,420 + +0.0 471,612 + +0.6 471,676 + -0.8 471,715 + -2.1 471,742 + -0.5 471,757 - -0.6 471,757 - -0.0 471,757 - -0.7 471,801 - -0.3 471,879 - SO0443 0.25 +0.5 471,879 - SO0443 0.25 -0.0 471,891 + SO0443 0.27 +1.7 471,993 + SO0443 0.48 +1.0 472,006 + SO0443 0.50 +0.9 472,014 - SO0443 0.52 +0.5 472,017 + SO0443 0.53 -0.6 472,286 - +0.6 472,383 + +0.4 472,391 - +1.3 472,456 - SO0444 0.14 +1.1 472,621 + SO0444 0.25 +0.7 472,657 + SO0444 0.28 +0.0 472,698 - SO0444 0.30 -1.0 472,701 + SO0444 0.31 -0.3 472,709 - SO0444 0.31 +0.4 472,711 + SO0444 0.31 +1.3 472,777 + SO0444 0.36 -0.7 472,785 - SO0444 0.36 -0.4 472,963 + SO0444 0.48 -1.3 472,964 + SO0444 0.48 +0.1 472,965 + SO0444 0.49 -0.7 472,983 - SO0444 0.50 -0.2 473,001 - SO0444 0.51 +0.3 473,088 + SO0444 0.57 +0.2 473,202 - SO0444 0.65 -1.3 473,207 + SO0444 0.65 -0.7 473,346 - SO0444 0.74 -0.7 473,348 - SO0444 0.74 -0.8 473,418 - SO0444 0.79 +0.4 473,490 + SO0444 0.84 -1.4 473,490 + SO0444 0.84 +0.2 473,527 - SO0444 0.87 -2.3 473,570 + SO0444 0.89 -0.5 473,578 - -0.7 473,602 + -0.3 473,653 - -1.5 473,653 - -0.3 473,793 + +0.7 473,923 - SO0445 0.10 -0.6 474,047 + SO0445 0.24 -0.4 474,123 - SO0445 0.33 +1.9 474,195 + SO0445 0.41 +1.0 474,195 + SO0445 0.41 -0.2 474,203 - SO0445 0.42 +0.1 474,203 - SO0445 0.42 +0.8 474,203 - SO0445 0.42 -0.4 474,203 - SO0445 0.42 -0.3 474,213 - SO0445 0.43 -0.3 474,217 + SO0445 0.43 +1.2 474,268 - SO0445 0.49 +0.3 474,279 - SO0445 0.50 +2.0 474,427 - SO0445 0.67 -0.1 474,488 + SO0445 0.74 -0.4 474,488 - SO0445 0.74 +1.3 474,488 - SO0445 0.74 +0.5 474,606 + SO0445 0.87 -0.1 474,614 - SO0445 0.88 -0.2 474,665 + -0.4
Or see this region's nucleotide sequence