Strain Fitness in Shewanella amazonensis SB2B around Sama_3557

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
4,190,328	+				-2.0
4,190,382	+		Sama_3556	0.14	+3.5
4,190,394	+		Sama_3556	0.16	-1.7
4,190,457	+		Sama_3556	0.22	-0.2
4,190,458	-		Sama_3556	0.22	+1.0
4,190,458	-		Sama_3556	0.22	+0.5
4,190,458	-		Sama_3556	0.22	+1.2
4,190,458	-		Sama_3556	0.22	-1.8
4,190,489	+		Sama_3556	0.25	+1.4
4,190,490	-		Sama_3556	0.25	-0.8
4,190,500	+		Sama_3556	0.26	-2.9
4,190,501	-		Sama_3556	0.26	-1.1
4,190,611	+		Sama_3556	0.37	+1.1
4,190,681	+		Sama_3556	0.44	-1.5
4,190,681	+		Sama_3556	0.44	+1.6
4,190,681	+		Sama_3556	0.44	-1.2
4,190,681	+		Sama_3556	0.44	-1.0
4,190,681	+		Sama_3556	0.44	-1.1
4,190,681	+		Sama_3556	0.44	-0.7
4,190,682	-		Sama_3556	0.44	-2.0
4,190,682	-		Sama_3556	0.44	-1.3
4,190,682	-		Sama_3556	0.44	+0.3
4,190,682	-		Sama_3556	0.44	-0.8
4,190,685	+		Sama_3556	0.45	-0.2
4,190,685	+		Sama_3556	0.45	+1.1
4,190,686	-		Sama_3556	0.45	-1.1
4,190,686	-		Sama_3556	0.45	-0.9
4,190,686	-		Sama_3556	0.45	+0.3
4,190,705	+		Sama_3556	0.47	+1.1
4,190,778	+		Sama_3556	0.54	+0.9
4,190,779	-		Sama_3556	0.54	-0.7
4,190,779	-		Sama_3556	0.54	+0.3
4,190,779	-		Sama_3556	0.54	-1.9
4,190,801	+		Sama_3556	0.56	+0.8
4,190,802	-		Sama_3556	0.56	-0.8
4,190,810	+		Sama_3556	0.57	+0.5
4,190,811	-		Sama_3556	0.57	-0.6
4,190,871	-		Sama_3556	0.63	+0.2
4,190,913	+		Sama_3556	0.67	-2.3
4,190,967	+		Sama_3556	0.73	-0.1
4,190,967	+		Sama_3556	0.73	-0.2
4,190,967	+		Sama_3556	0.73	-3.2
4,190,967	+		Sama_3556	0.73	-0.2
4,190,967	+		Sama_3556	0.73	-1.1
4,190,967	+		Sama_3556	0.73	-1.1
4,190,967	+		Sama_3556	0.73	+0.8
4,190,968	-		Sama_3556	0.73	-0.9
4,190,968	-		Sama_3556	0.73	+0.8
4,190,968	-		Sama_3556	0.73	-1.2
4,191,039	+		Sama_3556	0.80	+3.9
4,191,039	+		Sama_3556	0.80	+1.3
4,191,039	+		Sama_3556	0.80	-0.4
4,191,039	+		Sama_3556	0.80	+0.3
4,191,081	+		Sama_3556	0.84	-1.7
4,191,169	-				+1.0
4,191,179	+				+0.7
4,191,217	-				+0.5
4,191,220	-				-1.9
4,191,220	-				+0.8
4,191,220	-				-0.4
4,191,261	+				-1.6
4,191,292	+				-0.7
4,191,292	+				+2.2
4,191,292	+				+0.7
4,191,292	+				+0.9
4,191,293	-				-0.4
4,191,293	-				-0.5
4,191,293	-				-1.7
4,191,293	-				+2.1
4,191,293	-				+1.3
4,191,420	-		Sama_3557	0.29	-0.5
4,191,420	-		Sama_3557	0.29	-1.1
4,191,434	+		Sama_3557	0.32	-0.8
4,191,451	+		Sama_3557	0.36	-0.9
4,191,451	+		Sama_3557	0.36	-2.1
4,191,451	+		Sama_3557	0.36	-1.6
4,191,451	+		Sama_3557	0.36	+1.4
4,191,452	-		Sama_3557	0.36	-1.6
4,191,452	-		Sama_3557	0.36	+3.1
4,191,515	+		Sama_3557	0.50	-1.7
4,191,515	+		Sama_3557	0.50	-3.0
4,191,542	+		Sama_3557	0.56	+0.4
4,191,542	+		Sama_3557	0.56	+0.9
4,191,608	+		Sama_3557	0.70	+0.1
4,191,608	+		Sama_3557	0.70	+2.1
4,191,609	-		Sama_3557	0.71	-1.5
4,191,609	-		Sama_3557	0.71	+1.6
4,191,609	-		Sama_3557	0.71	+1.5
4,191,609	-		Sama_3557	0.71	-0.1
4,191,630	+		Sama_3557	0.75	+0.1
4,191,630	+		Sama_3557	0.75	+2.1
