Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2809 and HP15_2810 are separated by 113 nucleotides HP15_2810 and HP15_2811 are separated by 225 nucleotides
HP15_2809: HP15_2809 - porin precursor, at 2,958,309 to 2,959,616
_2809
HP15_2810: HP15_2810 - conserved hypothetical protein, at 2,959,730 to 2,961,037
_2810
HP15_2811: HP15_2811 - MscS mechanosensitive ion channel, at 2,961,263 to 2,962,429
_2811
Position (kb)
2959
2960
2961
2962 Strain fitness (log2 ratio)
-1
0
1 at 2958.737 kb on + strand, within HP15_2809 at 2958.739 kb on + strand, within HP15_2809 at 2958.745 kb on + strand, within HP15_2809 at 2958.747 kb on - strand, within HP15_2809 at 2958.817 kb on + strand, within HP15_2809 at 2958.817 kb on + strand, within HP15_2809 at 2958.817 kb on + strand, within HP15_2809 at 2958.825 kb on - strand, within HP15_2809 at 2958.859 kb on - strand, within HP15_2809 at 2958.961 kb on + strand, within HP15_2809 at 2959.002 kb on + strand, within HP15_2809 at 2959.166 kb on - strand, within HP15_2809 at 2959.166 kb on - strand, within HP15_2809 at 2959.189 kb on + strand, within HP15_2809 at 2959.221 kb on - strand, within HP15_2809 at 2959.243 kb on + strand, within HP15_2809 at 2959.247 kb on + strand, within HP15_2809 at 2959.263 kb on + strand, within HP15_2809 at 2959.265 kb on + strand, within HP15_2809 at 2959.300 kb on + strand, within HP15_2809 at 2959.324 kb on + strand, within HP15_2809 at 2959.324 kb on + strand, within HP15_2809 at 2959.375 kb on + strand, within HP15_2809 at 2959.401 kb on + strand, within HP15_2809 at 2959.484 kb on - strand, within HP15_2809 at 2959.553 kb on - strand at 2959.620 kb on + strand at 2959.628 kb on - strand at 2959.631 kb on - strand at 2959.690 kb on + strand at 2959.711 kb on - strand at 2959.721 kb on + strand at 2959.760 kb on - strand at 2959.819 kb on - strand at 2959.953 kb on - strand, within HP15_2810 at 2960.105 kb on - strand, within HP15_2810 at 2960.243 kb on + strand, within HP15_2810 at 2960.285 kb on - strand, within HP15_2810 at 2960.285 kb on - strand, within HP15_2810 at 2960.287 kb on + strand, within HP15_2810 at 2960.287 kb on + strand, within HP15_2810 at 2960.337 kb on - strand, within HP15_2810 at 2960.388 kb on + strand, within HP15_2810 at 2960.592 kb on + strand, within HP15_2810 at 2960.618 kb on - strand, within HP15_2810 at 2960.682 kb on - strand, within HP15_2810 at 2960.841 kb on + strand, within HP15_2810 at 2960.841 kb on + strand, within HP15_2810 at 2960.849 kb on - strand, within HP15_2810 at 2960.863 kb on - strand, within HP15_2810 at 2960.889 kb on + strand, within HP15_2810 at 2960.920 kb on + strand at 2961.163 kb on - strand at 2961.418 kb on + strand, within HP15_2811 at 2961.692 kb on - strand, within HP15_2811 at 2961.733 kb on - strand, within HP15_2811 at 2961.897 kb on - strand, within HP15_2811 at 2961.982 kb on + strand, within HP15_2811
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 2,958,737 + HP15_2809 0.33 -0.2 2,958,739 + HP15_2809 0.33 -0.6 2,958,745 + HP15_2809 0.33 +0.5 2,958,747 - HP15_2809 0.33 -0.6 2,958,817 + HP15_2809 0.39 +0.1 2,958,817 + HP15_2809 0.39 +0.6 2,958,817 + HP15_2809 0.39 +0.6 2,958,825 - HP15_2809 0.39 +0.5 2,958,859 - HP15_2809 0.42 -0.3 2,958,961 + HP15_2809 0.50 +0.9 2,959,002 + HP15_2809 0.53 -0.2 2,959,166 - HP15_2809 0.66 -0.4 2,959,166 - HP15_2809 0.66 +0.3 2,959,189 + HP15_2809 0.67 -0.3 2,959,221 - HP15_2809 0.70 +0.1 2,959,243 + HP15_2809 0.71 -0.4 2,959,247 + HP15_2809 0.72 -0.8 2,959,263 + HP15_2809 0.73 -0.4 2,959,265 + HP15_2809 0.73 -0.3 2,959,300 + HP15_2809 0.76 +1.2 2,959,324 + HP15_2809 0.78 -0.6 2,959,324 + HP15_2809 0.78 +0.6 2,959,375 + HP15_2809 0.81 +0.2 2,959,401 + HP15_2809 0.83 +0.4 2,959,484 - HP15_2809 0.90 -1.0 2,959,553 - -0.3 2,959,620 + -0.1 2,959,628 - +0.4 2,959,631 - -0.6 2,959,690 + +0.0 2,959,711 - -0.6 2,959,721 + +0.0 2,959,760 - +0.6 2,959,819 - +1.2 2,959,953 - HP15_2810 0.17 -0.2 2,960,105 - HP15_2810 0.29 +0.1 2,960,243 + HP15_2810 0.39 -0.5 2,960,285 - HP15_2810 0.42 +0.5 2,960,285 - HP15_2810 0.42 -0.9 2,960,287 + HP15_2810 0.43 -0.3 2,960,287 + HP15_2810 0.43 +0.0 2,960,337 - HP15_2810 0.46 +0.1 2,960,388 + HP15_2810 0.50 -0.7 2,960,592 + HP15_2810 0.66 +0.1 2,960,618 - HP15_2810 0.68 -1.0 2,960,682 - HP15_2810 0.73 -0.4 2,960,841 + HP15_2810 0.85 -0.1 2,960,841 + HP15_2810 0.85 +0.6 2,960,849 - HP15_2810 0.86 +0.2 2,960,863 - HP15_2810 0.87 -0.4 2,960,889 + HP15_2810 0.89 -0.5 2,960,920 + -0.8 2,961,163 - +0.1 2,961,418 + HP15_2811 0.13 -1.5 2,961,692 - HP15_2811 0.37 +0.4 2,961,733 - HP15_2811 0.40 +0.3 2,961,897 - HP15_2811 0.54 -0.9 2,961,982 + HP15_2811 0.62 -0.1
Or see this region's nucleotide sequence