Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05880 and PGA1_c05890 are separated by 25 nucleotides PGA1_c05890 and PGA1_c05900 are separated by 114 nucleotides PGA1_c05900 and PGA1_c05910 are separated by 3 nucleotides PGA1_c05910 and PGA1_c05920 are separated by 13 nucleotides
PGA1_c05880: PGA1_c05880 - hypothetical protein, at 601,951 to 602,619
_c05880
PGA1_c05890: PGA1_c05890 - thioesterase domain-containing protein, at 602,645 to 603,031
_c05890
PGA1_c05900: PGA1_c05900 - protein TolQ, at 603,146 to 603,841
_c05900
PGA1_c05910: PGA1_c05910 - putative biopolymer transport protein ExbD, at 603,845 to 604,333
_c05910
PGA1_c05920: PGA1_c05920 - hypothetical protein, at 604,347 to 605,486
_c05920
Position (kb) 603
604 Strain fitness (log2 ratio) -1
0
1
2 at 602.158 kb on - strand, within PGA1_c05880 at 602.177 kb on + strand, within PGA1_c05880 at 602.195 kb on - strand, within PGA1_c05880 at 602.276 kb on - strand, within PGA1_c05880 at 602.338 kb on + strand, within PGA1_c05880 at 602.383 kb on + strand, within PGA1_c05880 at 602.383 kb on + strand, within PGA1_c05880 at 602.405 kb on - strand, within PGA1_c05880 at 602.500 kb on + strand, within PGA1_c05880 at 602.548 kb on - strand, within PGA1_c05880 at 602.613 kb on + strand at 602.627 kb on + strand at 602.634 kb on + strand at 602.634 kb on + strand at 602.634 kb on + strand at 602.634 kb on + strand at 602.634 kb on + strand at 602.648 kb on + strand at 602.682 kb on + strand at 602.737 kb on + strand, within PGA1_c05890 at 602.753 kb on - strand, within PGA1_c05890 at 602.779 kb on - strand, within PGA1_c05890 at 602.795 kb on + strand, within PGA1_c05890 at 602.799 kb on - strand, within PGA1_c05890 at 602.800 kb on + strand, within PGA1_c05890 at 602.800 kb on + strand, within PGA1_c05890 at 602.827 kb on + strand, within PGA1_c05890 at 602.843 kb on + strand, within PGA1_c05890 at 602.879 kb on - strand, within PGA1_c05890 at 602.887 kb on + strand, within PGA1_c05890 at 602.895 kb on - strand, within PGA1_c05890 at 602.895 kb on - strand, within PGA1_c05890 at 602.895 kb on - strand, within PGA1_c05890 at 602.900 kb on - strand, within PGA1_c05890 at 602.900 kb on - strand, within PGA1_c05890 at 602.900 kb on - strand, within PGA1_c05890 at 603.086 kb on - strand at 604.337 kb on + strand at 604.337 kb on + strand at 604.337 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 602,158 - PGA1_c05880 0.31 -0.4 602,177 + PGA1_c05880 0.34 -0.0 602,195 - PGA1_c05880 0.36 +0.0 602,276 - PGA1_c05880 0.49 -0.6 602,338 + PGA1_c05880 0.58 +0.8 602,383 + PGA1_c05880 0.65 +1.4 602,383 + PGA1_c05880 0.65 +0.1 602,405 - PGA1_c05880 0.68 +0.9 602,500 + PGA1_c05880 0.82 +0.4 602,548 - PGA1_c05880 0.89 +0.5 602,613 + +0.2 602,627 + -1.0 602,634 + -1.4 602,634 + +0.2 602,634 + -0.7 602,634 + +0.0 602,634 + -0.7 602,648 + +0.0 602,682 + +0.5 602,737 + PGA1_c05890 0.24 +0.7 602,753 - PGA1_c05890 0.28 +0.5 602,779 - PGA1_c05890 0.35 -1.0 602,795 + PGA1_c05890 0.39 -0.0 602,799 - PGA1_c05890 0.40 -0.2 602,800 + PGA1_c05890 0.40 +0.2 602,800 + PGA1_c05890 0.40 +0.8 602,827 + PGA1_c05890 0.47 -1.5 602,843 + PGA1_c05890 0.51 +0.6 602,879 - PGA1_c05890 0.60 +2.2 602,887 + PGA1_c05890 0.63 +0.0 602,895 - PGA1_c05890 0.65 -0.0 602,895 - PGA1_c05890 0.65 -0.4 602,895 - PGA1_c05890 0.65 +0.5 602,900 - PGA1_c05890 0.66 +0.5 602,900 - PGA1_c05890 0.66 +0.1 602,900 - PGA1_c05890 0.66 -0.5 603,086 - -1.0 604,337 + -1.3 604,337 + -1.7 604,337 + -1.0
Or see this region's nucleotide sequence