Strain Fitness in Shewanella amazonensis SB2B around Sama_3445

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
4,075,793	-		Sama_3444	0.42	-2.7
4,075,864	+		Sama_3444	0.47	+0.4
4,075,894	+		Sama_3444	0.49	+0.2
4,075,894	+		Sama_3444	0.49	+0.4
4,075,894	+		Sama_3444	0.49	+2.1
4,075,895	-		Sama_3444	0.49	-0.2
4,075,895	-		Sama_3444	0.49	+2.1
4,075,895	-		Sama_3444	0.49	+1.0
4,075,895	-		Sama_3444	0.49	-1.1
4,075,950	+		Sama_3444	0.53	-1.1
4,075,950	+		Sama_3444	0.53	+0.3
4,075,950	+		Sama_3444	0.53	-0.7
4,075,951	-		Sama_3444	0.54	-0.3
4,075,951	-		Sama_3444	0.54	+1.1
4,075,951	-		Sama_3444	0.54	-0.5
4,075,951	-		Sama_3444	0.54	+0.4
4,075,953	+		Sama_3444	0.54	-1.0
4,075,953	+		Sama_3444	0.54	-0.5
4,075,953	+		Sama_3444	0.54	-2.3
4,075,954	-		Sama_3444	0.54	+0.9
4,075,954	-		Sama_3444	0.54	-0.0
4,075,954	-		Sama_3444	0.54	+0.7
4,075,954	-		Sama_3444	0.54	-0.4
4,075,954	-		Sama_3444	0.54	-0.7
4,075,966	-		Sama_3444	0.55	+2.4
4,075,966	-		Sama_3444	0.55	-0.5
4,075,999	+		Sama_3444	0.57	-1.3
4,076,000	-		Sama_3444	0.57	-2.8
4,076,000	-		Sama_3444	0.57	-1.5
4,076,032	-		Sama_3444	0.60	-0.4
4,076,032	-		Sama_3444	0.60	-0.2
4,076,051	+		Sama_3444	0.61	-0.7
4,076,051	+		Sama_3444	0.61	+0.8
4,076,051	+		Sama_3444	0.61	-0.9
4,076,052	-		Sama_3444	0.61	-1.1
4,076,052	-		Sama_3444	0.61	+1.4
4,076,059	+		Sama_3444	0.62	-1.8
4,076,059	+		Sama_3444	0.62	+0.4
4,076,060	-		Sama_3444	0.62	-0.0
4,076,232	+		Sama_3444	0.75	+0.4
4,076,233	-		Sama_3444	0.75	-0.5
4,076,233	-		Sama_3444	0.75	-2.4
4,076,233	-		Sama_3444	0.75	-1.0
4,076,251	+		Sama_3444	0.76	-1.2
4,076,252	-		Sama_3444	0.76	-3.0
4,076,252	-		Sama_3444	0.76	-0.5
4,076,256	+		Sama_3444	0.76	+0.6
4,076,256	+		Sama_3444	0.76	-0.9
4,076,256	+		Sama_3444	0.76	-1.5
4,076,256	+		Sama_3444	0.76	-0.5
4,076,257	-		Sama_3444	0.77	-0.1
4,076,313	+		Sama_3444	0.81	+0.5
4,076,313	+		Sama_3444	0.81	-1.0
4,076,314	-		Sama_3444	0.81	+1.9
4,076,365	+		Sama_3444	0.85	-0.3
4,076,409	+		Sama_3444	0.88	-0.5
4,076,409	+		Sama_3444	0.88	-0.9
4,076,409	+		Sama_3444	0.88	-0.9
4,076,409	+		Sama_3444	0.88	+0.6
4,076,409	+		Sama_3444	0.88	-2.0
4,076,409	+		Sama_3444	0.88	-0.4
4,076,409	+		Sama_3444	0.88	-0.1
4,076,409	+		Sama_3444	0.88	-0.0
4,076,409	+		Sama_3444	0.88	-0.5
4,076,409	+		Sama_3444	0.88	-0.7
4,076,410	-		Sama_3444	0.88	-1.9
4,076,410	-		Sama_3444	0.88	+0.6
4,076,410	-		Sama_3444	0.88	+0.3
4,076,410	-		Sama_3444	0.88	-2.9
4,076,410	-		Sama_3444	0.88	-1.3
4,076,410	-		Sama_3444	0.88	+0.5
4,076,464	+				+0.7
4,076,473	+				-1.1
4,076,473	+				+0.3
4,076,473	+				-0.0
4,076,556	-				+1.0
4,076,588	+				+0.5
4,076,589	-				+0.0
4,076,592	+				+1.4
4,076,593	-				-0.1
4,076,593	-				-2.1
4,076,593	-				-0.5
4,076,601	+				+2.1
4,076,602	-				-0.7
4,076,626	-				-1.0
4,076,763	+				-0.7
4,076,763	+				+0.4
4,076,764	-				+0.7