4,191,630	+		Sama_3557	0.75	+1.0
4,191,630	+		Sama_3557	0.75	+0.6
4,191,630	+		Sama_3557	0.75	+0.3
4,191,630	+		Sama_3557	0.75	+2.9
4,191,630	+		Sama_3557	0.75	-0.5
4,191,630	+		Sama_3557	0.75	-0.5
4,191,630	+		Sama_3557	0.75	+1.3
4,191,630	+		Sama_3557	0.75	+0.8
4,191,631	-		Sama_3557	0.76	-0.6
4,191,631	-		Sama_3557	0.76	-0.5
4,191,631	-		Sama_3557	0.76	+0.8
4,191,631	-		Sama_3557	0.76	-0.6
4,191,631	-		Sama_3557	0.76	+0.5
4,191,631	-		Sama_3557	0.76	+1.9
4,191,631	-		Sama_3557	0.76	+1.1
4,191,631	-		Sama_3557	0.76	-0.8
4,191,631	-		Sama_3557	0.76	-2.6
4,191,631	-		Sama_3557	0.76	-2.0
4,191,631	-		Sama_3557	0.76	-0.3
4,191,698	+				+0.4
4,191,699	-				-0.2
4,191,764	+				-2.1
4,191,764	+				+1.4
4,191,764	+				-1.5
4,191,764	+				-0.8
4,191,764	+				-1.2
4,191,764	+				+0.1
4,191,764	+				-2.0
4,191,764	+				+0.5
4,191,764	+				+0.5
4,191,764	+				+0.6
4,191,765	-				+3.0
4,191,765	-				-2.6
4,191,765	-				-1.5
4,191,765	-				-1.7
4,191,765	-				-2.3
4,191,765	-				-2.1
4,191,765	-				+0.5
4,191,765	-				-1.7
4,191,765	-				+0.3
4,191,765	-				+0.9
4,191,765	-				+0.2
4,191,765	-				-1.1
4,191,765	-				-0.1
4,191,765	-				-0.2
4,191,765	-				-1.3
4,191,765	-				+0.5
4,191,765	-				-0.5
4,191,765	-				-0.9
4,191,766	+				+0.8
4,191,767	-				+1.2
4,191,767	-				+0.3
4,191,815	-				+0.6
4,191,826	+				-1.9
4,191,880	+				+0.4
4,191,911	+				-2.8
4,191,911	+				-1.1
4,191,911	+				+0.5
4,191,911	+				+1.5
4,191,911	+				+0.0
4,191,911	+				+1.5
4,191,911	+				-0.9
4,191,911	+				+2.0
4,191,911	+				-0.5
4,191,911	+				+1.7
4,191,911	+				+0.7
4,191,911	+				-0.2
4,191,912	-				-0.5
4,191,912	-				+0.3
4,191,912	-				-0.5
4,191,912	-				-0.2
4,191,912	-				-1.1
4,191,912	-				-0.2
4,191,912	-				+1.2
4,191,946	+				+0.4
4,191,946	+				+0.3
4,191,959	+				-1.2
4,191,959	+				-3.4
4,191,960	-				+0.6
4,191,967	-				+0.1
4,191,967	-				-0.1
4,191,968	+				-0.1
4,191,980	-				+0.3
4,191,985	+				+1.1
4,191,986	-				-3.1
4,191,992	+				-0.1
4,192,000	+				-0.2
4,192,000	+				+0.8
4,192,000	+				+0.5
4,192,001	-				+1.1
4,192,013	+				-0.9
4,192,013	+				-0.8
4,192,014	-				-1.7
4,192,200	-		Sama_3558	0.14	+2.1
4,192,338	+		Sama_3558	0.25	-1.3
4,192,338	+		Sama_3558	0.25	-1.1
4,192,338	+		Sama_3558	0.25	-1.1
4,192,338	+		Sama_3558	0.25	-1.8
4,192,339	-		Sama_3558	0.25	-1.6
4,192,368	+		Sama_3558	0.27	-1.7
4,192,368	+		Sama_3558	0.27	+0.6
4,192,368	+		Sama_3558	0.27	-1.5
4,192,368	+		Sama_3558	0.27	+1.8
4,192,368	+		Sama_3558	0.27	+0.9
4,192,368	+		Sama_3558	0.27	+0.1
4,192,368	+		Sama_3558	0.27	-0.3
4,192,368	+		Sama_3558	0.27	-0.5
4,192,368	+		Sama_3558	0.27	+1.7
4,192,368	+		Sama_3558	0.27	-1.4
4,192,368	+		Sama_3558	0.27	-0.3
4,192,368	+		Sama_3558	0.27	-0.4
4,192,368	+		Sama_3558	0.27	+1.3
4,192,368	+		Sama_3558	0.27	-1.1
4,192,369	-		Sama_3558	0.27	-0.7
4,192,369	-		Sama_3558	0.27	-3.0
4,192,369	-		Sama_3558	0.27	-0.4
