Strain Fitness in Marinobacter adhaerens HP15 around HP15_2810

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2809 and HP15_2810 are separated by 113 nucleotidesHP15_2810 and HP15_2811 are separated by 225 nucleotides HP15_2809: HP15_2809 - porin precursor, at 2,958,309 to 2,959,616 _2809 HP15_2810: HP15_2810 - conserved hypothetical protein, at 2,959,730 to 2,961,037 _2810 HP15_2811: HP15_2811 - MscS mechanosensitive ion channel, at 2,961,263 to 2,962,429 _2811 Position (kb) 2959 2960 2961 2962Strain fitness (log2 ratio) -1 0 1at 2958.737 kb on + strand, within HP15_2809at 2958.739 kb on + strand, within HP15_2809at 2958.745 kb on + strand, within HP15_2809at 2958.747 kb on - strand, within HP15_2809at 2958.817 kb on + strand, within HP15_2809at 2958.817 kb on + strand, within HP15_2809at 2958.817 kb on + strand, within HP15_2809at 2958.825 kb on - strand, within HP15_2809at 2958.859 kb on - strand, within HP15_2809at 2958.961 kb on + strand, within HP15_2809at 2959.002 kb on + strand, within HP15_2809at 2959.166 kb on - strand, within HP15_2809at 2959.166 kb on - strand, within HP15_2809at 2959.189 kb on + strand, within HP15_2809at 2959.221 kb on - strand, within HP15_2809at 2959.243 kb on + strand, within HP15_2809at 2959.247 kb on + strand, within HP15_2809at 2959.263 kb on + strand, within HP15_2809at 2959.265 kb on + strand, within HP15_2809at 2959.300 kb on + strand, within HP15_2809at 2959.324 kb on + strand, within HP15_2809at 2959.324 kb on + strand, within HP15_2809at 2959.375 kb on + strand, within HP15_2809at 2959.401 kb on + strand, within HP15_2809at 2959.484 kb on - strand, within HP15_2809at 2959.553 kb on - strandat 2959.620 kb on + strandat 2959.628 kb on - strandat 2959.631 kb on - strandat 2959.690 kb on + strandat 2959.711 kb on - strandat 2959.721 kb on + strandat 2959.760 kb on - strandat 2959.819 kb on - strandat 2959.953 kb on - strand, within HP15_2810at 2960.105 kb on - strand, within HP15_2810at 2960.243 kb on + strand, within HP15_2810at 2960.285 kb on - strand, within HP15_2810at 2960.285 kb on - strand, within HP15_2810at 2960.287 kb on + strand, within HP15_2810at 2960.287 kb on + strand, within HP15_2810at 2960.337 kb on - strand, within HP15_2810at 2960.388 kb on + strand, within HP15_2810at 2960.592 kb on + strand, within HP15_2810at 2960.618 kb on - strand, within HP15_2810at 2960.682 kb on - strand, within HP15_2810at 2960.841 kb on + strand, within HP15_2810at 2960.841 kb on + strand, within HP15_2810at 2960.849 kb on - strand, within HP15_2810at 2960.863 kb on - strand, within HP15_2810at 2960.889 kb on + strand, within HP15_2810at 2960.920 kb on + strandat 2961.163 kb on - strandat 2961.418 kb on + strand, within HP15_2811at 2961.692 kb on - strand, within HP15_2811at 2961.733 kb on - strand, within HP15_2811at 2961.897 kb on - strand, within HP15_2811at 2961.982 kb on + strand, within HP15_2811

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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2,958,737 + HP15_2809 0.33 -0.2
2,958,739 + HP15_2809 0.33 -0.6
2,958,745 + HP15_2809 0.33 +0.5
2,958,747 - HP15_2809 0.33 -0.6
2,958,817 + HP15_2809 0.39 +0.1
2,958,817 + HP15_2809 0.39 +0.6
2,958,817 + HP15_2809 0.39 +0.6
2,958,825 - HP15_2809 0.39 +0.5
2,958,859 - HP15_2809 0.42 -0.3
2,958,961 + HP15_2809 0.50 +0.9
2,959,002 + HP15_2809 0.53 -0.2
2,959,166 - HP15_2809 0.66 -0.4
2,959,166 - HP15_2809 0.66 +0.3
2,959,189 + HP15_2809 0.67 -0.3
2,959,221 - HP15_2809 0.70 +0.1
2,959,243 + HP15_2809 0.71 -0.4
2,959,247 + HP15_2809 0.72 -0.8
2,959,263 + HP15_2809 0.73 -0.4
2,959,265 + HP15_2809 0.73 -0.3
2,959,300 + HP15_2809 0.76 +1.2
2,959,324 + HP15_2809 0.78 -0.6
2,959,324 + HP15_2809 0.78 +0.6
2,959,375 + HP15_2809 0.81 +0.2
2,959,401 + HP15_2809 0.83 +0.4
2,959,484 - HP15_2809 0.90 -1.0
2,959,553 - -0.3
2,959,620 + -0.1
2,959,628 - +0.4
2,959,631 - -0.6
2,959,690 + +0.0
2,959,711 - -0.6
2,959,721 + +0.0
2,959,760 - +0.6
2,959,819 - +1.2
2,959,953 - HP15_2810 0.17 -0.2
2,960,105 - HP15_2810 0.29 +0.1
2,960,243 + HP15_2810 0.39 -0.5
2,960,285 - HP15_2810 0.42 +0.5
2,960,285 - HP15_2810 0.42 -0.9
2,960,287 + HP15_2810 0.43 -0.3
2,960,287 + HP15_2810 0.43 +0.0
2,960,337 - HP15_2810 0.46 +0.1
2,960,388 + HP15_2810 0.50 -0.7
2,960,592 + HP15_2810 0.66 +0.1
2,960,618 - HP15_2810 0.68 -1.0
2,960,682 - HP15_2810 0.73 -0.4
2,960,841 + HP15_2810 0.85 -0.1
2,960,841 + HP15_2810 0.85 +0.6
2,960,849 - HP15_2810 0.86 +0.2
2,960,863 - HP15_2810 0.87 -0.4
2,960,889 + HP15_2810 0.89 -0.5
2,960,920 + -0.8
2,961,163 - +0.1
2,961,418 + HP15_2811 0.13 -1.5
2,961,692 - HP15_2811 0.37 +0.4
2,961,733 - HP15_2811 0.40 +0.3
2,961,897 - HP15_2811 0.54 -0.9
2,961,982 + HP15_2811 0.62 -0.1

Or see this region's nucleotide sequence