Strain Fitness in Shewanella amazonensis SB2B around Sama_3440

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
4,071,078	+		Sama_3439	0.60	+0.5
4,071,078	+		Sama_3439	0.60	+1.9
4,071,078	+		Sama_3439	0.60	-0.4
4,071,078	+		Sama_3439	0.60	-0.4
4,071,078	+		Sama_3439	0.60	+1.1
4,071,078	+		Sama_3439	0.60	-1.6
4,071,079	-		Sama_3439	0.60	-1.7
4,071,079	-		Sama_3439	0.60	+0.2
4,071,081	+		Sama_3439	0.60	+1.1
4,071,081	+		Sama_3439	0.60	-1.7
4,071,082	-		Sama_3439	0.60	-0.4
4,071,082	-		Sama_3439	0.60	+0.3
4,071,082	-		Sama_3439	0.60	-0.4
4,071,082	-		Sama_3439	0.60	+0.3
4,071,209	+		Sama_3439	0.66	-1.8
4,071,228	-		Sama_3439	0.67	-1.9
4,071,287	-		Sama_3439	0.69	+0.0
4,071,296	-		Sama_3439	0.70	+1.8
4,071,359	+		Sama_3439	0.73	+0.8
4,071,359	+		Sama_3439	0.73	-1.2
4,071,359	+		Sama_3439	0.73	-2.1
4,071,360	-		Sama_3439	0.73	+0.8
4,071,388	+		Sama_3439	0.74	-0.3
4,071,388	+		Sama_3439	0.74	-2.4
4,071,389	-		Sama_3439	0.74	-0.6
4,071,389	-		Sama_3439	0.74	+1.3
4,071,389	-		Sama_3439	0.74	+1.1
4,071,389	-		Sama_3439	0.74	-0.2
4,071,444	+		Sama_3439	0.76	-1.2
4,071,444	+		Sama_3439	0.76	+1.5
4,071,444	+		Sama_3439	0.76	-1.0
4,071,444	+		Sama_3439	0.76	-1.5
4,071,444	+		Sama_3439	0.76	-0.9
4,071,444	+		Sama_3439	0.76	+0.2
4,071,444	+		Sama_3439	0.76	-1.4
4,071,444	+		Sama_3439	0.76	+2.8
4,071,445	-		Sama_3439	0.76	+0.8
4,071,445	-		Sama_3439	0.76	-0.6
4,071,445	-		Sama_3439	0.76	-1.2
4,071,445	-		Sama_3439	0.76	+0.4
4,071,445	-		Sama_3439	0.76	-1.9
4,071,445	-		Sama_3439	0.76	-2.6
4,071,445	-		Sama_3439	0.76	+0.1
4,071,445	-		Sama_3439	0.76	-0.7
4,071,487	-		Sama_3439	0.78	+3.9
4,071,491	+		Sama_3439	0.78	-0.9
4,071,491	+		Sama_3439	0.78	-1.0
4,071,491	+		Sama_3439	0.78	+1.3
4,071,492	-		Sama_3439	0.78	-1.6
4,071,492	-		Sama_3439	0.78	+0.7
4,071,585	+		Sama_3439	0.83	+1.6
4,071,585	+		Sama_3439	0.83	-0.4
4,071,586	-		Sama_3439	0.83	-2.5
4,071,586	-		Sama_3439	0.83	-0.2
4,071,586	-		Sama_3439	0.83	-0.8
4,071,586	-		Sama_3439	0.83	-0.9
4,071,607	+		Sama_3439	0.84	+0.7
4,071,724	+		Sama_3439	0.89	+0.1
4,071,724	+		Sama_3439	0.89	-1.0
4,071,725	-		Sama_3439	0.89	+0.1
4,071,725	-		Sama_3439	0.89	-2.0
4,071,793	-				-0.1
4,071,967	+				-0.1
4,071,968	+				-0.4
4,071,968	+				+1.0
4,071,969	-				-1.8
4,071,969	-				-0.2
4,071,976	-				-1.9
4,071,980	+				-1.1
4,071,980	+				-2.0
4,071,980	+				-0.8
4,071,980	+				-3.0
4,071,980	+				-1.9
4,071,981	-				-1.9
4,071,981	-				+1.5
4,071,981	-				-1.1
