Strain Fitness in Shewanella oneidensis MR-1 around SO_2142

Experiment: Benzalkonium Chloride 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Benzalkonium Chloride 0.004 mg/ml
2,248,403	+		SO_2142	0.18	+0.3
2,248,403	+		SO_2142	0.18	+0.1
2,248,411	-		SO_2142	0.18	-0.4
2,248,432	+		SO_2142	0.20	+0.6
2,248,451	-		SO_2142	0.22	+0.4
2,248,496	+		SO_2142	0.26	-0.8
2,248,496	+		SO_2142	0.26	+2.0
2,248,519	+		SO_2142	0.27	+1.2
2,248,527	-		SO_2142	0.28	+0.7
2,248,546	-		SO_2142	0.30	+1.0
2,248,553	+		SO_2142	0.30	+0.8
2,248,553	+		SO_2142	0.30	+0.6
2,248,553	+		SO_2142	0.30	-0.4
2,248,553	+		SO_2142	0.30	+0.6
2,248,553	+		SO_2142	0.30	+0.1
2,248,553	+		SO_2142	0.30	-0.2
2,248,553	+		SO_2142	0.30	+1.1
2,248,561	-		SO_2142	0.31	-0.6
2,248,561	-		SO_2142	0.31	-0.2
2,248,561	-		SO_2142	0.31	-0.3
2,248,561	-		SO_2142	0.31	-0.4
2,248,561	-		SO_2142	0.31	+0.0
2,248,561	-		SO_2142	0.31	+0.2
2,248,561	-		SO_2142	0.31	+0.0
2,248,657	+		SO_2142	0.39	-0.0
2,248,657	+		SO_2142	0.39	-0.3
2,248,657	+		SO_2142	0.39	-0.3
2,248,665	-		SO_2142	0.40	+0.3
2,248,665	-		SO_2142	0.40	+0.1
2,248,753	-		SO_2142	0.47	-1.3
2,248,754	-		SO_2142	0.47	-0.2
2,248,754	-		SO_2142	0.47	+0.9
2,248,833	+		SO_2142	0.54	+0.6
2,248,924	-		SO_2142	0.61	-0.3
2,248,938	+		SO_2142	0.62	-0.3
2,248,970	-		SO_2142	0.65	-1.1
2,249,100	+		SO_2142	0.76	-1.0
2,249,108	-		SO_2142	0.76	-0.4
2,249,115	+		SO_2142	0.77	+0.9
2,249,152	-		SO_2142	0.80	-0.1
2,249,194	-		SO_2142	0.84	-0.2
2,249,204	+		SO_2142	0.84	-1.3
2,249,239	-		SO_2142	0.87	+0.1
2,249,297	-				-0.6
2,249,306	-				+1.4
2,249,344	+				+0.8
2,249,510	+				-0.1
2,249,518	-				-0.2
2,249,564	-				-1.3
2,249,568	+				-0.8
2,249,683	+		SO2143	0.14	-1.3
2,249,683	+		SO2143	0.14	-2.5
2,249,691	-		SO2143	0.15	-0.0
2,249,797	-		SO2143	0.21	-0.1
2,249,834	-		SO2143	0.23	-0.1
2,249,925	-		SO2143	0.29	-1.0
2,250,078	+		SO2143	0.38	-0.4
2,250,080	+		SO2143	0.38	-0.8
2,250,086	-		SO2143	0.38	+0.2
2,250,088	-		SO2143	0.38	+1.3
2,250,088	-		SO2143	0.38	+0.3
2,250,103	-		SO2143	0.39	+0.0
2,250,103	-		SO2143	0.39	-0.0
2,250,184	+		SO2143	0.44	+0.8
2,250,353	+		SO2143	0.54	-0.4