Strain Fitness in Shewanella amazonensis SB2B around Sama_3608

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
4,245,155	+				-0.3
4,245,156	-				-1.0
4,245,156	-				-0.8
4,245,161	+				+1.0
4,245,162	-				-1.8
4,245,200	+				-1.9
4,245,220	+				+1.6
4,245,233	+		Sama_3607	0.10	+0.5
4,245,233	+		Sama_3607	0.10	+1.7
4,245,233	+		Sama_3607	0.10	-0.9
4,245,233	+		Sama_3607	0.10	+0.4
4,245,233	+		Sama_3607	0.10	-2.3
4,245,233	+		Sama_3607	0.10	-0.3
4,245,233	+		Sama_3607	0.10	-1.7
4,245,233	+		Sama_3607	0.10	-2.7
4,245,233	+		Sama_3607	0.10	+1.8
4,245,233	+		Sama_3607	0.10	-2.2
4,245,233	+		Sama_3607	0.10	-1.1
4,245,233	+		Sama_3607	0.10	+0.3
4,245,233	+		Sama_3607	0.10	+0.2
4,245,233	+		Sama_3607	0.10	+0.4
4,245,233	+		Sama_3607	0.10	-1.2
4,245,234	-		Sama_3607	0.10	-1.7
4,245,234	-		Sama_3607	0.10	-1.3
4,245,234	-		Sama_3607	0.10	-2.6
4,245,234	-		Sama_3607	0.10	+1.0
4,245,234	-		Sama_3607	0.10	-1.8
4,245,234	-		Sama_3607	0.10	+1.5
4,245,234	-		Sama_3607	0.10	+1.0
4,245,234	-		Sama_3607	0.10	+0.3
4,245,234	-		Sama_3607	0.10	-1.3
4,245,234	-		Sama_3607	0.10	-2.3
4,245,234	-		Sama_3607	0.10	+0.7
4,245,234	-		Sama_3607	0.10	+1.1
4,245,234	-		Sama_3607	0.10	+1.2
4,245,234	-		Sama_3607	0.10	-0.1
4,245,234	-		Sama_3607	0.10	-0.2
4,245,234	-		Sama_3607	0.10	-1.7
4,245,234	-		Sama_3607	0.10	-2.1
4,245,234	-		Sama_3607	0.10	-0.9
4,245,282	+		Sama_3607	0.15	+0.9
4,245,283	-		Sama_3607	0.15	+0.8
4,245,283	-		Sama_3607	0.15	+2.3
4,245,283	-		Sama_3607	0.15	-2.5
4,245,299	+		Sama_3607	0.17	-2.3
4,245,299	+		Sama_3607	0.17	+0.8
4,245,299	+		Sama_3607	0.17	-1.0
4,245,299	+		Sama_3607	0.17	-1.4
4,245,299	+		Sama_3607	0.17	-0.8
4,245,299	+		Sama_3607	0.17	+0.3
4,245,299	+		Sama_3607	0.17	-0.2
4,245,299	+		Sama_3607	0.17	-1.2
4,245,299	+		Sama_3607	0.17	-0.1
4,245,299	+		Sama_3607	0.17	-0.7
4,245,299	+		Sama_3607	0.17	-1.2
4,245,299	+		Sama_3607	0.17	+0.2
4,245,300	-		Sama_3607	0.17	-1.5
4,245,300	-		Sama_3607	0.17	+1.1
4,245,300	-		Sama_3607	0.17	+0.4
4,245,341	+		Sama_3607	0.21	+1.0
4,245,386	+		Sama_3607	0.26	+0.5
4,245,387	-		Sama_3607	0.26	-0.3
4,245,387	-		Sama_3607	0.26	+0.6
4,245,500	+		Sama_3607	0.38	+0.7
4,245,500	+		Sama_3607	0.38	-1.1