4,071,981	-				+0.3
4,071,981	-				-2.0
4,071,981	-				+0.1
4,071,990	+				+1.0
4,072,009	+				-2.3
4,072,009	+				-1.9
4,072,010	-				-0.7
4,072,051	+				+0.4
4,072,051	+				+1.6
4,072,051	+				+0.7
4,072,051	+				-0.4
4,072,051	+				-1.5
4,072,052	-				+0.6
4,072,052	-				-1.8
4,072,053	+				-0.9
4,072,053	+				+0.1
4,072,053	+				+0.7
4,072,054	-				-0.6
4,072,106	+				-2.8
4,072,106	+				-0.0
4,072,142	-		Sama_3440	0.14	+0.1
4,072,238	+		Sama_3440	0.34	+1.3
4,072,267	+		Sama_3440	0.40	-1.8
4,072,346	-		Sama_3440	0.57	-2.2
4,072,358	+		Sama_3440	0.59	-1.8
4,072,358	+		Sama_3440	0.59	-0.7
4,072,359	-		Sama_3440	0.59	-2.7
4,072,374	+		Sama_3440	0.62	+1.4
4,072,374	+		Sama_3440	0.62	+0.2
4,072,374	+		Sama_3440	0.62	+2.6
4,072,375	-		Sama_3440	0.63	-0.4
4,072,375	-		Sama_3440	0.63	-0.2
4,072,450	+		Sama_3440	0.78	-2.6
4,072,450	+		Sama_3440	0.78	+1.4
4,072,450	+		Sama_3440	0.78	+1.9
4,072,451	-		Sama_3440	0.79	-2.3
4,072,451	-		Sama_3440	0.79	+0.1
4,072,485	+		Sama_3440	0.86	+1.2
4,072,485	+		Sama_3440	0.86	-0.7
4,072,486	-		Sama_3440	0.86	+0.1
4,072,486	-		Sama_3440	0.86	-0.9
4,072,486	-		Sama_3440	0.86	-1.2
4,072,504	+		Sama_3440	0.90	-1.0
4,072,505	-				+1.0
4,072,511	+				+2.2
4,072,511	+				-0.5
4,072,512	-				-0.4
4,072,512	-				+0.6
4,072,550	+				+1.4
4,072,560	+				+0.0
4,072,560	+				-1.5
4,072,560	+				+0.2
4,072,561	-				-0.6
4,072,561	-				+1.6
4,072,564	+				-1.6
4,072,564	+				-0.9
4,072,564	+				-0.1
4,072,565	-				-0.1
4,072,565	-				-2.7
4,072,614	-		Sama_3441	0.11	-0.2
4,072,624	-		Sama_3441	0.13	+0.4
4,072,624	-		Sama_3441	0.13	-1.3
4,072,632	+		Sama_3441	0.14	+0.2
4,072,633	-		Sama_3441	0.15	-1.9
4,072,633	-		Sama_3441	0.15	-0.7
4,072,633	-		Sama_3441	0.15	-0.2
4,072,642	+		Sama_3441	0.16	+0.7
4,072,642	+		Sama_3441	0.16	-2.8
4,072,642	+		Sama_3441	0.16	-1.0
4,072,643	-		Sama_3441	0.17	+0.3
4,072,643	-		Sama_3441	0.17	+0.8
4,072,643	-		Sama_3441	0.17	+2.0
4,072,712	+		Sama_3441	0.30	-0.7
4,072,712	+		Sama_3441	0.30	-0.2
4,072,712	+		Sama_3441	0.30	+0.9
4,072,713	-		Sama_3441	0.31	-2.5
4,072,713	-		Sama_3441	0.31	-2.1
4,072,713	-		Sama_3441	0.31	+0.4
4,072,713	-		Sama_3441	0.31	-0.7
4,072,713	-		Sama_3441	0.31	-1.4
4,072,713	-		Sama_3441	0.31	-1.2
4,072,759	-		Sama_3441	0.40	-2.8
4,072,777	-		Sama_3441	0.43	-2.6
4,072,816	+		Sama_3441	0.51	-1.9
4,072,816	+		Sama_3441	0.51	+0.7
4,072,816	+		Sama_3441	0.51	+1.4
4,072,816	+		Sama_3441	0.51	-2.0
4,072,821	+		Sama_3441	0.52	+1.4
