Experiment: Motility assay, center cut sample 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_3377 and Sama_3378 overlap by 8 nucleotides Sama_3378 and Sama_3379 overlap by 4 nucleotides Sama_3379 and Sama_3380 are separated by 4 nucleotides Sama_3380 and Sama_3381 overlap by 1 nucleotides Sama_3381 and Sama_3382 are separated by 3 nucleotides
Sama_3377: Sama_3377 - hypothetical protein (RefSeq), at 4,006,194 to 4,006,877
_3377
Sama_3378: Sama_3378 - acyltransferase family protein (RefSeq), at 4,006,870 to 4,007,697
_3378
Sama_3379: Sama_3379 - acyl carrier protein, putative (RefSeq), at 4,007,694 to 4,007,954
_3379
Sama_3380: Sama_3380 - acyl carrier protein (RefSeq), at 4,007,959 to 4,008,207
_3380
Sama_3381: Sama_3381 - hypothetical protein (RefSeq), at 4,008,207 to 4,008,755
_3381
Sama_3382: Sama_3382 - hypothetical protein (RefSeq), at 4,008,759 to 4,010,138
_3382
Position (kb)
4007
4008 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4006.791 kb on + strand, within Sama_3377 at 4006.791 kb on + strand, within Sama_3377 at 4006.791 kb on + strand, within Sama_3377 at 4006.791 kb on + strand, within Sama_3377 at 4006.792 kb on - strand, within Sama_3377 at 4006.792 kb on - strand, within Sama_3377 at 4006.936 kb on + strand at 4006.936 kb on + strand at 4006.936 kb on + strand at 4006.936 kb on + strand at 4006.936 kb on + strand at 4006.937 kb on - strand at 4006.937 kb on - strand at 4006.937 kb on - strand at 4006.937 kb on - strand at 4006.937 kb on - strand at 4006.937 kb on - strand at 4006.937 kb on - strand at 4006.937 kb on - strand at 4006.969 kb on + strand, within Sama_3378 at 4006.969 kb on + strand, within Sama_3378 at 4006.969 kb on + strand, within Sama_3378 at 4006.969 kb on + strand, within Sama_3378 at 4006.969 kb on + strand, within Sama_3378 at 4006.969 kb on + strand, within Sama_3378 at 4006.969 kb on + strand, within Sama_3378 at 4006.969 kb on + strand, within Sama_3378 at 4006.969 kb on + strand, within Sama_3378 at 4006.969 kb on + strand, within Sama_3378 at 4006.969 kb on + strand, within Sama_3378 at 4006.969 kb on + strand, within Sama_3378 at 4006.969 kb on + strand, within Sama_3378 at 4006.970 kb on - strand, within Sama_3378 at 4006.970 kb on - strand, within Sama_3378 at 4006.970 kb on - strand, within Sama_3378 at 4006.970 kb on - strand, within Sama_3378 at 4006.970 kb on - strand, within Sama_3378 at 4006.970 kb on - strand, within Sama_3378 at 4006.970 kb on - strand, within Sama_3378 at 4006.970 kb on - strand, within Sama_3378 at 4006.997 kb on + strand, within Sama_3378 at 4006.997 kb on + strand, within Sama_3378 at 4007.010 kb on + strand, within Sama_3378 at 4007.011 kb on - strand, within Sama_3378 at 4007.011 kb on - strand, within Sama_3378 at 4007.029 kb on + strand, within Sama_3378 at 4007.029 kb on + strand, within Sama_3378 at 4007.029 kb on + strand, within Sama_3378 at 4007.029 kb on + strand, within Sama_3378 at 4007.030 kb on - strand, within Sama_3378 at 4007.225 kb on + strand, within Sama_3378 at 4007.226 kb on - strand, within Sama_3378 at 4007.226 kb on - strand, within Sama_3378 at 4007.226 kb on - strand, within Sama_3378 at 4007.226 kb on - strand, within Sama_3378 at 4007.250 kb on + strand, within Sama_3378 at 4007.251 kb on - strand, within Sama_3378 at 4007.256 kb on - strand, within Sama_3378 at 4007.256 kb on - strand, within Sama_3378 at 4007.256 kb on - strand, within Sama_3378 at 4007.283 kb on + strand, within Sama_3378 at 4007.283 kb on + strand, within Sama_3378 at 4007.283 kb on + strand, within Sama_3378 at 4007.283 kb on + strand, within Sama_3378 at 4007.284 kb on - strand, within Sama_3378 at 4007.311 kb on + strand, within Sama_3378 at 4007.311 kb on + strand, within Sama_3378 at 4007.311 kb on + strand, within Sama_3378 at 4007.311 kb on + strand, within Sama_3378 at 4007.311 kb on + strand, within Sama_3378 at 4007.311 kb on + strand, within Sama_3378 at 4007.312 kb on - strand, within Sama_3378 at 4007.312 kb on - strand, within Sama_3378 at 4007.312 kb on - strand, within Sama_3378 at 4007.312 kb on - strand, within Sama_3378 at 4007.312 kb on - strand, within Sama_3378 at 4007.312 kb on - strand, within Sama_3378 at 4007.312 kb on - strand, within Sama_3378 at 4007.313 kb on + strand, within Sama_3378 at 4007.313 kb on + strand, within Sama_3378 at 4007.313 kb on + strand, within Sama_3378 at 4007.314 kb on - strand, within Sama_3378 at 4007.314 kb on - strand, within Sama_3378 at 4007.360 kb on + strand, within Sama_3378 at 4007.360 kb on + strand, within Sama_3378 at 4007.360 kb on + strand, within Sama_3378 at 4007.361 kb on - strand, within Sama_3378 at 4007.374 kb on - strand, within Sama_3378 at 4007.385 kb on + strand, within Sama_3378 at 4007.385 kb on + strand, within Sama_3378 at 4007.385 kb on + strand, within Sama_3378 at 4007.385 kb on + strand, within Sama_3378 at 4007.386 kb on - strand, within Sama_3378 at 4007.386 kb on - strand, within Sama_3378 at 4007.386 kb on - strand, within Sama_3378 at 4007.426 kb on + strand, within Sama_3378 at 4007.426 kb on + strand, within Sama_3378 at 4007.426 kb on + strand, within Sama_3378 at 4007.426 kb on + strand, within Sama_3378 at 4007.426 kb on + strand, within Sama_3378 at 4007.480 kb on + strand, within Sama_3378 at 4007.480 kb on + strand, within Sama_3378 at 4007.480 kb on + strand, within Sama_3378 at 4007.480 kb on + strand, within Sama_3378 at 4007.480 kb on + strand, within Sama_3378 at 4007.480 kb on + strand, within Sama_3378 at 4007.480 kb on + strand, within Sama_3378 at 4007.480 kb on + strand, within Sama_3378 at 4007.480 kb on + strand, within Sama_3378 at 4007.481 kb on - strand, within Sama_3378 at 4007.481 kb on - strand, within Sama_3378 at 4007.481 kb on - strand, within Sama_3378 at 4007.481 kb on - strand, within Sama_3378 at 4007.481 kb on - strand, within Sama_3378 at 4007.481 kb on - strand, within Sama_3378 at 4007.481 kb on - strand, within Sama_3378 at 4007.571 kb on - strand, within Sama_3378 at 4007.602 kb on + strand, within Sama_3378 at 4007.602 kb on + strand, within Sama_3378 at 4007.602 kb on + strand, within Sama_3378 at 4007.603 kb on - strand, within Sama_3378 at 4007.603 kb on - strand, within Sama_3378 at 4007.668 kb on + strand at 4007.670 kb on + strand at 