Strain Fitness in Shewanella amazonensis SB2B around Sama_3416

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
4,043,786	+		Sama_3415	0.73	-0.5
4,043,786	+		Sama_3415	0.73	-0.7
4,043,786	+		Sama_3415	0.73	-0.2
4,043,786	+		Sama_3415	0.73	+2.4
4,043,786	+		Sama_3415	0.73	-1.7
4,043,787	-		Sama_3415	0.73	-1.9
4,043,787	-		Sama_3415	0.73	-1.4
4,043,787	-		Sama_3415	0.73	-1.7
4,043,788	+		Sama_3415	0.73	-0.7
4,043,788	+		Sama_3415	0.73	-2.4
4,043,788	+		Sama_3415	0.73	-1.6
4,043,788	+		Sama_3415	0.73	+0.6
4,043,789	-		Sama_3415	0.73	-1.0
4,043,789	-		Sama_3415	0.73	-0.3
4,043,845	+		Sama_3415	0.76	-1.6
4,043,846	-		Sama_3415	0.76	+0.2
4,043,846	-		Sama_3415	0.76	-1.0
4,043,846	-		Sama_3415	0.76	-0.0
4,043,846	-		Sama_3415	0.76	+0.7
4,043,854	+		Sama_3415	0.77	-0.3
4,043,854	+		Sama_3415	0.77	+1.3
4,043,854	+		Sama_3415	0.77	+1.5
4,043,854	+		Sama_3415	0.77	-1.2
4,043,854	+		Sama_3415	0.77	-1.9
4,043,855	-		Sama_3415	0.77	-0.2
4,043,855	-		Sama_3415	0.77	+0.1
4,043,855	-		Sama_3415	0.77	-2.9
4,043,855	-		Sama_3415	0.77	-1.8
4,043,855	-		Sama_3415	0.77	-1.9
4,043,855	-		Sama_3415	0.77	+3.5
4,043,855	-		Sama_3415	0.77	+0.2
4,043,855	-		Sama_3415	0.77	-1.7
4,043,855	-		Sama_3415	0.77	-1.1
4,043,855	-		Sama_3415	0.77	+0.3
4,043,857	+		Sama_3415	0.77	+0.3
4,043,858	-		Sama_3415	0.77	-1.5
4,043,858	-		Sama_3415	0.77	-0.9
4,043,907	+		Sama_3415	0.80	-0.3
4,043,907	+		Sama_3415	0.80	+0.1
4,043,908	-		Sama_3415	0.80	-0.7
4,043,992	+		Sama_3415	0.84	-2.2
4,043,992	+		Sama_3415	0.84	+0.5
4,043,992	+		Sama_3415	0.84	+0.4
4,043,992	+		Sama_3415	0.84	+0.3
4,043,993	-		Sama_3415	0.84	-3.4
4,043,993	-		Sama_3415	0.84	-0.5
4,043,993	-		Sama_3415	0.84	-2.2
4,043,993	-		Sama_3415	0.84	-2.6
4,043,993	-		Sama_3415	0.84	-0.2
4,044,006	+		Sama_3415	0.85	-2.0
4,044,006	+		Sama_3415	0.85	-0.7
4,044,006	+		Sama_3415	0.85	-2.2
4,044,007	-		Sama_3415	0.85	-0.9
4,044,007	-		Sama_3415	0.85	+0.9
4,044,013	+		Sama_3415	0.85	-0.2
4,044,013	+		Sama_3415	0.85	-2.3
4,044,013	+		Sama_3415	0.85	-1.3
4,044,013	+		Sama_3415	0.85	-0.7
4,044,014	-		Sama_3415	0.86	-2.4
4,044,014	-		Sama_3415	0.86	-0.5
4,044,014	-		Sama_3415	0.86	-1.8
4,044,059	-		Sama_3415	0.88	+1.6
4,044,059	-		Sama_3415	0.88	-1.0
4,044,059	-		Sama_3415	0.88	-1.0
4,044,059	-		Sama_3415	0.88	-0.9
4,044,066	+		Sama_3415	0.88	-2.0
4,044,066	+		Sama_3415	0.88	+0.2
4,044,066	+		Sama_3415	0.88	+1.7
4,044,067	-		Sama_3415	0.88	-1.2
4,044,067	-		Sama_3415	0.88	+1.0
4,044,067	-		Sama_3415	0.88	+1.2
4,044,067	-		Sama_3415	0.88	-2.9
4,044,067	-		Sama_3415	0.88	+1.6
4,044,067	-		Sama_3415	0.88	+2.0
4,044,069	+		Sama_3415	0.89	-1.4
4,044,069	+		Sama_3415	0.89	+0.5
4,044,069	+		Sama_3415	0.89	-0.5
4,044,069	+		Sama_3415	0.89	+0.6
