Strain Fitness in Shewanella amazonensis SB2B around Sama_3310

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
3,938,387	+				-0.1
3,938,388	-				+1.1
3,938,388	-				+1.2
3,938,388	-				-1.7
3,938,388	-				+0.2
3,938,389	+				-0.3
3,938,434	+		Sama_3309	0.13	+0.5
3,938,434	+		Sama_3309	0.13	+0.3
3,938,434	+		Sama_3309	0.13	+1.9
3,938,434	+		Sama_3309	0.13	-1.9
3,938,435	-		Sama_3309	0.13	+2.1
3,938,435	-		Sama_3309	0.13	-0.9
3,938,435	-		Sama_3309	0.13	-0.0
3,938,435	-		Sama_3309	0.13	+0.5
3,938,435	-		Sama_3309	0.13	-0.5
3,938,522	-		Sama_3309	0.22	-2.2
3,938,560	+		Sama_3309	0.26	+0.3
3,938,682	+		Sama_3309	0.38	+1.1
3,938,682	+		Sama_3309	0.38	+1.8
3,938,705	+		Sama_3309	0.40	-0.9
3,938,706	-		Sama_3309	0.41	-1.7
3,938,706	-		Sama_3309	0.41	-1.2
3,938,735	+		Sama_3309	0.43	-2.0
3,938,735	+		Sama_3309	0.43	+0.1
3,938,735	+		Sama_3309	0.43	+1.5
3,938,736	-		Sama_3309	0.44	-1.1
3,938,737	+		Sama_3309	0.44	-2.8
3,938,737	+		Sama_3309	0.44	-0.5
3,938,738	-		Sama_3309	0.44	+4.5
3,938,773	+		Sama_3309	0.47	-0.3
3,938,774	-		Sama_3309	0.47	-1.1
3,938,814	+		Sama_3309	0.51	-0.5
3,938,843	+		Sama_3309	0.54	-2.1
3,938,857	-		Sama_3309	0.56	+0.3
3,938,935	+		Sama_3309	0.64	+0.3
3,938,971	-		Sama_3309	0.67	-2.6
3,938,971	-		Sama_3309	0.67	-2.4
3,938,971	-		Sama_3309	0.67	+0.2
3,938,977	+		Sama_3309	0.68	-1.3
3,938,977	+		Sama_3309	0.68	+1.8
3,938,978	-		Sama_3309	0.68	-2.0
3,938,978	-		Sama_3309	0.68	+2.3
3,938,981	-		Sama_3309	0.68	-0.6
3,939,022	+		Sama_3309	0.73	-0.7
3,939,022	+		Sama_3309	0.73	-2.1
3,939,022	+		Sama_3309	0.73	-2.3
3,939,022	+		Sama_3309	0.73	+0.5
3,939,022	+		Sama_3309	0.73	-0.0
3,939,023	-		Sama_3309	0.73	-2.6
3,939,023	-		Sama_3309	0.73	+0.0
3,939,023	-		Sama_3309	0.73	+1.1
3,939,023	-		Sama_3309	0.73	+2.6
3,939,023	-		Sama_3309	0.73	-0.0
3,939,023	-		Sama_3309	0.73	-0.4
3,939,062	-		Sama_3309	0.77	+1.3
3,939,062	-		Sama_3309	0.77	-1.7
3,939,070	+		Sama_3309	0.77	-0.5
3,939,070	+		Sama_3309	0.77	-2.2
3,939,070	+		Sama_3309	0.77	-3.2
3,939,070	+		Sama_3309	0.77	-1.6
3,939,070	+		Sama_3309	0.77	+0.2
3,939,180	+		Sama_3309	0.89	+2.1
3,939,181	-		Sama_3309	0.89	-0.3
3,939,181	-		Sama_3309	0.89	-1.1
3,939,181	-		Sama_3309	0.89	-1.2
3,939,238	+				-1.3
3,939,238	+				+1.6
3,939,238	+				-1.1
3,939,238	+				-2.1
3,939,238	+				-0.5
3,939,238	+				-2.6