4007.687 kb on + strand at 4007.701 kb on + strand at 4007.701 kb on + strand at 4007.701 kb on + strand at 4007.701 kb on + strand at 4007.702 kb on - strand at 4007.702 kb on - strand at 4007.702 kb on - strand at 4007.702 kb on - strand at 4007.767 kb on + strand, within Sama_3379 at 4007.768 kb on - strand, within Sama_3379 at 4007.840 kb on + strand, within Sama_3379 at 4007.843 kb on + strand, within Sama_3379 at 4007.844 kb on - strand, within Sama_3379 at 4007.844 kb on - strand, within Sama_3379 at 4007.860 kb on + strand, within Sama_3379 at 4007.860 kb on + strand, within Sama_3379 at 4007.861 kb on - strand, within Sama_3379 at 4007.861 kb on - strand, within Sama_3379 at 4007.861 kb on - strand, within Sama_3379 at 4007.902 kb on - strand, within Sama_3379 at 4007.928 kb on - strand, within Sama_3379 at 4007.952 kb on + strand at 4007.952 kb on + strand at 4007.952 kb on + strand at 4007.953 kb on - strand at 4007.953 kb on - strand at 4007.953 kb on - strand at 4007.958 kb on + strand at 4007.958 kb on + strand at 4007.958 kb on + strand at 4007.958 kb on + strand at 4008.055 kb on + strand, within Sama_3380 at 4008.055 kb on + strand, within Sama_3380 at 4008.151 kb on + strand, within Sama_3380 at 4008.155 kb on + strand, within Sama_3380 at 4008.155 kb on + strand, within Sama_3380 at 4008.155 kb on + strand, within Sama_3380 at 4008.215 kb on + strand at 4008.215 kb on + strand at 4008.216 kb on - strand at 4008.216 kb on - strand at 4008.216 kb on - strand at 4008.224 kb on - strand at 4008.249 kb on + strand at 4008.279 kb on + strand, within Sama_3381 at 4008.279 kb on + strand, within Sama_3381 at 4008.280 kb on - strand, within Sama_3381 at 4008.293 kb on + strand, within Sama_3381 at 4008.340 kb on + strand, within Sama_3381 at 4008.341 kb on - strand, within Sama_3381 at 4008.341 kb on - strand, within Sama_3381 at 4008.395 kb on + strand, within Sama_3381 at 4008.438 kb on + strand, within Sama_3381 at 4008.439 kb on - strand, within Sama_3381 at 4008.559 kb on + strand, within Sama_3381 at 4008.559 kb on + strand, within Sama_3381 at 4008.559 kb on + strand, within Sama_3381 at 4008.559 kb on + strand, within Sama_3381 at 4008.560 kb on - strand, within Sama_3381 at 4008.560 kb on - strand, within Sama_3381 at 4008.560 kb on - strand, within Sama_3381 at 4008.565 kb on - strand, within Sama_3381 at 4008.608 kb on - strand, within Sama_3381 at 4008.628 kb on - strand, within Sama_3381 at 4008.628 kb on - strand, within Sama_3381 at 4008.667 kb on - strand, within Sama_3381 at 4008.667 kb on - strand, within Sama_3381 at 4008.667 kb on - strand, within Sama_3381 at 4008.667 kb on - strand, within Sama_3381 at 4008.667 kb on - strand, within Sama_3381 at 4008.667 kb on - strand, within Sama_3381 at 4008.667 kb on - strand, within Sama_3381 at 4008.667 kb on - strand, within Sama_3381 at 4008.685 kb on - strand, within Sama_3381 at 4008.685 kb on - strand, within Sama_3381 at 4008.693 kb on - strand, within Sama_3381 at 4008.723 kb on + strand at 4008.734 kb on + strand at 4008.789 kb on + strand at 4008.789 kb on + strand at 4008.789 kb on + strand at 4008.790 