Strain Fitness in Shewanella amazonensis SB2B around Sama_3541

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
4,172,558	-		Sama_3540	0.75	+0.1
4,172,558	-		Sama_3540	0.75	+0.7
4,172,558	-		Sama_3540	0.75	+1.1
4,172,669	-		Sama_3540	0.80	+1.3
4,172,733	+		Sama_3540	0.82	-0.3
4,172,733	+		Sama_3540	0.82	+3.4
4,172,733	+		Sama_3540	0.82	-1.3
4,172,733	+		Sama_3540	0.82	+1.1
4,172,733	+		Sama_3540	0.82	-0.4
4,172,733	+		Sama_3540	0.82	+1.1
4,172,734	-		Sama_3540	0.82	+1.4
4,172,734	-		Sama_3540	0.82	+1.2
4,172,734	-		Sama_3540	0.82	+0.9
4,172,734	-		Sama_3540	0.82	-0.5
4,172,734	-		Sama_3540	0.82	+1.2
4,172,734	-		Sama_3540	0.82	-0.6
4,172,734	-		Sama_3540	0.82	-1.7
4,172,756	+		Sama_3540	0.83	-0.3
4,172,756	+		Sama_3540	0.83	+1.3
4,172,756	+		Sama_3540	0.83	-0.2
4,172,757	-		Sama_3540	0.83	+1.4
4,172,773	+		Sama_3540	0.84	-1.0
4,172,773	+		Sama_3540	0.84	+0.9
4,172,773	+		Sama_3540	0.84	-1.4
4,172,774	-		Sama_3540	0.84	-0.8
4,172,774	-		Sama_3540	0.84	+0.3
4,172,795	+		Sama_3540	0.85	-2.0
4,172,795	+		Sama_3540	0.85	-1.9
4,172,795	+		Sama_3540	0.85	-2.5
4,172,795	+		Sama_3540	0.85	-0.4
4,172,795	+		Sama_3540	0.85	-2.6
4,172,795	+		Sama_3540	0.85	-1.2
4,172,795	+		Sama_3540	0.85	+0.1
4,172,795	+		Sama_3540	0.85	-1.5
4,172,796	-		Sama_3540	0.85	-1.5
4,172,796	-		Sama_3540	0.85	+0.7
4,172,796	-		Sama_3540	0.85	+1.2
4,172,796	-		Sama_3540	0.85	-0.1
4,172,796	-		Sama_3540	0.85	-0.7
4,172,840	-		Sama_3540	0.87	-2.6
4,172,933	-				+1.1
4,172,933	-				-1.6
4,172,966	+				+0.5
4,173,042	+				-2.1
4,173,043	-				-2.1
4,173,043	-				-0.5
4,173,043	-				-0.5
4,173,043	-				-1.0
4,173,045	+				+0.6
4,173,066	+				+0.5
4,173,066	+				+0.1
4,173,067	-				+0.3
4,173,067	-				+0.2
4,173,092	-				+0.5
4,173,092	-				-1.2
4,173,092	-				-2.2
4,173,092	-				-1.5
4,173,092	-				-2.4
4,173,209	+				+1.9
4,173,209	+				+0.8
4,173,231	+				+0.1
4,173,303	+				+1.4
4,173,303	+				-2.9
4,173,303	+				-0.9
4,173,303	+				+1.1
4,173,303	+				-3.0
4,173,303	+				-1.8
4,173,303	+				-2.6
4,173,303	+				-0.7
4,173,304	-				+0.6
4,173,304	-				-0.8
4,173,304	-				-1.8
4,173,304	-				+1.2
4,173,462	+		Sama_3541	0.25	+2.9
4,173,462	+		Sama_3541	0.25	-0.6
4,173,463	-		Sama_3541	0.25	+1.6
4,173,463	-		Sama_3541	0.25	+2.8
4,173,463	-		Sama_3541	0.25	+0.1
4,173,463	-		Sama_3541	0.25	-1.7
4,173,463	-		Sama_3541	0.25	-1.8
4,173,463	-		Sama_3541	0.25	-0.5
4,173,463	-		Sama_3541	0.25	-2.5
4,173,498	+		Sama_3541	0.29	+0.1
