Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3119 and HP15_3120 are separated by 31 nucleotides HP15_3120 and HP15_3121 are separated by 156 nucleotides
HP15_3119: HP15_3119 - conserved hypothetical protein, at 3,269,823 to 3,271,871
_3119
HP15_3120: HP15_3120 - conserved hypothetical protein, at 3,271,903 to 3,273,135
_3120
HP15_3121: HP15_3121 - malate:quinone oxidoreductase, at 3,273,292 to 3,274,773
_3121
Position (kb)
3271
3272
3273
3274 Strain fitness (log2 ratio)
-2
-1
0
1 at 3270.918 kb on - strand, within HP15_3119 at 3270.931 kb on + strand, within HP15_3119 at 3270.931 kb on + strand, within HP15_3119 at 3270.931 kb on + strand, within HP15_3119 at 3270.931 kb on + strand, within HP15_3119 at 3270.931 kb on + strand, within HP15_3119 at 3270.939 kb on - strand, within HP15_3119 at 3270.939 kb on - strand, within HP15_3119 at 3270.939 kb on - strand, within HP15_3119 at 3270.939 kb on - strand, within HP15_3119 at 3270.974 kb on - strand, within HP15_3119 at 3270.998 kb on + strand, within HP15_3119 at 3271.009 kb on + strand, within HP15_3119 at 3271.009 kb on + strand, within HP15_3119 at 3271.009 kb on + strand, within HP15_3119 at 3271.017 kb on - strand, within HP15_3119 at 3271.149 kb on - strand, within HP15_3119 at 3271.166 kb on + strand, within HP15_3119 at 3271.188 kb on + strand, within HP15_3119 at 3271.188 kb on + strand, within HP15_3119 at 3271.188 kb on + strand, within HP15_3119 at 3271.244 kb on - strand, within HP15_3119 at 3271.279 kb on - strand, within HP15_3119 at 3271.279 kb on - strand, within HP15_3119 at 3271.346 kb on + strand, within HP15_3119 at 3271.346 kb on + strand, within HP15_3119 at 3271.346 kb on + strand, within HP15_3119 at 3271.354 kb on - strand, within HP15_3119 at 3271.361 kb on - strand, within HP15_3119 at 3271.372 kb on + strand, within HP15_3119 at 3271.372 kb on + strand, within HP15_3119 at 3271.380 kb on - strand, within HP15_3119 at 3271.380 kb on - strand, within HP15_3119 at 3271.380 kb on - strand, within HP15_3119 at 3271.382 kb on + strand, within HP15_3119 at 3271.455 kb on - strand, within HP15_3119 at 3271.463 kb on + strand, within HP15_3119 at 3271.472 kb on + strand, within HP15_3119 at 3271.497 kb on - strand, within HP15_3119 at 3271.600 kb on - strand, within HP15_3119 at 3271.640 kb on + strand, within HP15_3119 at 3271.773 kb on - strand at 3271.932 kb on - strand at 3271.952 kb on + strand at 3271.952 kb on + strand at 3271.960 kb on - strand at 3271.960 kb on - strand at 3271.960 kb on - strand at 3272.087 kb on + strand, within HP15_3120 at 3272.138 kb on + strand, within HP15_3120 at 3272.138 kb on + strand, within HP15_3120 at 3272.177 kb on + strand, within HP15_3120 at 3272.220 kb on - strand, within HP15_3120 at 3272.224 kb on + strand, within HP15_3120 at 3272.272 kb on + strand, within HP15_3120 at 3272.288 kb on + strand, within HP15_3120 at 3272.424 kb on + strand, within HP15_3120 at 3272.450 kb on + strand, within HP15_3120 at 3272.643 kb on - strand, within HP15_3120 at 3272.650 kb on - strand, within HP15_3120 at 3272.765 kb on + strand, within HP15_3120 at 3272.765 kb on + strand, within HP15_3120 at 3272.765 