Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06580 and PGA1_c06590 are separated by 131 nucleotides PGA1_c06590 and PGA1_c06600 overlap by 4 nucleotides PGA1_c06600 and PGA1_c06610 are separated by 1 nucleotides PGA1_c06610 and PGA1_c06620 are separated by 1 nucleotides
PGA1_c06580: PGA1_c06580 - ketol-acid reductoisomerase IlvC, at 676,463 to 677,485
_c06580
PGA1_c06590: PGA1_c06590 - putative transcriptional regulator, AsnC family, at 677,617 to 678,072
_c06590
PGA1_c06600: PGA1_c06600 - putative transcriptional regulator, AsnC family, at 678,069 to 678,527
_c06600
PGA1_c06610: PGA1_c06610 - hypothetical protein, at 678,529 to 679,221
_c06610
PGA1_c06620: PGA1_c06620 - putative FAD-dependent hydroxylase, at 679,223 to 680,419
_c06620
Position (kb) 678
679 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 677.696 kb on + strand, within PGA1_c06590 at 677.981 kb on - strand, within PGA1_c06590 at 677.989 kb on + strand, within PGA1_c06590 at 677.989 kb on + strand, within PGA1_c06590 at 677.997 kb on - strand, within PGA1_c06590 at 678.475 kb on - strand, within PGA1_c06600 at 678.526 kb on + strand at 678.526 kb on + strand at 678.526 kb on + strand at 678.546 kb on + strand at 678.615 kb on + strand, within PGA1_c06610 at 678.615 kb on + strand, within PGA1_c06610 at 678.616 kb on + strand, within PGA1_c06610 at 678.623 kb on - strand, within PGA1_c06610 at 678.623 kb on - strand, within PGA1_c06610 at 678.624 kb on - strand, within PGA1_c06610 at 678.624 kb on - strand, within PGA1_c06610 at 678.644 kb on + strand, within PGA1_c06610 at 678.682 kb on - strand, within PGA1_c06610 at 678.706 kb on - strand, within PGA1_c06610 at 678.780 kb on + strand, within PGA1_c06610 at 678.815 kb on + strand, within PGA1_c06610 at 678.819 kb on + strand, within PGA1_c06610 at 678.823 kb on - strand, within PGA1_c06610 at 678.826 kb on + strand, within PGA1_c06610 at 678.859 kb on - strand, within PGA1_c06610 at 678.861 kb on - strand, within PGA1_c06610 at 678.870 kb on + strand, within PGA1_c06610 at 678.947 kb on + strand, within PGA1_c06610 at 678.950 kb on - strand, within PGA1_c06610 at 679.019 kb on - strand, within PGA1_c06610 at 679.043 kb on - strand, within PGA1_c06610 at 679.046 kb on + strand, within PGA1_c06610 at 679.059 kb on - strand, within PGA1_c06610 at 679.116 kb on + strand, within PGA1_c06610 at 679.140 kb on + strand, within PGA1_c06610 at 679.145 kb on + strand, within PGA1_c06610 at 679.145 kb on + strand, within PGA1_c06610 at 679.153 kb on - strand at 679.153 kb on - strand at 679.153 kb on - strand at 679.167 kb on + strand at 679.172 kb on + strand at 679.185 kb on - strand at 679.250 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 677,696 + PGA1_c06590 0.17 -3.6 677,981 - PGA1_c06590 0.80 -2.6 677,989 + PGA1_c06590 0.82 -0.8 677,989 + PGA1_c06590 0.82 -2.3 677,997 - PGA1_c06590 0.83 -0.9 678,475 - PGA1_c06600 0.88 -1.9 678,526 + -0.3 678,526 + -0.9 678,526 + -0.5 678,546 + -0.9 678,615 + PGA1_c06610 0.12 +1.3 678,615 + PGA1_c06610 0.12 +1.3 678,616 + PGA1_c06610 0.13 -0.4 678,623 - PGA1_c06610 0.14 -1.1 678,623 - PGA1_c06610 0.14 +0.5 678,624 - PGA1_c06610 0.14 +0.4 678,624 - PGA1_c06610 0.14 -0.7 678,644 + PGA1_c06610 0.17 +0.2 678,682 - PGA1_c06610 0.22 +0.2 678,706 - PGA1_c06610 0.26 -0.1 678,780 + PGA1_c06610 0.36 +1.0 678,815 + PGA1_c06610 0.41 -1.0 678,819 + PGA1_c06610 0.42 -0.9 678,823 - PGA1_c06610 0.42 -0.3 678,826 + PGA1_c06610 0.43 +0.1 678,859 - PGA1_c06610 0.48 -0.3 678,861 - PGA1_c06610 0.48 +1.6 678,870 + PGA1_c06610 0.49 +0.7 678,947 + PGA1_c06610 0.60 +0.2 678,950 - PGA1_c06610 0.61 +0.3 679,019 - PGA1_c06610 0.71 -0.8 679,043 - PGA1_c06610 0.74 -0.0 679,046 + PGA1_c06610 0.75 +0.4 679,059 - PGA1_c06610 0.76 -0.6 679,116 + PGA1_c06610 0.85 -1.0 679,140 + PGA1_c06610 0.88 +0.9 679,145 + PGA1_c06610 0.89 +1.4 679,145 + PGA1_c06610 0.89 +0.5 679,153 - -0.2 679,153 - +0.9 679,153 - -0.0 679,167 + -0.3 679,172 + -0.2 679,185 - -0.1 679,250 - +0.4
Or see this region's nucleotide sequence