Strain Fitness in Marinobacter adhaerens HP15 around HP15_3120

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3119 and HP15_3120 are separated by 31 nucleotidesHP15_3120 and HP15_3121 are separated by 156 nucleotides HP15_3119: HP15_3119 - conserved hypothetical protein, at 3,269,823 to 3,271,871 _3119 HP15_3120: HP15_3120 - conserved hypothetical protein, at 3,271,903 to 3,273,135 _3120 HP15_3121: HP15_3121 - malate:quinone oxidoreductase, at 3,273,292 to 3,274,773 _3121 Position (kb) 3271 3272 3273 3274Strain fitness (log2 ratio) -2 -1 0 1at 3270.918 kb on - strand, within HP15_3119at 3270.931 kb on + strand, within HP15_3119at 3270.931 kb on + strand, within HP15_3119at 3270.931 kb on + strand, within HP15_3119at 3270.931 kb on + strand, within HP15_3119at 3270.931 kb on + strand, within HP15_3119at 3270.939 kb on - strand, within HP15_3119at 3270.939 kb on - strand, within HP15_3119at 3270.939 kb on - strand, within HP15_3119at 3270.939 kb on - strand, within HP15_3119at 3270.974 kb on - strand, within HP15_3119at 3270.998 kb on + strand, within HP15_3119at 3271.009 kb on + strand, within HP15_3119at 3271.009 kb on + strand, within HP15_3119at 3271.009 kb on + strand, within HP15_3119at 3271.017 kb on - strand, within HP15_3119at 3271.149 kb on - strand, within HP15_3119at 3271.166 kb on + strand, within HP15_3119at 3271.188 kb on + strand, within HP15_3119at 3271.188 kb on + strand, within HP15_3119at 3271.188 kb on + strand, within HP15_3119at 3271.244 kb on - strand, within HP15_3119at 3271.279 kb on - strand, within HP15_3119at 3271.279 kb on - strand, within HP15_3119at 3271.346 kb on + strand, within HP15_3119at 3271.346 kb on + strand, within HP15_3119at 3271.346 kb on + strand, within HP15_3119at 3271.354 kb on - strand, within HP15_3119at 3271.361 kb on - strand, within HP15_3119at 3271.372 kb on + strand, within HP15_3119at 3271.372 kb on + strand, within HP15_3119at 3271.380 kb on - strand, within HP15_3119at 3271.380 kb on - strand, within HP15_3119at 3271.380 kb on - strand, within HP15_3119at 3271.382 kb on + strand, within HP15_3119at 3271.455 kb on - strand, within HP15_3119at 3271.463 kb on + strand, within HP15_3119at 3271.472 kb on + strand, within HP15_3119at 3271.497 kb on - strand, within HP15_3119at 3271.600 kb on - strand, within HP15_3119at 3271.640 kb on + strand, within HP15_3119at 3271.773 kb on - strandat 3271.932 kb on - strandat 3271.952 kb on + strandat 3271.952 kb on + strandat 3271.960 kb on - strandat 3271.960 kb on - strandat 3271.960 kb on - strandat 3272.087 kb on + strand, within HP15_3120at 3272.138 kb on + strand, within HP15_3120at 3272.138 kb on + strand, within HP15_3120at 3272.177 kb on + strand, within HP15_3120at 3272.220 kb on - strand, within HP15_3120at 3272.224 kb on + strand, within HP15_3120at 3272.272 kb on + strand, within HP15_3120at 3272.288 kb on + strand, within HP15_3120at 3272.424 kb on + strand, within HP15_3120at 3272.450 kb on + strand, within HP15_3120at 3272.643 kb on - strand, within HP15_3120at 3272.650 kb on - strand, within HP15_3120at 3272.765 kb on + strand, within HP15_3120at 3272.765 kb on + strand, within HP15_3120at 3272.765 kb on + strand, within HP15_3120at 3272.829 kb on + strand, within HP15_3120at 3272.903 kb on - strand, within HP15_3120at 3272.927 kb on - strand, within HP15_3120at 3272.997 kb on - strand, within HP15_3120at 3273.007 kb on - strand, within HP15_3120at 3273.014 kb on + strandat 3273.096 kb on + strandat 3273.162 kb on + strandat 3273.169 kb on - strandat 3273.170 kb on - strandat 3273.261 kb on + strandat 3273.269 kb on - strandat 3273.269 kb on - strandat 3273.342 kb on + strandat 3273.386 kb on - strandat 3273.704 kb on - strand, within HP15_3121at 3273.740 kb on + strand, within HP15_3121at 3273.848 kb on + strand, within HP15_3121at 3273.918 kb on + strand, within HP15_3121

