Strain Fitness in Shewanella oneidensis MR-1 around SO0028

Experiment: Benzalkonium Chloride 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Benzalkonium Chloride 0.004 mg/ml
31,269	+		SO0026	0.39	-3.3
31,338	-		SO0026	0.62	-4.4
31,388	+		SO0026	0.78	-1.1
31,516	+				-3.8
31,516	+				-0.4
31,589	+				+0.8
31,673	+				-0.3
31,729	+		SO0027	0.13	+0.4
31,734	+		SO0027	0.14	+0.4
31,737	-		SO0027	0.15	+0.2
31,737	-		SO0027	0.15	+0.9
31,744	+		SO0027	0.16	-0.4
31,752	-		SO0027	0.17	+2.8
31,752	-		SO0027	0.17	+0.4
31,759	-		SO0027	0.19	-1.3
31,764	+		SO0027	0.19	+0.5
31,823	+		SO0027	0.30	-2.2
31,844	-		SO0027	0.34	-2.8
31,856	-		SO0027	0.36	+0.1
31,875	+		SO0027	0.39	-0.9
31,881	+		SO0027	0.41	-0.6
31,884	+		SO0027	0.41	+0.5
31,892	-		SO0027	0.43	+0.3
31,898	-		SO0027	0.44	-0.5
31,936	+		SO0027	0.50	+0.2
32,001	+		SO0027	0.62	-0.0
32,016	+		SO0027	0.65	+0.1
32,051	+		SO0027	0.71	+1.2
32,059	-		SO0027	0.73	+0.2
32,061	+		SO0027	0.73	+0.5
32,069	-		SO0027	0.74	-1.3
32,167	-				-0.2
32,172	+				+0.2
32,175	+				+0.3
32,175	+				+0.2
32,276	+				-1.7
32,276	+				-0.7
32,284	-				-0.0
32,284	-				-0.9
32,322	+				-0.2
32,366	-				+0.3
32,389	+				-1.4
32,403	-	trkH-2	SO0028	0.10	-1.7
32,403	-	trkH-2	SO0028	0.10	-0.2
32,406	+	trkH-2	SO0028	0.11	-1.0
32,406	+	trkH-2	SO0028	0.11	-1.6
32,419	-	trkH-2	SO0028	0.12	-2.2
32,450	+	trkH-2	SO0028	0.14	-1.3
32,450	+	trkH-2	SO0028	0.14	-0.7
32,450	+	trkH-2	SO0028	0.14	+0.0
32,458	-	trkH-2	SO0028	0.14	-2.0
32,458	-	trkH-2	SO0028	0.14	-0.7
32,468	-	trkH-2	SO0028	0.15	-1.5
32,478	-	trkH-2	SO0028	0.16	+0.3
32,509	+	trkH-2	SO0028	0.18	-1.7
32,509	+	trkH-2	SO0028	0.18	+0.2
32,509	+	trkH-2	SO0028	0.18	-0.4
32,509	+	trkH-2	SO0028	0.18	-3.6
32,517	-	trkH-2	SO0028	0.18	-1.6
32,517	-	trkH-2	SO0028	0.18	-1.2
32,517	-	trkH-2	SO0028	0.18	-0.5
32,517	-	trkH-2	SO0028	0.18	-0.8
32,517	-	trkH-2	SO0028	0.18	+0.3
32,552	-	trkH-2	SO0028	0.21	-0.2
32,558	-	trkH-2	SO0028	0.21	-2.1
32,655	-	trkH-2	SO0028	0.28	-1.0
32,668	+	trkH-2	SO0028	0.29	-0.3
32,730	+	trkH-2	SO0028	0.33	-0.7
32,747	+	trkH-2	SO0028	0.34	-1.4
32,798	-	trkH-2	SO0028	0.38	-0.9
32,818	+	trkH-2	SO0028	0.39	-1.9
32,890	-	trkH-2	SO0028	0.44	-1.1
32,891	-	trkH-2	SO0028	0.44	-1.7
32,891	-	trkH-2	SO0028	0.44	-0.8
32,900	+	trkH-2	SO0028	0.45	-0.9
32,908	+	trkH-2	SO0028	0.45	-1.5
32,908	-	trkH-2	SO0028	0.45	-0.6
32,935	+	trkH-2	SO0028	0.47	-1.1
32,940	+	trkH-2	SO0028	0.48	-0.3
32,948	-	trkH-2	SO0028	0.48	-0.4
32,948	-	trkH-2	SO0028	0.48	-0.9
32,950	-	trkH-2	SO0028	0.48	-0.9
32,988	-	trkH-2	SO0028	0.51	+0.7
33,068	+	trkH-2	SO0028	0.57	-1.2
33,075	+	trkH-2	SO0028	0.57	+0.8
33,083	-	trkH-2	SO0028	0.58	-0.4
33,218	-	trkH-2	SO0028	0.67	-1.0
33,235	+	trkH-2	SO0028	0.68	+1.4
33,235	+	trkH-2	SO0028	0.68	-0.8
33,243	-	trkH-2	SO0028	0.69	-3.2
33,243	-	trkH-2	SO0028	0.69	-2.6
33,243	-	trkH-2	SO0028	0.69	-1.6
33,245	+	trkH-2	SO0028	0.69	-1.1
33,283	+	trkH-2	SO0028	0.71	-0.4
33,327	+	trkH-2	SO0028	0.74	-0.7
33,366	-	trkH-2	SO0028	0.77	+0.2
33,424	+	trkH-2	SO0028	0.81	+0.9
33,424	+	trkH-2	SO0028	0.81	-0.5
33,424	+	trkH-2	SO0028	0.81	-0.4
33,432	-	trkH-2	SO0028	0.82	-0.4
33,502	+	trkH-2	SO0028	0.87	-0.2
33,523	-	trkH-2	SO0028	0.88	-1.8
33,571	+				-1.3
33,582	-				-0.0
33,629	+				-1.3
33,629	+				+0.3
33,637	-				-0.7
33,637	-				+0.3
33,644	-				+0.4
33,691	+				-1.2
33,704	-				-3.0
33,780	-				-0.1
33,911	-	trkA	SO0029	0.15	-1.7
33,913	+	trkA	SO0029	0.15	-0.9
33,943	+	trkA	SO0029	0.17	-0.7
34,621	+	trkA	SO0029	0.65	-1.7