Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08600 and PGA1_c08610 are separated by 261 nucleotides PGA1_c08610 and PGA1_c08620 are separated by 335 nucleotides PGA1_c08620 and PGA1_c08630 are separated by 144 nucleotides PGA1_c08630 and PGA1_c08640 are separated by 141 nucleotides
PGA1_c08600: PGA1_c08600 - diguanylate cyclase (GGDEF) domain-containing protein, at 887,639 to 888,640
_c08600
PGA1_c08610: PGA1_c08610 - tRNA-Glu, at 888,902 to 888,976
_c08610
PGA1_c08620: PGA1_c08620 - tRNA-Glu, at 889,312 to 889,386
_c08620
PGA1_c08630: PGA1_c08630 - single-stranded-DNA-specific exonuclease RecJ, at 889,531 to 891,273
_c08630
PGA1_c08640: PGA1_c08640 - fructose-1,6-bisphosphatase class 2, at 891,415 to 892,398
_c08640
Position (kb) 889
890
891
892 Strain fitness (log2 ratio) -2
-1
0
1
2 at 888.536 kb on + strand, within PGA1_c08600 at 888.537 kb on + strand, within PGA1_c08600 at 888.592 kb on - strand at 888.635 kb on + strand at 888.636 kb on - strand at 888.677 kb on - strand at 888.695 kb on - strand at 888.723 kb on + strand at 888.723 kb on + strand at 888.723 kb on + strand at 888.723 kb on + strand at 888.731 kb on - strand at 888.769 kb on - strand at 888.769 kb on - strand at 888.843 kb on + strand at 888.843 kb on + strand at 888.851 kb on - strand at 888.857 kb on - strand at 888.885 kb on - strand at 888.893 kb on - strand at 888.893 kb on - strand at 889.183 kb on + strand at 889.183 kb on + strand at 889.490 kb on + strand at 889.491 kb on + strand at 889.506 kb on - strand at 889.527 kb on + strand at 891.332 kb on + strand at 891.332 kb on + strand at 891.332 kb on + strand at 891.332 kb on + strand at 891.340 kb on - strand at 891.347 kb on + strand at 891.350 kb on - strand at 891.355 kb on - strand at 891.406 kb on + strand at 891.414 kb on - strand at 891.415 kb on + strand at 891.435 kb on + strand at 891.440 kb on - strand at 891.744 kb on - strand, within PGA1_c08640 at 891.794 kb on - strand, within PGA1_c08640 at 891.920 kb on + strand, within PGA1_c08640 at 891.921 kb on - strand, within PGA1_c08640 at 891.922 kb on - strand, within PGA1_c08640 at 892.032 kb on + strand, within PGA1_c08640 at 892.032 kb on + strand, within PGA1_c08640 at 892.032 kb on + strand, within PGA1_c08640 at 892.032 kb on + strand, within PGA1_c08640 at 892.032 kb on + strand, within PGA1_c08640 at 892.032 kb on + strand, within PGA1_c08640 at 892.032 kb on + strand, within PGA1_c08640 at 892.032 kb on + strand, within PGA1_c08640 at 892.040 kb on - strand, within PGA1_c08640 at 892.040 kb on - strand, within PGA1_c08640 at 892.040 kb on - strand, within PGA1_c08640 at 892.040 kb on - strand, within PGA1_c08640 at 892.040 kb on - strand, within PGA1_c08640 at 892.040 kb on - strand, within PGA1_c08640 at 892.040 kb on - strand, within PGA1_c08640 at 892.047 kb on + strand, within PGA1_c08640 at 892.132 kb on + strand, within PGA1_c08640
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 888,536 + PGA1_c08600 0.90 +2.5 888,537 + PGA1_c08600 0.90 +2.4 888,592 - +2.4 888,635 + +0.6 888,636 - +0.9 888,677 - -0.5 888,695 - +0.5 888,723 + +0.5 888,723 + -0.6 888,723 + +1.1 888,723 + -0.4 888,731 - -0.0 888,769 - -0.4 888,769 - +0.5 888,843 + +0.4 888,843 + +0.5 888,851 - -0.6 888,857 - -1.2 888,885 - +0.6 888,893 - -0.2 888,893 - +0.5 889,183 + -0.2 889,183 + +0.9 889,490 + -0.3 889,491 + +0.3 889,506 - -0.0 889,527 + +0.9 891,332 + -1.5 891,332 + -0.2 891,332 + -0.6 891,332 + +0.6 891,340 - +0.1 891,347 + -1.3 891,350 - -0.3 891,355 - +0.3 891,406 + -1.3 891,414 - +0.1 891,415 + -1.0 891,435 + -0.7 891,440 - +0.6 891,744 - PGA1_c08640 0.33 -1.4 891,794 - PGA1_c08640 0.39 -1.9 891,920 + PGA1_c08640 0.51 -2.5 891,921 - PGA1_c08640 0.51 -0.3 891,922 - PGA1_c08640 0.52 -0.4 892,032 + PGA1_c08640 0.63 -1.2 892,032 + PGA1_c08640 0.63 -1.4 892,032 + PGA1_c08640 0.63 -0.3 892,032 + PGA1_c08640 0.63 -1.2 892,032 + PGA1_c08640 0.63 +0.7 892,032 + PGA1_c08640 0.63 -1.5 892,032 + PGA1_c08640 0.63 -1.2 892,032 + PGA1_c08640 0.63 -1.1 892,040 - PGA1_c08640 0.64 +0.0 892,040 - PGA1_c08640 0.64 -0.2 892,040 - PGA1_c08640 0.64 -1.1 892,040 - PGA1_c08640 0.64 -0.9 892,040 - PGA1_c08640 0.64 -0.9 892,040 - PGA1_c08640 0.64 +0.5 892,040 - PGA1_c08640 0.64 -1.0 892,047 + PGA1_c08640 0.64 -0.9 892,132 + PGA1_c08640 0.73 -1.2
Or see this region's nucleotide sequence