3,939,238	+				-0.2
3,939,239	-				-1.5
3,939,239	-				-0.4
3,939,239	-				-1.0
3,939,239	-				+1.8
3,939,239	-				-0.9
3,939,239	-				+2.7
3,939,239	-				-0.7
3,939,239	-				-2.1
3,939,239	-				-0.1
3,939,239	-				+2.4
3,939,239	-				-0.5
3,939,239	-				-0.9
3,939,239	-				-1.7
3,939,239	-				+0.6
3,939,239	-				-0.7
3,939,242	+				-0.6
3,939,242	+				-1.5
3,939,242	+				-0.6
3,939,242	+				+2.8
3,939,242	+				+0.5
3,939,242	+				-2.6
3,939,242	+				+1.0
3,939,242	+				-1.2
3,939,242	+				-0.7
3,939,243	-				+0.5
3,939,243	-				-1.2
3,939,243	-				-0.2
3,939,243	-				-0.2
3,939,272	+				+1.2
3,939,272	+				+1.8
3,939,272	+				-0.4
3,939,272	+				+1.4
3,939,272	+				-0.8
3,939,280	-				-0.5
3,939,291	-				-0.7
3,939,306	+				-1.5
3,939,306	+				-2.1
3,939,307	-				+0.9
3,939,307	-				-0.5
3,939,307	-				-0.9
3,939,329	+				+1.4
3,939,329	+				+0.7
3,939,329	+				-1.8
3,939,329	+				-2.3
3,939,330	-				-2.5
3,939,330	-				-1.1
3,939,330	-				-1.5
3,939,330	-				-0.3
3,939,330	-				+1.6
3,939,330	-				+1.5
3,939,373	-				-1.8
3,939,382	+		Sama_3310	0.10	-0.5
3,939,413	+		Sama_3310	0.14	+2.1
3,939,413	+		Sama_3310	0.14	-1.2
3,939,414	-		Sama_3310	0.14	-0.7
3,939,414	-		Sama_3310	0.14	+2.1
3,939,420	-		Sama_3310	0.15	+0.8
3,939,420	-		Sama_3310	0.15	+1.5
3,939,428	+		Sama_3310	0.16	-1.1
3,939,428	+		Sama_3310	0.16	+1.7
3,939,428	+		Sama_3310	0.16	+0.7
3,939,481	+		Sama_3310	0.23	+0.2
3,939,482	-		Sama_3310	0.24	+0.6
3,939,482	-		Sama_3310	0.24	+0.9
3,939,487	-		Sama_3310	0.24	+0.3
3,939,487	-		Sama_3310	0.24	-1.2
3,939,526	+		Sama_3310	0.29	-1.0
3,939,526	+		Sama_3310	0.29	+0.5
3,939,526	+		Sama_3310	0.29	-1.5
3,939,526	+		Sama_3310	0.29	+0.5
3,939,527	-		Sama_3310	0.29	+1.4
3,939,527	-		Sama_3310	0.29	-2.1
3,939,601	+		Sama_3310	0.39	-1.7
3,939,601	+		Sama_3310	0.39	-1.4
3,939,601	+		Sama_3310	0.39	-1.5
3,939,601	+		Sama_3310	0.39	-0.5
3,939,601	+		Sama_3310	0.39	-1.2
3,939,601	+		Sama_3310	0.39	-0.5
3,939,602	-		Sama_3310	0.39	-0.5
3,939,602	-		Sama_3310	0.39	+1.1
3,939,602	-		Sama_3310	0.39	-1.9
3,939,602	-		Sama_3310	0.39	-0.7
3,939,609	-		Sama_3310	0.40	+0.8
3,939,617	+		Sama_3310	0.41	-0.3
3,939,617	+		Sama_3310	0.41	+1.4
3,939,617	+		Sama_3310	0.41	+0.4
3,939,618	-		Sama_3310	0.42	+0.8
3,939,618	-		Sama_3310	0.42	-1.6
3,939,618	-		Sama_3310	0.42	+0.4
3,939,661	+		Sama_3310	0.47	-0.3