4,173,499	-		Sama_3541	0.29	-0.4
4,173,648	-		Sama_3541	0.46	-1.0
4,173,648	-		Sama_3541	0.46	+0.1
4,173,699	+		Sama_3541	0.52	+1.5
4,173,700	-		Sama_3541	0.52	-1.7
4,173,700	-		Sama_3541	0.52	-1.5
4,173,747	+		Sama_3541	0.57	+0.8
4,173,747	+		Sama_3541	0.57	-0.4
4,173,748	-		Sama_3541	0.57	+0.1
4,173,991	+		Sama_3541	0.84	-1.8
4,173,991	+		Sama_3541	0.84	-1.2
4,173,991	+		Sama_3541	0.84	+0.9
4,173,992	-		Sama_3541	0.85	+3.1
4,173,992	-		Sama_3541	0.85	+2.9
4,173,992	-		Sama_3541	0.85	+1.7
4,173,992	-		Sama_3541	0.85	-0.8
4,174,152	+				+0.8
4,174,152	+				-2.2
4,174,152	+				+0.5
4,174,152	+				+1.9
4,174,153	-				+0.8
4,174,153	-				-2.3
4,174,153	-				+0.8
4,174,153	-				+0.0
4,174,153	-				+2.1
4,174,180	+				+0.0
4,174,180	+				-1.7
4,174,181	-				-1.3
4,174,181	-				-0.3
4,174,181	-				-1.9
4,174,197	+				-0.6
4,174,197	+				+0.7
4,174,198	-				+1.1
4,174,198	-				-1.4
4,174,198	-				+0.7
4,174,263	+		Sama_3542	0.17	+0.5
4,174,263	+		Sama_3542	0.17	+2.1
4,174,263	+		Sama_3542	0.17	+0.9
4,174,264	-		Sama_3542	0.17	-1.8
4,174,264	-		Sama_3542	0.17	-2.6
4,174,264	-		Sama_3542	0.17	+0.8
4,174,275	+		Sama_3542	0.20	-2.1
4,174,275	+		Sama_3542	0.20	-3.6
4,174,275	+		Sama_3542	0.20	+1.4
4,174,275	+		Sama_3542	0.20	-1.7
4,174,275	+		Sama_3542	0.20	-0.7
4,174,275	+		Sama_3542	0.20	+0.1
4,174,275	+		Sama_3542	0.20	-2.4
4,174,276	-		Sama_3542	0.20	-2.4
4,174,276	-		Sama_3542	0.20	+0.2
4,174,286	+		Sama_3542	0.23	-1.0
4,174,286	+		Sama_3542	0.23	+1.3
4,174,287	-		Sama_3542	0.23	-0.9
4,174,309	+		Sama_3542	0.29	+1.5
4,174,309	+		Sama_3542	0.29	-1.1
4,174,310	-		Sama_3542	0.29	-0.2
4,174,335	+		Sama_3542	0.35	+0.5
4,174,335	+		Sama_3542	0.35	-2.8
4,174,336	-		Sama_3542	0.35	+0.3
4,174,536	+		Sama_3542	0.86	+0.3
4,174,537	-		Sama_3542	0.86	+0.4
4,174,537	-		Sama_3542	0.86	+2.1
4,174,537	-		Sama_3542	0.86	-0.2
4,174,557	+				-0.2
4,174,557	+				-1.6
4,174,557	+				-0.2
4,174,557	+				-1.9
4,174,557	+				-1.9
4,174,557	+				+0.8
4,174,558	-				-0.8
4,174,558	-				-1.2
4,174,558	-				+0.0
4,174,569	+				-2.1
4,174,569	+				-0.5
4,174,569	+				+0.9
4,174,569	+				+1.5
4,174,569	+				-1.5
4,174,569	+				-1.3
4,174,570	-				+1.2
4,174,570	-				+0.5
4,174,570	-				+2.8
4,174,570	-				+1.5
4,174,570	-				+0.5
4,174,570	-				-0.3
4,174,573	+				+0.7
4,174,573	+				-0.2
4,174,574	-				-1.1
4,174,574	-				+0.5
4,174,617	+				-0.5
4,174,617	+				-0.3
4,174,617	+				+0.7
4,174,618	-				-0.1
4,174,618	-				+0.4