kb on - strand at 4008.790 kb on - strand at 4008.829 kb on + strand at 4008.829 kb on + strand at 4008.830 kb on - strand at 4008.869 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility assay, center cut sample 1 remove 4,006,791 + Sama_3377 0.87 -0.4 4,006,791 + Sama_3377 0.87 +1.7 4,006,791 + Sama_3377 0.87 +0.5 4,006,791 + Sama_3377 0.87 -0.9 4,006,792 - Sama_3377 0.87 -0.4 4,006,792 - Sama_3377 0.87 +0.4 4,006,936 + -0.2 4,006,936 + +1.6 4,006,936 + +0.4 4,006,936 + -0.5 4,006,936 + +0.9 4,006,937 - +0.3 4,006,937 - -0.6 4,006,937 - -1.6 4,006,937 - -1.2 4,006,937 - +0.4 4,006,937 - +0.6 4,006,937 - -1.6 4,006,937 - +0.2 4,006,969 + Sama_3378 0.12 +1.5 4,006,969 + Sama_3378 0.12 +0.3 4,006,969 + Sama_3378 0.12 +0.3 4,006,969 + Sama_3378 0.12 +1.7 4,006,969 + Sama_3378 0.12 -0.2 4,006,969 + Sama_3378 0.12 +1.1 4,006,969 + Sama_3378 0.12 +0.4 4,006,969 + Sama_3378 0.12 -1.6 4,006,969 + Sama_3378 0.12 -1.4 4,006,969 + Sama_3378 0.12 -2.0 4,006,969 + Sama_3378 0.12 +0.2 4,006,969 + Sama_3378 0.12 -0.8 4,006,969 + Sama_3378 0.12 +0.6 4,006,970 - Sama_3378 0.12 -1.4 4,006,970 - Sama_3378 0.12 -0.9 4,006,970 - Sama_3378 0.12 +1.4 4,006,970 - Sama_3378 0.12 +0.1 4,006,970 - Sama_3378 0.12 -2.1 4,006,970 - Sama_3378 0.12 +0.6 4,006,970 - Sama_3378 0.12 -1.7 4,006,970 - Sama_3378 0.12 -0.1 4,006,997 + Sama_3378 0.15 +0.4 4,006,997 + Sama_3378 0.15 -0.3 4,007,010 + Sama_3378 0.17 -1.6 4,007,011 - Sama_3378 0.17 -1.0 4,007,011 - Sama_3378 0.17 +1.3 4,007,029 + Sama_3378 0.19 -2.2 4,007,029 + Sama_3378 0.19 +1.4 4,007,029 + Sama_3378 0.19 -0.8 4,007,029 + Sama_3378 0.19 -0.8 4,007,030 - Sama_3378 0.19 -2.0 4,007,225 + Sama_3378 0.43 -0.1 4,007,226 - Sama_3378 0.43 +0.2 4,007,226 - Sama_3378 0.43 -2.6 4,007,226 - Sama_3378 0.43 -0.7 4,007,226 - Sama_3378 0.43 -0.4 4,007,250 + Sama_3378 0.46 -0.4 4,007,251 - Sama_3378 0.46 -2.2 4,007,256 - Sama_3378 0.47 +0.1 4,007,256 - Sama_3378 0.47 +1.3 4,007,256 - Sama_3378 0.47 -1.4 4,007,283 + Sama_3378 0.50 -1.3 4,007,283 + Sama_3378 0.50 -0.7 4,007,283 + Sama_3378 0.50 +0.4 4,007,283 + Sama_3378 0.50 +0.3 4,007,284 - Sama_3378 0.50 -0.2 4,007,311 + Sama_3378 0.53 -1.2 4,007,311 + Sama_3378 0.53 -0.6 4,007,311 + Sama_3378 0.53 -0.9 4,007,311 + Sama_3378 0.53 -0.9 4,007,311 + Sama_3378 0.53 -1.2 4,007,311 + Sama_3378 0.53 +1.3 4,007,312 - Sama_3378 0.53 -0.2 4,007,312 - Sama_3378 0.53 -1.0 4,007,312 - Sama_3378 0.53 +2.1 4,007,312 - Sama_3378 0.53 -0.6 4,007,312 - Sama_3378 0.53 -0.7 4,007,312 - Sama_3378 0.53 +0.6 4,007,312 - Sama_3378 0.53 +0.6 4,007,313 + Sama_3378 0.54 -0.6 4,007,313 + Sama_3378 0.54 -1.2 4,007,313 + Sama_3378 0.54 -1.7 4,007,314 - Sama_3378 0.54 +2.0 4,007,314 - Sama_3378 0.54 +2.6 4,007,360 + Sama_3378 0.59 -0.8 4,007,360 + Sama_3378 0.59 -0.6 4,007,360 + Sama_3378 0.59 +0.9 4,007,361 - Sama_3378 0.59 -1.4 4,007,374 - Sama_3378 0.61 -1.7 4,007,385 + Sama_3378 0.62 -0.7 4,007,385 + Sama_3378 0.62 +0.1 4,007,385 + Sama_3378 0.62 -0.9 4,007,385 + Sama_3378 0.62 -2.7 4,007,386 - Sama_3378 0.62 -2.6 4,007,386 - Sama_3378 0.62 -1.6 4,007,386 - Sama_3378 0.62 +1.1 4,007,426 + Sama_3378 0.67 +2.3 4,007,426 + Sama_3378 0.67 +1.2 4,007,426 + Sama_3378 0.67 +1.1 4,007,426 + Sama_3378 0.67 -0.6 4,007,426 + Sama_3378 0.67 -1.3 4,007,480 + Sama_3378 0.74 +1.4 4,007,480 + Sama_3378 0.74 +0.8 4,007,480 + Sama_3378 0.74 +0.7 4,007,480 + Sama_3378 0.74 -0.4 4,007,480 + Sama_3378 0.74 -0.9 4,007,480 + Sama_3378 0.74 -1.3 4,007,480 + Sama_3378 0.74 +0.9 4,007,480 + Sama_3378 0.74 +3.8 4,007,480 + Sama_3378 0.74 -2.6 4,007,481 - Sama_3378 0.74 -0.8 4,007,481 - Sama_3378 0.74 +1.4 4,007,481 - Sama_3378 0.74 -0.8 4,007,481 - Sama_3378 0.74 -2.2 4,007,481 - Sama_3378 0.74 -1.8 4,007,481 - Sama_3378 0.74 +0.1 4,007,481 - Sama_3378 0.74 +0.7 4,007,571 - Sama_3378 0.85 -0.2 4,007,602 + Sama_3378 0.88 -0.3 4,007,602 + Sama_3378 0.88 -1.9 4,007,602 + Sama_3378 0.88 -0.3 4,007,603 - Sama_3378 0.89 +0.8 4,007,603 - Sama_3378 0.89 -2.3 4,007,668 + +1.7 4,007,670 + -0.3 4,007,687 + +0.6 4,007,701 + +0.1 4,007,701 + -2.0 4,007,701 + +1.3 4,007,701 + -1.9 4,007,702 - -1.0 4,007,702 - -0.7 4,007,702 - -0.8 4,007,702 - +0.1 4,007,767 + Sama_3379 0.28 -1.6 4,007,768 - Sama_3379 0.28 +0.4 4,007,840 + Sama_3379 0.56 +0.9 4,007,843 + Sama_3379 0.57 -1.4 4,007,844 - Sama_3379 0.57 +3.1 4,007,844 - Sama_3379 0.57 -0.2 4,007,860 + Sama_3379 0.64 +1.3 4,007,860 + Sama_3379 0.64 -1.8 4,007,861 - Sama_3379 0.64 +1.7 4,007,861 - Sama_3379 0.64 -1.9 4,007,861 - Sama_3379 0.64 -1.4 4,007,902 - Sama_3379 0.80 +1.7 4,007,928 - Sama_3379 0.90 -0.3 4,007,952 + +1.7 4,007,952 + +0.6 4,007,952 + +2.9 4,007,953 - -2.2 4,007,953 - -0.8 4,007,953 - -0.7 4,007,958 + -0.4 4,007,958 + +0.7 4,007,958 + -1.2 4,007,958 + -0.7 4,008,055 + Sama_3380 0.39 +0.9 4,008,055 + Sama_3380 0.39 +0.1 4,008,151 + Sama_3380 0.77 -1.4 4,008,155 + Sama_3380 0.79 +0.6 4,008,155 + Sama_3380 0.79 +0.7 4,008,155 + Sama_3380 0.79 -1.3 4,008,215 + +0.1 4,008,215 + +0.5 4,008,216 - -2.6 4,008,216 - -0.1 4,008,216 - -1.7 4,008,224 - -0.4 4,008,249 + -2.8 4,008,279 + Sama_3381 0.13 -2.3 4,008,279 + Sama_3381 0.13 +0.1 4,008,280 - Sama_3381 0.13 +0.1 4,008,293 + Sama_3381 0.16 -1.8 4,008,340 + Sama_3381 0.24 +1.1 4,008,341 - Sama_3381 0.24 -0.3 4,008,341 - Sama_3381 0.24 -0.7 4,008,395 + Sama_3381 0.34 -0.9 4,008,438 + Sama_3381 0.42 -0.2 4,008,439 - Sama_3381 0.42 -1.3 4,008,559 + Sama_3381 0.64 +2.9 4,008,559 + Sama_3381 0.64 -0.9 4,008,559 + Sama_3381 0.64 -0.2 4,008,559 + Sama_3381 0.64 -0.2 4,008,560 - Sama_3381 0.64 -3.3 4,008,560 - Sama_3381 0.64 -1.4 4,008,560 - Sama_3381 0.64 +2.1 4,008,565 - Sama_3381 0.65 +0.4 4,008,608 - Sama_3381 0.73 -1.0 4,008,628 - Sama_3381 0.77 +0.2 4,008,628 - Sama_3381 0.77 +1.5 4,008,667 - Sama_3381 0.84 -0.7 4,008,667 - Sama_3381 0.84 +1.5 4,008,667 - Sama_3381 0.84 +1.1 4,008,667 - Sama_3381 0.84 -1.2 4,008,667 - Sama_3381 0.84 -2.1 4,008,667 - Sama_3381 0.84 +2.1 4,008,667 - Sama_3381 0.84 +1.1 4,008,667 - Sama_3381 0.84 -2.3 4,008,685 - Sama_3381 0.87 -0.4 4,008,685 - Sama_3381 0.87 -1.8 4,008,693 - Sama_3381 0.89 +0.6 4,008,723 + -1.3 4,008,734 + -0.2 4,008,789 + +1.3 4,008,789 + -1.7 4,008,789 + -0.4 4,008,790 - -1.0 4,008,790 - -1.9 4,008,829 + -1.3 4,008,829 + -1.3 4,008,830 - -0.4 4,008,869 + -1.9
Or see this region's nucleotide sequence