4,076,764	-				-0.0
4,076,764	-				-2.5
4,076,803	+				+2.1
4,076,865	+		Sama_3445	0.15	-1.8
4,076,866	-		Sama_3445	0.15	+1.5
4,076,875	+		Sama_3445	0.16	-0.5
4,076,875	+		Sama_3445	0.16	+1.2
4,076,875	+		Sama_3445	0.16	-2.2
4,076,876	-		Sama_3445	0.16	-1.6
4,076,893	+		Sama_3445	0.19	+1.3
4,076,894	-		Sama_3445	0.19	+0.2
4,076,894	-		Sama_3445	0.19	-1.2
4,077,009	-		Sama_3445	0.37	+0.2
4,077,046	-		Sama_3445	0.43	+0.1
4,077,078	+		Sama_3445	0.48	+0.0
4,077,078	+		Sama_3445	0.48	-0.6
4,077,082	-		Sama_3445	0.48	-0.2
4,077,082	-		Sama_3445	0.48	+1.8
4,077,082	-		Sama_3445	0.48	+1.7
4,077,128	-		Sama_3445	0.56	+0.1
4,077,156	+		Sama_3445	0.60	-2.3
4,077,157	-		Sama_3445	0.60	-1.3
4,077,215	+		Sama_3445	0.69	-0.4
4,077,264	+		Sama_3445	0.77	-1.2
4,077,264	+		Sama_3445	0.77	-1.2
4,077,290	+		Sama_3445	0.81	+1.1
4,077,340	-		Sama_3445	0.89	-0.5
4,077,342	+		Sama_3445	0.89	+0.4
4,077,343	-		Sama_3445	0.89	+1.5
4,077,368	+				-2.0
4,077,368	+				-0.2
4,077,368	+				-1.6
4,077,369	-				-1.7
4,077,372	+				-1.1
4,077,372	+				+0.5
4,077,372	+				-0.7
4,077,372	+				-1.0
4,077,372	+				-2.3
4,077,372	+				-3.2
4,077,372	+				-0.5
4,077,373	-				+2.4
4,077,373	-				-2.3
4,077,373	-				+1.2
4,077,373	-				-3.0
4,077,373	-				-0.8
4,077,373	-				-0.0
4,077,373	-				+1.9
4,077,373	-				+0.3
4,077,373	-				-0.2
4,077,373	-				+0.5
4,077,373	-				+0.3
4,077,374	+				-2.2
4,077,374	+				-2.0
4,077,374	+				-1.0
4,077,374	+				+0.8
4,077,374	+				-0.6
4,077,374	+				-1.2
4,077,374	+				-0.4
4,077,374	+				+1.1
4,077,374	+				-0.7
4,077,374	+				-2.2
4,077,374	+				-0.2
4,077,374	+				-0.5
4,077,374	+				+2.0
4,077,374	+				+0.1
4,077,374	+				-2.6
4,077,374	+				-0.4
4,077,374	+				+1.0
4,077,374	+				+0.6
4,077,374	+				+1.3
4,077,374	+				-1.5
4,077,374	+				+0.5
4,077,374	+				-0.6
4,077,375	-				+0.1
4,077,375	-				-2.0
4,077,375	-				-1.1
4,077,375	-				+1.4
4,077,375	-				+2.9
4,077,375	-				-3.2
4,077,375	-				-0.0
4,077,375	-				-2.6
4,077,375	-				+0.2
4,077,375	-				-2.1
4,077,375	-				-0.2
4,077,375	-				-2.0
4,077,375	-				+0.5
4,077,375	-				-0.8
4,077,375	-				+1.0
4,077,375	-				+1.4
4,077,375	-				-0.6
4,077,375	-				-0.5
4,077,375	-				-1.9
4,077,375	-				+0.0
4,077,510	+		Sama_3446	0.29	+0.6
4,077,510	+		Sama_3446	0.29	-1.6
4,077,510	+		Sama_3446	0.29	+2.0
4,077,510	+		Sama_3446	0.29	-2.0
4,077,510	+		Sama_3446	0.29	+2.3
4,077,511	-		Sama_3446	0.29	-0.8
4,077,511	-		Sama_3446	0.29	+1.8
4,077,511	-		Sama_3446	0.29	+1.1
4,077,649	-		Sama_3446	0.68	-1.6
4,077,718	+		Sama_3446	0.88	-2.0
4,077,719	-		Sama_3446	0.88	+0.4
4,077,719	-		Sama_3446	0.88	-4.1
4,077,729	+				-0.5
4,077,729	+				+0.8
4,077,730	-				-2.3
4,077,730	-				-0.2
4,077,730	-				-2.4
4,077,730	-				+0.3
4,077,730	-				-2.4
4,077,745	+				-0.9
4,077,745	+				+2.6
4,077,745	+				-0.5