4,174,618	-				-0.5
4,174,618	-				-0.3
4,174,644	+				+2.5
4,174,645	-				+0.5
4,174,650	+				-1.2
4,174,650	+				-0.7
4,174,650	+				+0.5
4,174,650	+				-1.3
4,174,650	+				+1.3
4,174,651	-				-2.1
4,174,651	-				+0.7
4,174,651	-				+0.4
4,174,651	-				-0.5
4,174,685	+				-0.6
4,174,686	-				+1.6
4,174,698	+				-0.3
4,174,698	+				+0.9
4,174,698	+				-0.2
4,174,699	-				-1.8
4,174,699	-				-1.4
4,174,701	+				-0.5
4,174,701	+				+0.4
4,174,701	+				-1.1
4,174,701	+				+0.9
4,174,701	+				+0.2
4,174,701	+				+1.7
4,174,701	+				-1.9
4,174,702	-				+2.9
4,174,702	-				+0.0
4,174,702	-				-0.7
4,174,702	-				-2.3
4,174,702	-				+0.1
4,174,702	-				-0.4
4,174,732	-				+0.9
4,174,735	+				+2.2
4,174,735	+				-1.1
4,174,735	+				-0.1
4,174,735	+				-1.9
4,174,735	+				-1.6
4,174,735	+				-1.2
4,174,735	+				-0.6
4,174,735	+				-0.8
4,174,735	+				-2.1
4,174,735	+				+2.5
4,174,735	+				+1.0
4,174,736	-				-0.9
4,174,736	-				+3.0
4,174,736	-				-1.3
4,174,736	-				+0.5
4,174,736	-				+0.5
4,174,736	-				-0.2
4,174,736	-				-1.9
4,174,907	+		Sama_3543	0.16	+0.8
4,174,907	+		Sama_3543	0.16	-2.1
4,174,907	+		Sama_3543	0.16	-1.1
4,174,907	+		Sama_3543	0.16	+3.7
4,174,907	+		Sama_3543	0.16	+1.0
4,174,907	+		Sama_3543	0.16	-1.6
4,174,907	+		Sama_3543	0.16	-1.2
4,174,907	+		Sama_3543	0.16	+0.5
4,174,907	+		Sama_3543	0.16	+1.9
4,174,908	-		Sama_3543	0.16	+1.2
4,174,908	-		Sama_3543	0.16	-1.6
4,174,908	-		Sama_3543	0.16	+1.6
4,174,908	-		Sama_3543	0.16	-2.3
4,174,908	-		Sama_3543	0.16	-1.5
4,174,908	-		Sama_3543	0.16	+1.0
4,174,908	-		Sama_3543	0.16	+1.5
4,174,931	+		Sama_3543	0.18	+0.5
4,174,931	+		Sama_3543	0.18	+0.1
4,174,931	+		Sama_3543	0.18	+0.0
4,174,931	+		Sama_3543	0.18	-0.2
4,174,931	+		Sama_3543	0.18	+2.3
4,174,932	-		Sama_3543	0.18	+2.3
4,174,932	-		Sama_3543	0.18	+1.1
4,174,932	-		Sama_3543	0.18	-0.1
4,174,932	-		Sama_3543	0.18	+1.4
4,174,932	-		Sama_3543	0.18	-1.0
4,174,932	-		Sama_3543	0.18	+1.9
4,174,932	-		Sama_3543	0.18	-0.5
4,174,955	+		Sama_3543	0.20	-0.2
4,174,955	+		Sama_3543	0.20	+0.9
4,174,997	-		Sama_3543	0.23	+0.4
4,175,014	+		Sama_3543	0.24	-0.7
4,175,014	+		Sama_3543	0.24	-0.5
4,175,015	-		Sama_3543	0.24	+0.6
4,175,015	-		Sama_3543	0.24	+0.5
4,175,036	+		Sama_3543	0.26	-0.2
4,175,037	-		Sama_3543	0.26	-1.6
4,175,037	-		Sama_3543	0.26	-0.5
4,175,037	-		Sama_3543	0.26	-0.6
4,175,112	+		Sama_3543	0.31	+0.7
4,175,112	+		Sama_3543	0.31	+0.5
4,175,121	+		Sama_3543	0.32	-1.5