Strain Fitness in Shewanella amazonensis SB2B around Sama_3655

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
4,302,884	-		Sama_3653	0.77	-3.4
4,302,891	-		Sama_3653	0.78	-1.2
4,302,904	+		Sama_3653	0.80	-2.6
4,302,904	+		Sama_3653	0.80	-0.8
4,302,904	+		Sama_3653	0.80	-0.9
4,302,905	-		Sama_3653	0.80	+0.1
4,302,905	-		Sama_3653	0.80	-2.3
4,302,905	-		Sama_3653	0.80	-1.5
4,302,912	+		Sama_3653	0.81	-1.3
4,302,913	-		Sama_3653	0.81	-2.6
4,302,913	-		Sama_3653	0.81	-1.6
4,302,913	-		Sama_3653	0.81	-3.4
4,302,913	-		Sama_3653	0.81	+0.5
4,302,936	-		Sama_3653	0.84	-3.1
4,303,011	-				-2.0
4,303,011	-				+0.1
4,303,024	-				+0.8
4,303,081	+				-1.6
4,303,081	+				-0.7
4,303,081	+				-0.2
4,303,081	+				-1.7
4,303,081	+				-0.5
4,303,082	-				-1.0
4,303,104	+				-0.2
4,303,104	+				+0.3
4,303,104	+				-1.8
4,303,104	+				-2.2
4,303,104	+				-3.4
4,303,104	+				-0.5
4,303,104	+				-2.7
4,303,105	-				+0.7
4,303,105	-				-1.8
4,303,232	+	gidB	Sama_3654	0.12	-1.5
4,303,232	+	gidB	Sama_3654	0.12	-1.6
4,303,232	+	gidB	Sama_3654	0.12	-1.8
4,303,233	-	gidB	Sama_3654	0.13	-0.9
4,303,289	-	gidB	Sama_3654	0.22	+0.1
4,303,289	-	gidB	Sama_3654	0.22	-2.7
4,303,289	-	gidB	Sama_3654	0.22	-1.3
4,303,311	+	gidB	Sama_3654	0.25	-2.0
4,303,312	-	gidB	Sama_3654	0.25	-2.4
4,303,469	+	gidB	Sama_3654	0.51	-2.3
4,303,469	+	gidB	Sama_3654	0.51	-2.2
4,303,469	+	gidB	Sama_3654	0.51	-1.3
4,303,470	-	gidB	Sama_3654	0.51	-0.2
4,303,484	+	gidB	Sama_3654	0.53	-1.9
4,303,485	-	gidB	Sama_3654	0.53	-2.3
4,303,521	-	gidB	Sama_3654	0.59	-2.2
4,303,658	+	gidB	Sama_3654	0.81	-1.8
4,303,658	+	gidB	Sama_3654	0.81	-0.4
4,303,659	-	gidB	Sama_3654	0.81	-0.7
4,303,660	+	gidB	Sama_3654	0.81	-2.2
4,303,660	+	gidB	Sama_3654	0.81	-1.7
4,303,660	+	gidB	Sama_3654	0.81	+0.5
4,303,660	+	gidB	Sama_3654	0.81	-0.7
4,303,661	-	gidB	Sama_3654	0.81	-1.1
4,303,661	-	gidB	Sama_3654	0.81	+0.1
4,303,661	-	gidB	Sama_3654	0.81	-1.7
4,303,661	-	gidB	Sama_3654	0.81	-2.3
4,303,701	+	gidB	Sama_3654	0.88	-0.2
4,303,701	+	gidB	Sama_3654	0.88	+2.1
4,303,701	+	gidB	Sama_3654	0.88	-1.9
4,303,701	+	gidB	Sama_3654	0.88	-0.9
4,303,701	+	gidB	Sama_3654	0.88	-1.6
4,303,701	+	gidB	Sama_3654	0.88	+0.1
4,303,701	+	gidB	Sama_3654	0.88	-1.8
4,303,702	-	gidB	Sama_3654	0.88	-2.2
4,303,702	-	gidB	Sama_3654	0.88	+0.2
4,303,702	-	gidB	Sama_3654	0.88	-1.5
4,303,702	-	gidB	Sama_3654	0.88	-0.9
4,303,702	-	gidB	Sama_3654	0.88	-1.2
4,303,702	-	gidB	Sama_3654	0.88	+1.1
4,303,702	-	gidB	Sama_3654	0.88	-2.6
4,303,811	+				-1.7
4,303,811	+				-0.2
4,303,812	-				+0.3
4,303,812	-				+1.2
4,303,812	-				+0.8
4,303,814	+				+0.1
4,303,814	+				-0.1
4,303,814	+				-2.7
4,303,814	+				-0.3
4,303,814	+				-1.5
4,303,815	-				-1.2
4,303,815	-				-2.7
4,303,815	-				-1.8
4,303,815	-				-1.1
4,303,815	-				-0.6
4,303,815	-				-0.5
4,303,815	-				-1.3
4,303,878	+				-0.2
4,303,879	-				-3.2
4,304,125	-		Sama_3655	0.13	-0.2
4,305,734	+				+1.5
4,305,778	-				-1.4
4,305,778	-				+0.3
4,305,819	-				-2.1
4,305,819	-				+1.1
4,305,819	-				-0.1
4,305,819	-				-2.4
4,305,819	-				-0.1
4,305,819	-				+1.1
4,305,858	+				+0.5
4,305,858	+				+0.9
4,305,858	+				+1.0
4,305,858	+				+0.0
4,305,858	+				+1.9
4,305,859	-				+1.0
4,305,859	-				-1.8
4,305,859	-				+0.3
4,305,859	-				+1.8
4,305,859	-				+0.8
4,305,859	-				+1.3
4,305,859	-				-3.3
4,305,859	-				+2.1
4,305,859	-				-2.4
4,305,881	+				-2.2
4,305,881	+				-0.5
4,305,882	-				-0.5
4,305,882	-				+1.3
4,305,884	-				+0.4
4,305,884	-				+2.0
4,305,884	-				-3.5
4,305,884	-				+2.1
4,305,884	-				-1.1
4,305,884	-				+1.5
4,305,891	-				-0.5
4,305,891	-				-0.9