4,077,753	+				-1.6
4,077,753	+				+0.3
4,077,753	+				-0.4
4,077,753	+				+1.1
4,077,753	+				+0.7
4,077,753	+				+0.0
4,077,754	-				-0.3
4,077,754	-				+0.8
4,077,754	-				-0.9
4,077,754	-				+1.2
4,077,754	-				+0.9
4,077,754	-				-0.5
4,077,754	-				-1.6
4,077,754	-				+1.1
4,077,754	-				-0.3
4,077,754	-				-1.2
4,077,754	-				-1.4
4,077,754	-				-1.2
4,077,754	-				-1.8
4,077,754	-				-1.6
4,077,754	-				-0.9
4,077,754	-				-0.2
4,077,754	-				+0.7
4,077,754	-				+0.2
4,077,755	+				+0.9
4,077,755	+				-1.4
4,077,755	+				+1.1
4,077,755	+				+3.4
4,077,755	+				-2.5
4,077,755	+				-0.0
4,077,755	+				+0.8
4,077,755	+				+1.2
4,077,755	+				+1.1
4,077,755	+				+1.1
4,077,755	+				+2.5
4,077,755	+				-0.8
4,077,755	+				-0.3
4,077,755	+				-0.5
4,077,755	+				-0.7
4,077,755	+				-1.7
4,077,755	+				-2.4
4,077,755	+				+2.9
4,077,755	+				+0.1
4,077,755	+				-0.9
4,077,755	+				-0.5
4,077,755	+				-0.7
4,077,755	+				-1.2
4,077,756	-				-0.0
4,077,756	-				-2.2
4,077,756	-				-2.1
4,077,756	-				+0.9
4,077,756	-				-0.5
4,077,756	-				-2.3
4,077,756	-				+0.3
4,077,756	-				-0.7
4,077,756	-				-2.3
4,077,756	-				-1.3
4,077,756	-				+0.9
4,077,756	-				-0.8
4,077,756	-				+1.8
4,077,756	-				-0.8
4,077,756	-				+1.0
4,077,756	-				+0.3
4,077,756	-				-0.7
4,077,756	-				+0.2
4,077,756	-				+2.4
4,077,756	-				+0.8
4,077,756	-				+1.8
4,077,756	-				-1.7
4,077,756	-				+0.0
4,077,756	-				-2.1
4,077,756	-				-1.4
4,077,756	-				+0.3
4,077,756	-				+2.5
4,077,756	-				-0.5
4,077,756	-				+0.5
4,077,756	-				+1.7
4,077,785	+				-0.5
4,077,785	+				+0.8
4,077,785	+				-0.2
4,077,786	-				-1.2
4,077,786	-				+0.9
4,077,786	-				-1.0
4,077,786	-				+0.5
4,077,786	-				+1.1
4,077,786	-				+0.9
4,077,816	+				+0.3
4,077,890	-				+1.0
4,077,896	+				+0.1
4,077,896	+				-2.0
4,077,896	+				+1.0
4,077,896	+				+1.1
4,077,897	-				+0.5
4,077,933	+		Sama_3447	0.12	+0.8
4,077,933	+		Sama_3447	0.12	-1.8
4,077,933	+		Sama_3447	0.12	-0.8
4,077,933	+		Sama_3447	0.12	+0.3
4,077,934	-		Sama_3447	0.13	-0.8
4,078,057	+		Sama_3447	0.32	-0.9
4,078,086	+		Sama_3447	0.37	-0.0
4,078,087	-		Sama_3447	0.37	+2.4
4,078,087	-		Sama_3447	0.37	+2.2
4,078,096	-		Sama_3447	0.38	-1.2
4,078,140	-		Sama_3447	0.45	-1.5
4,078,209	+		Sama_3447	0.56	-0.4
4,078,209	+		Sama_3447	0.56	+0.9
4,078,209	+		Sama_3447	0.56	+0.4
4,078,209	+		Sama_3447	0.56	-1.9
4,078,210	-		Sama_3447	0.56	-1.9
4,078,210	-		Sama_3447	0.56	-1.2
4,078,210	-		Sama_3447	0.56	+1.0
4,078,210	-		Sama_3447	0.56	-0.7
4,078,210	-		Sama_3447	0.56	+1.3
4,078,210	-		Sama_3447	0.56	+1.1
4,078,210	-		Sama_3447	0.56	+0.0
4,078,232	-		Sama_3447	0.60	+1.4
4,078,331	+		Sama_3447	0.76	+1.1
4,078,331	+		Sama_3447	0.76	-1.0
4,078,332	-		Sama_3447	0.76	+1.0
4,078,332	-		Sama_3447	0.76	+1.2
4,078,332	-		Sama_3447	0.76	-0.2