Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08600 and PGA1_c08610 are separated by 261 nucleotides PGA1_c08610 and PGA1_c08620 are separated by 335 nucleotides PGA1_c08620 and PGA1_c08630 are separated by 144 nucleotides
PGA1_c08600: PGA1_c08600 - diguanylate cyclase (GGDEF) domain-containing protein, at 887,639 to 888,640
_c08600
PGA1_c08610: PGA1_c08610 - tRNA-Glu, at 888,902 to 888,976
_c08610
PGA1_c08620: PGA1_c08620 - tRNA-Glu, at 889,312 to 889,386
_c08620
PGA1_c08630: PGA1_c08630 - single-stranded-DNA-specific exonuclease RecJ, at 889,531 to 891,273
_c08630
Position (kb) 889
890 Strain fitness (log2 ratio) -1
0
1
2
3 at 888.368 kb on + strand, within PGA1_c08600 at 888.521 kb on + strand, within PGA1_c08600 at 888.522 kb on + strand, within PGA1_c08600 at 888.536 kb on + strand, within PGA1_c08600 at 888.537 kb on + strand, within PGA1_c08600 at 888.592 kb on - strand at 888.635 kb on + strand at 888.636 kb on - strand at 888.677 kb on - strand at 888.695 kb on - strand at 888.723 kb on + strand at 888.723 kb on + strand at 888.723 kb on + strand at 888.723 kb on + strand at 888.731 kb on - strand at 888.769 kb on - strand at 888.769 kb on - strand at 888.843 kb on + strand at 888.843 kb on + strand at 888.851 kb on - strand at 888.857 kb on - strand at 888.885 kb on - strand at 888.893 kb on - strand at 888.893 kb on - strand at 889.183 kb on + strand at 889.183 kb on + strand at 889.490 kb on + strand at 889.491 kb on + strand at 889.506 kb on - strand at 889.527 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 888,368 + PGA1_c08600 0.73 +2.8 888,521 + PGA1_c08600 0.88 +1.5 888,522 + PGA1_c08600 0.88 +2.4 888,536 + PGA1_c08600 0.90 +2.5 888,537 + PGA1_c08600 0.90 +2.4 888,592 - +2.4 888,635 + +0.6 888,636 - +0.9 888,677 - -0.5 888,695 - +0.5 888,723 + +0.5 888,723 + -0.6 888,723 + +1.1 888,723 + -0.4 888,731 - -0.0 888,769 - -0.4 888,769 - +0.5 888,843 + +0.4 888,843 + +0.5 888,851 - -0.6 888,857 - -1.2 888,885 - +0.6 888,893 - -0.2 888,893 - +0.5 889,183 + -0.2 889,183 + +0.9 889,490 + -0.3 889,491 + +0.3 889,506 - -0.0 889,527 + +0.9
Or see this region's nucleotide sequence