4,072,821	+		Sama_3441	0.52	+0.9
4,072,821	+		Sama_3441	0.52	-0.2
4,072,821	+		Sama_3441	0.52	-0.1
4,072,822	-		Sama_3441	0.52	-2.4
4,072,822	-		Sama_3441	0.52	-0.1
4,072,906	+		Sama_3441	0.69	-0.1
4,072,907	-		Sama_3441	0.69	+1.4
4,073,008	+		Sama_3441	0.89	+1.6
4,073,009	-		Sama_3441	0.89	+0.3
4,073,080	+				-3.0
4,073,080	+				+0.5
4,073,081	-				+1.5
4,073,154	-		Sama_3442	0.13	-2.9
4,073,200	+		Sama_3442	0.21	-0.4
4,073,200	+		Sama_3442	0.21	-2.3
4,073,200	+		Sama_3442	0.21	+0.8
4,073,200	+		Sama_3442	0.21	+0.9
4,073,200	+		Sama_3442	0.21	-2.5
4,073,201	-		Sama_3442	0.21	-1.8
4,073,201	-		Sama_3442	0.21	+0.6
4,073,201	-		Sama_3442	0.21	+0.8
4,073,201	-		Sama_3442	0.21	+1.5
4,073,301	+		Sama_3442	0.39	+0.7
4,073,301	+		Sama_3442	0.39	-0.9
4,073,301	+		Sama_3442	0.39	-1.0
4,073,301	+		Sama_3442	0.39	+0.6
4,073,301	+		Sama_3442	0.39	-2.6
4,073,301	+		Sama_3442	0.39	-0.4
4,073,301	+		Sama_3442	0.39	+0.9
4,073,301	+		Sama_3442	0.39	+0.6
4,073,301	+		Sama_3442	0.39	-1.9
4,073,301	+		Sama_3442	0.39	+0.3
4,073,301	+		Sama_3442	0.39	+0.0
4,073,301	+		Sama_3442	0.39	-0.8
4,073,302	-		Sama_3442	0.39	-2.8
4,073,302	-		Sama_3442	0.39	-1.8
4,073,302	-		Sama_3442	0.39	-2.3
4,073,302	-		Sama_3442	0.39	-0.2
4,073,302	-		Sama_3442	0.39	-0.4
4,073,302	-		Sama_3442	0.39	-1.0
4,073,302	-		Sama_3442	0.39	-0.4
4,073,302	-		Sama_3442	0.39	-0.6
4,073,302	-		Sama_3442	0.39	-2.6
4,073,302	-		Sama_3442	0.39	-0.7
4,073,302	-		Sama_3442	0.39	-1.8
4,073,333	-		Sama_3442	0.44	+1.5
4,073,333	-		Sama_3442	0.44	-0.7
4,073,393	+		Sama_3442	0.55	-0.1
4,073,393	+		Sama_3442	0.55	-0.4
4,073,393	+		Sama_3442	0.55	-1.4
4,073,394	-		Sama_3442	0.55	-2.0
4,073,394	-		Sama_3442	0.55	-1.8
4,073,429	-		Sama_3442	0.61	-1.4
4,073,429	-		Sama_3442	0.61	+1.9
4,073,436	+		Sama_3442	0.62	-0.7
4,073,436	+		Sama_3442	0.62	-2.3
4,073,494	+		Sama_3442	0.72	+0.1
4,073,494	+		Sama_3442	0.72	-1.9
4,073,494	+		Sama_3442	0.72	-0.8
4,073,494	+		Sama_3442	0.72	+2.1
4,073,494	+		Sama_3442	0.72	+0.1
4,073,494	+		Sama_3442	0.72	+1.5
4,073,494	+		Sama_3442	0.72	+2.3
4,073,494	+		Sama_3442	0.72	+0.4
4,073,494	+		Sama_3442	0.72	+0.2
4,073,495	-		Sama_3442	0.72	-0.3
4,073,495	-		Sama_3442	0.72	+0.1
4,073,495	-		Sama_3442	0.72	-0.3
4,073,495	-		Sama_3442	0.72	-1.7
4,073,520	+		Sama_3442	0.77	-2.4
4,073,520	+		Sama_3442	0.77	+0.8
4,073,520	+		Sama_3442	0.77	+0.3
4,073,521	-		Sama_3442	0.77	+2.5
4,073,521	-		Sama_3442	0.77	+2.5
4,073,541	+		Sama_3442	0.80	-1.4