4,245,501	-		Sama_3607	0.38	-0.5
4,245,501	-		Sama_3607	0.38	+0.3
4,245,502	+		Sama_3607	0.38	+1.9
4,245,502	+		Sama_3607	0.38	+0.3
4,245,502	+		Sama_3607	0.38	-0.5
4,245,502	+		Sama_3607	0.38	-2.6
4,245,503	-		Sama_3607	0.38	+1.8
4,245,503	-		Sama_3607	0.38	+1.9
4,245,503	-		Sama_3607	0.38	+1.6
4,245,503	-		Sama_3607	0.38	-1.5
4,245,503	-		Sama_3607	0.38	+0.5
4,245,519	-		Sama_3607	0.40	-0.8
4,245,519	-		Sama_3607	0.40	-0.5
4,245,519	-		Sama_3607	0.40	+1.2
4,245,519	-		Sama_3607	0.40	-0.7
4,245,519	-		Sama_3607	0.40	-1.1
4,245,519	-		Sama_3607	0.40	+1.3
4,245,519	-		Sama_3607	0.40	-1.8
4,245,535	+		Sama_3607	0.41	+1.5
4,245,536	-		Sama_3607	0.41	-3.5
4,245,536	-		Sama_3607	0.41	-0.6
4,245,593	+		Sama_3607	0.47	+1.3
4,245,593	+		Sama_3607	0.47	-3.1
4,245,593	+		Sama_3607	0.47	-1.9
4,245,593	+		Sama_3607	0.47	-1.8
4,245,593	+		Sama_3607	0.47	+1.1
4,245,593	+		Sama_3607	0.47	-0.7
4,245,594	-		Sama_3607	0.47	-0.1
4,245,594	-		Sama_3607	0.47	-0.4
4,245,634	+		Sama_3607	0.51	+0.3
4,245,634	+		Sama_3607	0.51	+0.5
4,245,634	+		Sama_3607	0.51	+0.3
4,245,634	+		Sama_3607	0.51	-1.7
4,245,634	+		Sama_3607	0.51	-0.5
4,245,634	+		Sama_3607	0.51	+0.7
4,245,634	+		Sama_3607	0.51	+0.0
4,245,634	+		Sama_3607	0.51	+0.2
4,245,635	-		Sama_3607	0.51	+0.6
4,245,635	-		Sama_3607	0.51	-0.7
4,245,700	-		Sama_3607	0.58	+0.9
4,245,700	-		Sama_3607	0.58	-0.1
4,245,756	+		Sama_3607	0.64	+2.2
4,245,756	+		Sama_3607	0.64	+0.0
4,245,756	+		Sama_3607	0.64	+1.9
4,245,756	+		Sama_3607	0.64	-1.2
4,245,756	+		Sama_3607	0.64	-2.2
4,245,756	+		Sama_3607	0.64	-1.3
4,245,756	+		Sama_3607	0.64	-0.2
4,245,756	+		Sama_3607	0.64	-0.4
4,245,756	+		Sama_3607	0.64	-0.6
4,245,757	-		Sama_3607	0.64	-1.1
4,245,757	-		Sama_3607	0.64	+0.8
4,245,757	-		Sama_3607	0.64	+0.6
4,245,757	-		Sama_3607	0.64	+0.2
4,245,757	-		Sama_3607	0.64	-1.7
4,245,757	-		Sama_3607	0.64	+1.4
4,245,757	-		Sama_3607	0.64	+1.1
4,245,757	-		Sama_3607	0.64	-0.2
4,245,778	+		Sama_3607	0.66	-1.5
4,245,778	+		Sama_3607	0.66	-0.1
4,245,779	-		Sama_3607	0.66	-2.1
4,245,779	-		Sama_3607	0.66	-0.2
4,245,779	-		Sama_3607	0.66	-3.2
4,245,818	+		Sama_3607	0.70	+1.0
4,245,818	+		Sama_3607	0.70	+2.5