4,192,369	-		Sama_3558	0.27	-1.2
4,192,369	-		Sama_3558	0.27	+0.5
4,192,369	-		Sama_3558	0.27	+0.5
4,192,369	-		Sama_3558	0.27	-0.5
4,192,369	-		Sama_3558	0.27	+0.7
4,192,369	-		Sama_3558	0.27	-0.9
4,192,369	-		Sama_3558	0.27	-0.2
4,192,369	-		Sama_3558	0.27	-0.7
4,192,371	+		Sama_3558	0.27	-0.4
4,192,371	+		Sama_3558	0.27	-1.1
4,192,371	+		Sama_3558	0.27	+2.1
4,192,371	+		Sama_3558	0.27	+0.7
4,192,371	+		Sama_3558	0.27	+0.5
4,192,371	+		Sama_3558	0.27	-0.8
4,192,372	-		Sama_3558	0.27	+1.0
4,192,372	-		Sama_3558	0.27	+1.6
4,192,372	-		Sama_3558	0.27	-0.6
4,192,372	-		Sama_3558	0.27	+1.4
4,192,372	-		Sama_3558	0.27	-2.9
4,192,372	-		Sama_3558	0.27	-0.3
4,192,372	-		Sama_3558	0.27	-1.0
4,192,372	-		Sama_3558	0.27	+1.2
4,192,372	-		Sama_3558	0.27	+1.8
4,192,398	+		Sama_3558	0.29	-1.5
4,192,398	+		Sama_3558	0.29	+1.7
4,192,398	+		Sama_3558	0.29	+1.0
4,192,398	+		Sama_3558	0.29	+2.6
4,192,398	+		Sama_3558	0.29	+0.8
4,192,398	+		Sama_3558	0.29	-2.1
4,192,398	+		Sama_3558	0.29	-1.2
4,192,398	+		Sama_3558	0.29	+1.5
4,192,399	-		Sama_3558	0.29	-1.7
4,192,399	-		Sama_3558	0.29	-2.7
4,192,399	-		Sama_3558	0.29	+1.1
4,192,399	-		Sama_3558	0.29	+0.5
4,192,399	-		Sama_3558	0.29	+1.7
4,192,399	-		Sama_3558	0.29	-0.7
4,192,458	-		Sama_3558	0.33	+1.6
4,192,464	-		Sama_3558	0.34	-0.6
4,192,509	+		Sama_3558	0.37	-0.2
4,192,509	+		Sama_3558	0.37	+2.1
4,192,509	+		Sama_3558	0.37	-0.8
4,192,509	+		Sama_3558	0.37	+0.5
4,192,510	-		Sama_3558	0.37	-2.4
4,192,510	-		Sama_3558	0.37	-1.3
4,192,510	-		Sama_3558	0.37	+2.3
4,192,510	-		Sama_3558	0.37	+0.5
4,192,510	-		Sama_3558	0.37	-0.5
4,192,515	+		Sama_3558	0.38	+0.9
4,192,515	+		Sama_3558	0.38	+0.5
4,192,515	+		Sama_3558	0.38	-1.7
4,192,515	+		Sama_3558	0.38	-0.2
4,192,515	+		Sama_3558	0.38	-0.2
4,192,515	+		Sama_3558	0.38	-1.3
4,192,516	-		Sama_3558	0.38	-2.9
4,192,516	-		Sama_3558	0.38	+3.6
4,192,516	-		Sama_3558	0.38	-1.3
4,192,516	-		Sama_3558	0.38	+0.1
4,192,516	-		Sama_3558	0.38	-0.6
4,192,516	-		Sama_3558	0.38	-2.1
4,192,516	-		Sama_3558	0.38	-1.3
4,192,579	+		Sama_3558	0.42	+0.9
4,192,579	+		Sama_3558	0.42	-1.2
4,192,579	+		Sama_3558	0.42	-2.5
4,192,580	-		Sama_3558	0.42	-0.9
4,192,580	-		Sama_3558	0.42	-2.6
4,192,580	-		Sama_3558	0.42	+1.3
4,192,580	-		Sama_3558	0.42	-0.7
4,192,580	-		Sama_3558	0.42	-1.2
4,192,599	+		Sama_3558	0.44	+1.5
4,192,599	+		Sama_3558	0.44	+2.8
4,192,600	-		Sama_3558	0.44	+0.3
4,192,600	-		Sama_3558	0.44	+1.5
4,192,600	-		Sama_3558	0.44	-0.5
4,192,614	+		Sama_3558	0.45	-1.2
4,192,615	-		Sama_3558	0.45	-1.7
4,192,663	+		Sama_3558	0.49	+0.1
4,192,663	+		Sama_3558	0.49	+0.1
4,192,663	+		Sama_3558	0.49	+0.7
4,192,664	-		Sama_3558	0.49	-0.1
4,192,684	+		Sama_3558	0.50	+2.0
4,192,684	+		Sama_3558	0.50	-3.1
4,192,696	+		Sama_3558	0.51	+0.1
4,192,697	-		Sama_3558	0.51	+0.7
4,192,697	-		Sama_3558	0.51	-2.3
4,192,697	-		Sama_3558	0.51	-0.9
4,192,712	+		Sama_3558	0.52	-2.2
4,192,712	+		Sama_3558	0.52	+0.5