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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3,270,918 - HP15_3119 0.53 +0.7
3,270,931 + HP15_3119 0.54 +0.1
3,270,931 + HP15_3119 0.54 -0.0
3,270,931 + HP15_3119 0.54 -0.2
3,270,931 + HP15_3119 0.54 -0.3
3,270,931 + HP15_3119 0.54 -0.1
3,270,939 - HP15_3119 0.54 -0.0
3,270,939 - HP15_3119 0.54 +0.7
3,270,939 - HP15_3119 0.54 +1.4
3,270,939 - HP15_3119 0.54 -0.2
3,270,974 - HP15_3119 0.56 -1.7
3,270,998 + HP15_3119 0.57 -0.6
3,271,009 + HP15_3119 0.58 +0.3
3,271,009 + HP15_3119 0.58 -1.6
3,271,009 + HP15_3119 0.58 -1.6
3,271,017 - HP15_3119 0.58 +0.4
3,271,149 - HP15_3119 0.65 +0.7
3,271,166 + HP15_3119 0.66 -0.9
3,271,188 + HP15_3119 0.67 -0.9
3,271,188 + HP15_3119 0.67 -0.9
3,271,188 + HP15_3119 0.67 -0.4
3,271,244 - HP15_3119 0.69 -0.6
3,271,279 - HP15_3119 0.71 +0.5
3,271,279 - HP15_3119 0.71 +0.4
3,271,346 + HP15_3119 0.74 -2.1
3,271,346 + HP15_3119 0.74 +0.5
3,271,346 + HP15_3119 0.74 +0.2
3,271,354 - HP15_3119 0.75 -0.4
3,271,361 - HP15_3119 0.75 +0.2
3,271,372 + HP15_3119 0.76 -0.2
3,271,372 + HP15_3119 0.76 +1.1
3,271,380 - HP15_3119 0.76 -0.5
3,271,380 - HP15_3119 0.76 +0.1
3,271,380 - HP15_3119 0.76 +0.4
3,271,382 + HP15_3119 0.76 +0.5
3,271,455 - HP15_3119 0.80 +0.4
3,271,463 + HP15_3119 0.80 -0.1
3,271,472 + HP15_3119 0.80 -0.0
3,271,497 - HP15_3119 0.82 -0.1
3,271,600 - HP15_3119 0.87 +0.3
3,271,640 + HP15_3119 0.89 +0.5
3,271,773 - +0.3
3,271,932 - -1.5
3,271,952 + -0.2
3,271,952 + -0.3
3,271,960 - +1.0
3,271,960 - +0.6
3,271,960 - -0.5
3,272,087 + HP15_3120 0.15 -0.6
3,272,138 + HP15_3120 0.19 +0.2
3,272,138 + HP15_3120 0.19 +0.3
3,272,177 + HP15_3120 0.22 +0.3
3,272,220 - HP15_3120 0.26 +0.3
3,272,224 + HP15_3120 0.26 -0.5
3,272,272 + HP15_3120 0.30 +0.0
3,272,288 + HP15_3120 0.31 -0.0
3,272,424 + HP15_3120 0.42 -0.8
3,272,450 + HP15_3120 0.44 +0.1
3,272,643 - HP15_3120 0.60 +0.5
3,272,650 - HP15_3120 0.61 -0.2
3,272,765 + HP15_3120 0.70 +0.6
3,272,765 + HP15_3120 0.70 +1.1
3,272,765 + HP15_3120 0.70 +0.3
3,272,829 + HP15_3120 0.75 +0.4
3,272,903 - HP15_3120 0.81 +0.1
3,272,927 - HP15_3120 0.83 +0.9
3,272,997 - HP15_3120 0.89 +0.7
3,273,007 - HP15_3120 0.90 +0.7
3,273,014 + +0.5
3,273,096 + +0.4
3,273,162 + -0.6
3,273,169 - +0.6
3,273,170 - +1.3
3,273,261 + -0.1
3,273,269 - -0.0
3,273,269 - +0.2
3,273,342 + -0.2
3,273,386 - -0.2
3,273,704 - HP15_3121 0.28 -1.2
3,273,740 + HP15_3121 0.30 -0.5
3,273,848 + HP15_3121 0.38 -0.4
3,273,918 + HP15_3121 0.42 +0.7

Or see this region's nucleotide sequence