4,245,818	+		Sama_3607	0.70	+2.1
4,245,819	-		Sama_3607	0.70	+0.1
4,245,819	-		Sama_3607	0.70	+1.3
4,245,819	-		Sama_3607	0.70	-0.7
4,245,819	-		Sama_3607	0.70	+0.7
4,245,819	-		Sama_3607	0.70	+0.8
4,245,819	-		Sama_3607	0.70	-1.7
4,245,819	-		Sama_3607	0.70	-0.9
4,245,852	+		Sama_3607	0.74	-0.9
4,245,852	+		Sama_3607	0.74	+1.8
4,245,852	+		Sama_3607	0.74	+0.7
4,245,853	-		Sama_3607	0.74	-0.5
4,245,853	-		Sama_3607	0.74	-0.2
4,245,853	-		Sama_3607	0.74	-1.8
4,245,853	-		Sama_3607	0.74	-1.9
4,245,925	+		Sama_3607	0.81	-1.8
4,245,925	+		Sama_3607	0.81	+0.8
4,245,925	+		Sama_3607	0.81	+0.3
4,245,925	+		Sama_3607	0.81	-1.1
4,245,925	+		Sama_3607	0.81	-2.2
4,245,926	-		Sama_3607	0.81	-0.7
4,245,926	-		Sama_3607	0.81	-0.5
4,245,929	+		Sama_3607	0.82	-0.0
4,245,929	+		Sama_3607	0.82	-1.5
4,245,929	+		Sama_3607	0.82	-1.4
4,245,929	+		Sama_3607	0.82	+3.4
4,245,930	-		Sama_3607	0.82	-0.1
4,245,930	-		Sama_3607	0.82	+0.4
4,245,930	-		Sama_3607	0.82	-0.7
4,245,930	-		Sama_3607	0.82	+1.2
4,245,930	-		Sama_3607	0.82	-0.3
4,245,930	-		Sama_3607	0.82	-0.8
4,245,930	-		Sama_3607	0.82	-2.9
4,245,930	-		Sama_3607	0.82	-1.6
4,245,930	-		Sama_3607	0.82	+1.3
4,245,935	+		Sama_3607	0.82	+0.4
4,245,936	-		Sama_3607	0.82	-0.7
4,245,936	-		Sama_3607	0.82	+0.1
4,245,936	-		Sama_3607	0.82	+0.1
4,245,936	-		Sama_3607	0.82	-0.8
4,245,936	-		Sama_3607	0.82	-0.1
4,245,970	+		Sama_3607	0.86	+0.1
4,246,068	+				+1.1
4,246,068	+				-0.7
4,246,069	-				-0.6
4,246,069	-				+0.8
4,246,110	+				-3.0
4,246,148	+				+0.1
4,246,148	+				-0.6
4,246,148	+				+1.2
4,246,148	+				-0.3
4,246,148	+				-1.2
4,246,148	+				-0.8
4,246,148	+				-0.5
4,246,148	+				+0.3
4,246,148	+				-1.1
4,246,148	+				+1.9
4,246,149	-				-1.6
4,246,149	-				+1.4
4,246,149	-				-0.3
4,246,149	-				-0.9
4,246,149	-				+0.4
4,246,149	-				+1.6
4,246,152	+				+0.6
4,246,152	+				-1.6
4,246,152	+				+1.4
4,246,152	+				+1.4
4,246,152	+				+1.3
4,246,153	-				-1.6
4,246,153	-				+0.4
4,246,153	-				-2.1
4,246,153	-				+0.4
4,246,153	-				-1.7
4,246,267	+		Sama_3608	0.20	-1.6
4,246,267	+		Sama_3608	0.20	-1.8
4,246,267	+		Sama_3608	0.20	+1.6
4,246,267	+		Sama_3608	0.20	+0.9
4,246,267	+		Sama_3608	0.20	+0.7