kb on + strand, within HP15_3120 at 3272.829 kb on + strand, within HP15_3120 at 3272.903 kb on - strand, within HP15_3120 at 3272.927 kb on - strand, within HP15_3120 at 3272.997 kb on - strand, within HP15_3120 at 3273.007 kb on - strand, within HP15_3120 at 3273.014 kb on + strand at 3273.096 kb on + strand at 3273.162 kb on + strand at 3273.169 kb on - strand at 3273.170 kb on - strand at 3273.261 kb on + strand at 3273.269 kb on - strand at 3273.269 kb on - strand at 3273.342 kb on + strand at 3273.386 kb on - strand at 3273.704 kb on - strand, within HP15_3121 at 3273.740 kb on + strand, within HP15_3121 at 3273.848 kb on + strand, within HP15_3121 at 3273.918 kb on + strand, within HP15_3121
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 3,270,918 - HP15_3119 0.53 +0.7 3,270,931 + HP15_3119 0.54 +0.1 3,270,931 + HP15_3119 0.54 -0.0 3,270,931 + HP15_3119 0.54 -0.2 3,270,931 + HP15_3119 0.54 -0.3 3,270,931 + HP15_3119 0.54 -0.1 3,270,939 - HP15_3119 0.54 -0.0 3,270,939 - HP15_3119 0.54 +0.7 3,270,939 - HP15_3119 0.54 +1.4 3,270,939 - HP15_3119 0.54 -0.2 3,270,974 - HP15_3119 0.56 -1.7 3,270,998 + HP15_3119 0.57 -0.6 3,271,009 + HP15_3119 0.58 +0.3 3,271,009 + HP15_3119 0.58 -1.6 3,271,009 + HP15_3119 0.58 -1.6 3,271,017 - HP15_3119 0.58 +0.4 3,271,149 - HP15_3119 0.65 +0.7 3,271,166 + HP15_3119 0.66 -0.9 3,271,188 + HP15_3119 0.67 -0.9 3,271,188 + HP15_3119 0.67 -0.9 3,271,188 + HP15_3119 0.67 -0.4 3,271,244 - HP15_3119 0.69 -0.6 3,271,279 - HP15_3119 0.71 +0.5 3,271,279 - HP15_3119 0.71 +0.4 3,271,346 + HP15_3119 0.74 -2.1 3,271,346 + HP15_3119 0.74 +0.5 3,271,346 + HP15_3119 0.74 +0.2 3,271,354 - HP15_3119 0.75 -0.4 3,271,361 - HP15_3119 0.75 +0.2 3,271,372 + HP15_3119 0.76 -0.2 3,271,372 + HP15_3119 0.76 +1.1 3,271,380 - HP15_3119 0.76 -0.5 3,271,380 - HP15_3119 0.76 +0.1 3,271,380 - HP15_3119 0.76 +0.4 3,271,382 + HP15_3119 0.76 +0.5 3,271,455 - HP15_3119 0.80 +0.4 3,271,463 + HP15_3119 0.80 -0.1 3,271,472 + HP15_3119 0.80 -0.0 3,271,497 - HP15_3119 0.82 -0.1 3,271,600 - HP15_3119 0.87 +0.3 3,271,640 + HP15_3119 0.89 +0.5 3,271,773 - +0.3 3,271,932 - -1.5 3,271,952 + -0.2 3,271,952 + -0.3 3,271,960 - +1.0 3,271,960 - +0.6 3,271,960 - -0.5 3,272,087 + HP15_3120 0.15 -0.6 3,272,138 + HP15_3120 0.19 +0.2 3,272,138 + HP15_3120 0.19 +0.3 3,272,177 + HP15_3120 0.22 +0.3 3,272,220 - HP15_3120 0.26 +0.3 3,272,224 + HP15_3120 0.26 -0.5 3,272,272 + HP15_3120 0.30 +0.0 3,272,288 + HP15_3120 0.31 -0.0 3,272,424 + HP15_3120 0.42 -0.8 3,272,450 + HP15_3120 0.44 +0.1 3,272,643 - HP15_3120 0.60 +0.5 3,272,650 - HP15_3120 0.61 -0.2 3,272,765 + HP15_3120 0.70 +0.6 3,272,765 + HP15_3120 0.70 +1.1 3,272,765 + HP15_3120 0.70 +0.3 3,272,829 + HP15_3120 0.75 +0.4 3,272,903 - HP15_3120 0.81 +0.1 3,272,927 - HP15_3120 0.83 +0.9 3,272,997 - HP15_3120 0.89 +0.7 3,273,007 - HP15_3120 0.90 +0.7 3,273,014 + +0.5 3,273,096 + +0.4 3,273,162 + -0.6 3,273,169 - +0.6 3,273,170 - +1.3 3,273,261 + -0.1 3,273,269 - -0.0 3,273,269 - +0.2 3,273,342 + -0.2 3,273,386 - -0.2 3,273,704 - HP15_3121 0.28 -1.2 3,273,740 + HP15_3121 0.30 -0.5 3,273,848 + HP15_3121 0.38 -0.4 3,273,918 + HP15_3121 0.42 +0.7
Or see this region's nucleotide sequence