3,939,661	+		Sama_3310	0.47	+1.2
3,939,662	-		Sama_3310	0.47	+1.2
3,939,662	-		Sama_3310	0.47	-1.6
3,939,662	-		Sama_3310	0.47	+1.4
3,939,662	-		Sama_3310	0.47	-1.3
3,939,677	-		Sama_3310	0.49	+0.5
3,939,677	-		Sama_3310	0.49	-2.3
3,939,745	-		Sama_3310	0.58	+2.1
3,939,750	+		Sama_3310	0.59	-0.7
3,939,750	+		Sama_3310	0.59	+0.5
3,939,750	+		Sama_3310	0.59	+1.9
3,939,750	+		Sama_3310	0.59	-2.4
3,939,838	+		Sama_3310	0.71	-0.1
3,939,838	+		Sama_3310	0.71	-1.1
3,939,838	+		Sama_3310	0.71	-0.2
3,939,838	+		Sama_3310	0.71	-1.6
3,939,839	-		Sama_3310	0.71	-1.5
3,939,839	-		Sama_3310	0.71	+0.8
3,939,839	-		Sama_3310	0.71	-0.6
3,939,839	-		Sama_3310	0.71	+0.6
3,939,878	+		Sama_3310	0.76	-0.9
3,939,878	+		Sama_3310	0.76	-0.8
3,939,879	-		Sama_3310	0.76	-0.5
3,939,950	+		Sama_3310	0.86	+1.0
3,939,950	+		Sama_3310	0.86	+1.4
3,939,950	+		Sama_3310	0.86	-2.8
3,939,950	+		Sama_3310	0.86	+0.9
3,939,950	+		Sama_3310	0.86	-1.1
3,939,950	+		Sama_3310	0.86	-2.2
3,939,950	+		Sama_3310	0.86	-0.5
3,939,950	+		Sama_3310	0.86	-0.0
3,939,951	-		Sama_3310	0.86	-2.7
3,939,951	-		Sama_3310	0.86	-1.8
3,939,951	-		Sama_3310	0.86	+0.1
3,939,951	-		Sama_3310	0.86	+1.1
3,939,951	-		Sama_3310	0.86	+1.1
3,939,951	-		Sama_3310	0.86	-1.4
3,939,951	-		Sama_3310	0.86	+0.6
3,939,951	-		Sama_3310	0.86	+0.7
3,939,951	-		Sama_3310	0.86	-2.1
3,939,951	-		Sama_3310	0.86	-3.2
3,939,951	-		Sama_3310	0.86	+0.5
3,939,951	-		Sama_3310	0.86	-0.6
3,939,951	-		Sama_3310	0.86	-1.7
3,939,951	-		Sama_3310	0.86	-2.1
3,939,951	-		Sama_3310	0.86	-0.4
3,939,951	-		Sama_3310	0.86	+0.5
3,939,974	-		Sama_3310	0.89	-0.9
3,939,974	-		Sama_3310	0.89	-0.0
3,939,989	+				+0.9
3,939,989	+				+1.0
3,939,990	-				-1.7
3,939,990	-				-1.1
3,940,027	-				-0.1
3,940,027	-				-0.9
3,940,034	-				+2.4
3,940,034	-				+0.3
3,940,046	+				-0.9
3,940,046	+				-0.4
3,940,046	+				+2.3
3,940,046	+				-1.7
3,940,046	+				+0.4
3,940,047	-				-0.9
3,940,047	-				+0.1
3,940,047	-				+0.1
3,940,047	-				-0.9
3,940,047	-				-1.9
3,940,047	-				+0.7
3,940,047	-				+0.5
3,940,047	-				-2.3
3,940,063	+				-0.9
3,940,064	-				+1.7
3,940,064	-				+2.1
3,940,064	-				+1.8
3,940,068	+				+1.7
3,940,069	-				-0.5
3,940,069	-				+1.1
3,940,069	-				+0.9
3,940,069	-				-0.2
3,940,087	+				+0.1
3,940,087	+				+0.4
3,940,139	+				-0.2
3,940,139	+				-1.2