4,246,268	-		Sama_3608	0.21	-0.2
4,246,268	-		Sama_3608	0.21	-0.2
4,246,268	-		Sama_3608	0.21	-0.9
4,246,268	-		Sama_3608	0.21	-0.9
4,246,302	+		Sama_3608	0.26	+1.3
4,246,303	-		Sama_3608	0.27	-0.9
4,246,303	-		Sama_3608	0.27	-0.7
4,246,303	-		Sama_3608	0.27	+1.3
4,246,372	+		Sama_3608	0.39	+1.9
4,246,431	+		Sama_3608	0.49	+0.2
4,246,431	+		Sama_3608	0.49	-1.1
4,246,431	+		Sama_3608	0.49	+0.3
4,246,431	+		Sama_3608	0.49	+0.5
4,246,431	+		Sama_3608	0.49	-0.4
4,246,432	-		Sama_3608	0.49	+0.4
4,246,478	+		Sama_3608	0.57	-1.9
4,246,478	+		Sama_3608	0.57	-2.6
4,246,478	+		Sama_3608	0.57	-0.7
4,246,478	+		Sama_3608	0.57	-0.8
4,246,478	+		Sama_3608	0.57	-2.1
4,246,479	-		Sama_3608	0.58	-1.0
4,246,479	-		Sama_3608	0.58	+0.9
4,246,479	-		Sama_3608	0.58	+1.1
4,246,479	-		Sama_3608	0.58	-1.2
4,246,497	+		Sama_3608	0.61	-2.4
4,246,498	-		Sama_3608	0.61	-1.5
4,246,651	+		Sama_3608	0.88	+2.9
4,246,651	+		Sama_3608	0.88	-1.3
4,246,651	+		Sama_3608	0.88	+0.1
4,246,714	+				-1.6
4,246,728	+				-1.1
4,246,729	-				+1.1
4,246,729	-				-0.4
4,246,735	+				-1.9
4,246,736	-				+0.1
4,246,757	+				+0.6
4,246,758	-				-1.3
4,246,760	+				-1.1
4,246,760	+				-2.7
4,246,761	-				-0.2
4,246,761	-				+0.7
4,246,761	-				-2.6
4,246,809	+				+0.5
4,246,809	+				-1.6
4,246,815	+				+0.7
4,246,815	+				-1.2
4,246,815	+				+2.1
4,246,816	-				-0.4
4,246,816	-				+0.9
4,246,816	-				+0.8
4,246,816	-				+0.2
4,246,816	-				-1.3
4,246,816	-				+0.4
4,246,816	-				+0.9
4,246,816	-				-0.9
4,246,851	+				+0.3
4,246,851	+				-2.3
4,246,851	+				+0.8
4,246,851	+				+0.5
4,246,852	-				-1.3
4,246,852	-				+0.3
4,246,873	-				+2.1
4,246,917	+				-0.9
4,246,917	+				-0.1
4,246,925	-				-2.1
4,246,925	-				-2.1
4,246,925	-				+0.9
4,246,944	-				-1.2
4,247,124	+		Sama_3609	0.13	+0.4
4,247,125	-		Sama_3609	0.13	+1.5
4,247,160	+		Sama_3609	0.14	+0.4
4,247,196	+		Sama_3609	0.16	-1.6
4,247,196	+		Sama_3609	0.16	-1.5
4,247,203	+		Sama_3609	0.16	-0.7
4,247,232	+		Sama_3609	0.17	-0.7
4,247,232	+		Sama_3609	0.17	+0.4
4,247,233	-		Sama_3609	0.17	-1.4
4,247,233	-		Sama_3609	0.17	+0.8
4,247,233	-		Sama_3609	0.17	+1.5
4,247,233	-		Sama_3609	0.17	-2.6
4,247,233	-		Sama_3609	0.17	-0.7