4,044,069	+		Sama_3415	0.89	+0.2
4,044,069	+		Sama_3415	0.89	-2.2
4,044,070	-		Sama_3415	0.89	-2.0
4,044,070	-		Sama_3415	0.89	-1.3
4,044,070	-		Sama_3415	0.89	-0.5
4,044,070	-		Sama_3415	0.89	-2.0
4,044,074	+		Sama_3415	0.89	+0.8
4,044,074	+		Sama_3415	0.89	+0.4
4,044,074	+		Sama_3415	0.89	-0.5
4,044,225	+				-2.0
4,044,225	+				-1.3
4,044,226	-				-1.5
4,044,226	-				-0.7
4,044,226	-				-1.7
4,044,226	-				+2.1
4,044,226	-				-0.7
4,044,226	-				-2.0
4,044,246	+				-1.3
4,044,247	-				+0.1
4,044,247	-				-0.7
4,044,259	-				-1.5
4,044,288	+				-2.4
4,044,288	+				-0.3
4,044,288	+				+0.8
4,044,288	+				-0.6
4,044,288	+				-0.5
4,044,289	-				-0.5
4,044,289	-				-0.6
4,044,289	-				-1.4
4,044,289	-				+0.1
4,044,289	-				-0.9
4,044,317	+				-0.9
4,044,317	+				-0.8
4,044,317	+				-1.5
4,044,318	-				+3.6
4,044,318	-				+1.7
4,044,318	-				-1.1
4,044,318	-				-1.0
4,044,318	-				-0.7
4,044,318	-				+0.2
4,044,318	-				-0.8
4,044,319	+				-0.0
4,044,319	+				+0.9
4,044,320	-				+1.1
4,044,320	-				-0.6
4,044,320	-				-0.6
4,044,368	+				-0.9
4,044,387	-				+0.4
4,044,423	+				-1.5
4,044,423	+				+1.1
4,044,423	+				-1.5
4,044,423	+				+0.8
4,044,423	+				+1.3
4,044,424	-				+0.6
4,044,424	-				+0.6
4,044,424	-				+1.0
4,044,424	-				-2.1
4,044,428	+				-1.2
4,044,428	+				+0.4
4,044,429	-				-1.2
4,044,429	-				+1.1
4,044,429	-				-1.1
4,044,452	+				-0.2
4,044,499	+				+0.7
4,044,499	+				+0.1
4,044,500	-				-2.3
4,044,601	+				+0.1
4,044,601	+				-1.7
4,044,690	+				-1.0
4,044,690	+				-0.6
4,044,690	+				-1.0
4,044,690	+				-1.8
4,044,690	+				-0.5
4,044,691	-				-0.7
4,044,696	+				-3.6
4,044,696	+				+0.1
4,044,696	+				-0.2
4,044,696	+				+0.6
4,044,696	+				-1.5
4,044,697	-				-1.7
4,044,699	+				-0.5
4,044,699	+				+1.8
4,044,714	+				+0.5
4,045,022	+	glnA	Sama_3416	0.20	-0.7
4,045,502	+	glnA	Sama_3416	0.54	+3.1
4,046,142	+				+2.4
4,046,142	+				-1.6
4,046,143	-				+0.8
4,046,143	-				-1.6
4,046,143	-				-1.7
4,046,143	-				+0.2
4,046,143	-				-1.5
4,046,166	+				-0.8
4,046,166	+				+0.4
4,046,167	-				+0.1
4,046,183	+				+0.9
4,046,245	+				-1.0
4,046,245	+				-0.6
4,046,245	+				-1.5
4,046,246	-				+0.1
4,046,263	+				+0.4
4,046,263	+				-0.9
4,046,263	+				-0.8
4,046,263	+				-1.4
4,046,263	+				-2.0
4,046,263	+				-0.2
4,046,263	+				-0.2
4,046,263	+				-2.7
4,046,263	+				-3.5
4,046,263	+				-0.3
4,046,263	+				-2.0
4,046,263	+				-1.3
4,046,263	+				-2.4
4,046,263	+				+1.2
4,046,263	+				+0.1
4,046,263	+				-1.1
4,046,263	+				-0.6
4,046,263	+				+0.8
4,046,263	+				+0.5
4,046,263	+				-0.5
4,046,263	+				+0.1
4,046,264	-				+0.2
4,046,264	-				+3.0
4,046,264	-				+1.2
4,046,264	-				-1.1
4,046,264	-				+0.9
4,046,264	-				+0.4
4,046,264	-				+2.4