3,940,139	+				+0.6
3,940,140	-				-3.0
3,940,140	-				-1.3
3,940,140	-				-1.3
3,940,140	-				+0.2
3,940,147	+				-2.6
3,940,147	+				-0.5
3,940,147	+				-0.7
3,940,148	-				-1.2
3,940,148	-				-1.5
3,940,194	-				-0.2
3,940,252	+				-0.8
3,940,253	-				-0.0
3,940,253	-				-0.6
3,940,267	-				+1.1
3,940,268	+				-0.7
3,940,268	+				-1.6
3,940,268	+				+1.2
3,940,268	+				+1.2
3,940,268	+				-0.5
3,940,268	+				-1.0
3,940,268	+				+0.8
3,940,268	+				+0.6
3,940,269	-				+3.9
3,940,269	-				+1.5
3,940,438	+				-0.9
3,940,438	+				-1.6
3,940,438	+				+0.7
3,940,438	+				-1.1
3,940,438	+				-2.4
3,940,438	+				-1.9
3,940,438	+				-0.0
3,940,438	+				+0.9
3,940,439	-				+1.1
3,940,439	-				+0.5
3,940,439	-				+0.4
3,940,472	+				-0.2
3,940,472	+				+0.4
3,940,472	+				+2.3
3,940,472	+				+1.4
3,940,472	+				-1.9
3,940,473	-				-1.7
3,940,473	-				+0.7
3,940,473	-				-1.3
3,940,473	-				+0.6
3,940,473	-				-1.1
3,940,473	-				+0.7
3,940,473	-				+0.3
3,940,473	-				-0.7
3,940,473	-				-2.7
3,940,473	-				-0.2
3,940,480	-				-0.7
3,940,524	+				-1.2
3,940,524	+				+0.3
3,940,525	-				-0.9
3,940,525	-				-3.4
3,940,525	-				-1.4
3,940,536	+				+0.6
3,940,536	+				+0.9
3,940,536	+				+1.7
3,940,536	+				+0.1
3,940,537	-				-0.3
3,940,537	-				-0.5
3,940,544	+				-0.7
3,940,544	+				-0.4
3,940,621	+				-0.3
3,940,621	+				-3.1
3,940,622	-				+3.3
3,940,701	+		Sama_3311	0.12	+1.5
3,940,702	-		Sama_3311	0.12	+1.5
3,940,735	+		Sama_3311	0.14	-2.1
3,940,735	+		Sama_3311	0.14	-0.5
3,940,795	-		Sama_3311	0.19	-0.9
3,940,809	+		Sama_3311	0.20	-0.2
3,940,955	+		Sama_3311	0.30	-1.2
3,940,955	+		Sama_3311	0.30	-1.3
3,940,955	+		Sama_3311	0.30	+0.5
3,940,955	+		Sama_3311	0.30	-0.4
3,940,955	+		Sama_3311	0.30	-1.1
3,940,955	+		Sama_3311	0.30	-0.1
3,940,955	+		Sama_3311	0.30	+0.9
3,940,955	+		Sama_3311	0.30	+0.0
3,940,955	+		Sama_3311	0.30	+2.6
3,940,956	-		Sama_3311	0.30	-2.3
3,940,956	-		Sama_3311	0.30	+0.3
3,940,956	-		Sama_3311	0.30	+1.4
3,940,956	-		Sama_3311	0.30	-0.5
3,940,956	-		Sama_3311	0.30	+0.4
3,940,956	-		Sama_3311	0.30	-1.9
3,940,956	-		Sama_3311	0.30	-2.0
3,940,956	-		Sama_3311	0.30	+0.8
3,940,956	-		Sama_3311	0.30	+2.0
3,940,956	-		Sama_3311	0.30	+0.4
3,940,956	-		Sama_3311	0.30	+2.0
3,940,956	-		Sama_3311	0.30	-0.5
3,940,956	-		Sama_3311	0.30	+0.4
3,940,956	-		Sama_3311	0.30	+0.0