4,247,241	+		Sama_3609	0.17	-2.1
4,247,241	+		Sama_3609	0.17	-0.6
4,247,242	-		Sama_3609	0.17	-3.0
4,247,269	+		Sama_3609	0.18	+0.9
4,247,269	+		Sama_3609	0.18	+1.6
4,247,270	-		Sama_3609	0.18	-1.3
4,247,270	-		Sama_3609	0.18	-1.7
4,247,270	-		Sama_3609	0.18	+1.0
4,247,271	+		Sama_3609	0.18	-0.7
4,247,271	+		Sama_3609	0.18	-2.5
4,247,271	+		Sama_3609	0.18	+1.6
4,247,271	+		Sama_3609	0.18	-1.9
4,247,272	-		Sama_3609	0.18	-1.0
4,247,272	-		Sama_3609	0.18	+0.5
4,247,272	-		Sama_3609	0.18	+0.5
4,247,272	-		Sama_3609	0.18	-2.1
4,247,272	-		Sama_3609	0.18	+3.1
4,247,350	+		Sama_3609	0.21	+1.3
4,247,350	+		Sama_3609	0.21	-3.4
4,247,350	+		Sama_3609	0.21	+0.9
4,247,351	-		Sama_3609	0.21	+0.3
4,247,351	-		Sama_3609	0.21	+2.1
4,247,351	-		Sama_3609	0.21	+0.6
4,247,473	+		Sama_3609	0.25	-0.1
4,247,556	+		Sama_3609	0.28	+0.0
4,247,556	+		Sama_3609	0.28	-0.7
4,247,557	-		Sama_3609	0.28	-2.0
4,247,557	-		Sama_3609	0.28	-1.1
4,247,617	+		Sama_3609	0.30	+0.3
4,247,618	-		Sama_3609	0.30	+2.0
4,247,619	+		Sama_3609	0.31	-2.8
4,247,619	+		Sama_3609	0.31	-1.5
4,247,619	+		Sama_3609	0.31	+0.8
4,247,619	+		Sama_3609	0.31	+0.5
4,247,619	+		Sama_3609	0.31	-0.1
4,247,620	-		Sama_3609	0.31	+2.6
4,247,620	-		Sama_3609	0.31	-1.6
4,247,620	-		Sama_3609	0.31	-0.8
4,247,620	-		Sama_3609	0.31	-2.1
4,247,620	-		Sama_3609	0.31	+0.6
4,247,620	-		Sama_3609	0.31	-2.1
4,247,620	-		Sama_3609	0.31	+0.6
4,247,682	+		Sama_3609	0.33	-1.5
4,247,682	+		Sama_3609	0.33	-1.7
4,247,682	+		Sama_3609	0.33	+2.1
4,247,682	+		Sama_3609	0.33	+0.0
4,247,682	+		Sama_3609	0.33	-0.8
4,247,682	+		Sama_3609	0.33	-1.4
4,247,683	-		Sama_3609	0.33	+1.1
4,247,683	-		Sama_3609	0.33	-2.1
4,247,683	-		Sama_3609	0.33	-0.1
4,247,695	+		Sama_3609	0.33	-0.1
4,247,695	+		Sama_3609	0.33	+1.8
4,247,695	+		Sama_3609	0.33	-1.3
4,247,695	+		Sama_3609	0.33	+2.2
4,247,695	+		Sama_3609	0.33	-0.2
4,247,695	+		Sama_3609	0.33	+0.0
4,247,695	+		Sama_3609	0.33	+0.1
4,247,696	-		Sama_3609	0.33	-0.5
4,247,696	-		Sama_3609	0.33	+1.5
4,247,696	-		Sama_3609	0.33	+3.9
4,247,696	-		Sama_3609	0.33	-0.8
4,247,696	-		Sama_3609	0.33	-1.2
4,247,696	-		Sama_3609	0.33	-1.3
4,247,696	-		Sama_3609	0.33	+1.4