4,046,264	-				+1.7
4,046,264	-				-2.1
4,046,264	-				-0.9
4,046,264	-				-1.3
4,046,291	+				+1.3
4,046,292	-				-0.3
4,046,292	-				+1.5
4,046,305	+				-0.9
4,046,306	-				+2.1
4,046,306	-				+1.1
4,046,306	-				-0.5
4,046,306	-				+1.6
4,046,316	+				+0.9
4,046,317	-				-0.2
4,046,326	+				+0.9
4,046,326	+				+0.9
4,046,326	+				+1.1
4,046,326	+				-0.7
4,046,326	+				-0.9
4,046,326	+				-2.0
4,046,326	+				-0.0
4,046,326	+				-3.3
4,046,327	-				-0.5
4,046,327	-				-0.7
4,046,327	-				+1.0
4,046,327	-				-0.5
4,046,327	-				-1.0
4,046,327	-				+0.1
4,046,345	+				+0.5
4,046,345	+				-1.0
4,046,345	+				-0.5
4,046,345	+				+1.6
4,046,345	+				-1.5
4,046,345	+				-0.2
4,046,346	-				-0.9
4,046,346	-				-2.0
4,046,346	-				-0.6
4,046,346	-				+3.1
4,046,346	-				-2.8
4,046,346	-				+0.1
4,046,346	-				+1.2
4,046,346	-				-1.8
4,046,359	+				-1.0
4,046,359	+				-0.9
4,046,360	-				-2.6
4,046,360	-				+2.6
4,046,360	-				+0.4
4,046,367	+				+1.8
4,046,395	-				+1.8
4,046,495	+		Sama_3417	0.18	-3.1
4,046,513	+		Sama_3417	0.20	-1.8
4,046,514	-		Sama_3417	0.20	-1.7
4,046,603	+		Sama_3417	0.28	-0.3
4,046,603	+		Sama_3417	0.28	-1.0
4,046,603	+		Sama_3417	0.28	+0.4
4,046,603	+		Sama_3417	0.28	-1.7
4,046,604	-		Sama_3417	0.28	-0.5
4,046,604	-		Sama_3417	0.28	-1.3
4,046,604	-		Sama_3417	0.28	-0.5
4,046,604	-		Sama_3417	0.28	-3.0
4,046,604	-		Sama_3417	0.28	+1.1
4,046,604	-		Sama_3417	0.28	+1.4
4,046,604	-		Sama_3417	0.28	-0.5
4,046,604	-		Sama_3417	0.28	-2.9
4,046,654	+		Sama_3417	0.33	-0.5
4,046,671	-		Sama_3417	0.34	+1.4
4,046,756	+		Sama_3417	0.42	+0.1
4,046,756	+		Sama_3417	0.42	+0.3
4,046,757	-		Sama_3417	0.42	-1.5
4,046,757	-		Sama_3417	0.42	-0.1
4,046,757	-		Sama_3417	0.42	-0.3
4,046,833	+		Sama_3417	0.49	-0.5
4,046,833	+		Sama_3417	0.49	-0.9
4,046,942	+		Sama_3417	0.58	-1.6
4,046,942	+		Sama_3417	0.58	+1.4
4,046,942	+		Sama_3417	0.58	-0.7
4,046,943	-		Sama_3417	0.59	-0.5
4,046,943	-		Sama_3417	0.59	+1.4
4,046,943	-		Sama_3417	0.59	-1.5
4,046,956	-		Sama_3417	0.60	-1.4
4,046,956	-		Sama_3417	0.60	-1.9
4,046,984	+		Sama_3417	0.62	+1.7
4,046,984	+		Sama_3417	0.62	-0.7
4,046,985	-		Sama_3417	0.62	-1.0
4,046,985	-		Sama_3417	0.62	+1.0
4,046,985	-		Sama_3417	0.62	-1.7
4,046,985	-		Sama_3417	0.62	-0.1
4,046,985	-		Sama_3417	0.62	-0.2
4,046,985	-		Sama_3417	0.62	-1.2
4,047,009	+		Sama_3417	0.64	+0.1
4,047,009	+		Sama_3417	0.64	+0.7
4,047,009	+		Sama_3417	0.64	-2.0
4,047,009	+		Sama_3417	0.64	-0.7
4,047,010	-		Sama_3417	0.65	+0.4
4,047,010	-		Sama_3417	0.65	+2.0
4,047,010	-		Sama_3417	0.65	+0.5
4,047,012	+		Sama_3417	0.65	-2.9
4,047,126	+		Sama_3417	0.75	+0.5
4,047,127	-		Sama_3417	0.75	+0.8
4,047,142	+		Sama_3417	0.76	-0.0
4,047,143	-		Sama_3417	0.76	-2.1