Strain Fitness in Shewanella amazonensis SB2B around Sama_3277

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
3,890,987	+				-2.1
3,890,996	+				+1.1
3,890,996	+				+0.8
3,890,996	+				-1.1
3,890,997	-				+0.4
3,890,997	-				-0.5
3,891,026	+				+0.8
3,891,026	+				+1.5
3,891,055	+				+1.5
3,891,056	-				-0.1
3,891,056	-				+3.2
3,891,085	+				+2.8
3,891,138	+		Sama_3276	0.11	+0.5
3,891,210	-		Sama_3276	0.21	-0.9
3,891,237	-		Sama_3276	0.25	-1.5
3,891,237	-		Sama_3276	0.25	-0.5
3,891,237	-		Sama_3276	0.25	+0.8
3,891,237	-		Sama_3276	0.25	-0.5
3,891,253	+		Sama_3276	0.27	+1.1
3,891,253	+		Sama_3276	0.27	-0.1
3,891,253	+		Sama_3276	0.27	-0.8
3,891,254	-		Sama_3276	0.27	+0.9
3,891,254	-		Sama_3276	0.27	+0.4
3,891,278	+		Sama_3276	0.30	+1.5
3,891,278	+		Sama_3276	0.30	+0.3
3,891,279	-		Sama_3276	0.30	-1.2
3,891,289	+		Sama_3276	0.32	-1.0
3,891,289	+		Sama_3276	0.32	-1.1
3,891,289	+		Sama_3276	0.32	+1.0
3,891,290	-		Sama_3276	0.32	-0.4
3,891,290	-		Sama_3276	0.32	-1.8
3,891,290	-		Sama_3276	0.32	-0.6
3,891,290	-		Sama_3276	0.32	-2.3
3,891,290	-		Sama_3276	0.32	-0.7
3,891,291	+		Sama_3276	0.32	-0.1
3,891,291	+		Sama_3276	0.32	+1.1
3,891,291	+		Sama_3276	0.32	-0.8
3,891,291	+		Sama_3276	0.32	+1.9
3,891,291	+		Sama_3276	0.32	-2.5
3,891,291	+		Sama_3276	0.32	+2.1
3,891,291	+		Sama_3276	0.32	-2.4
3,891,291	+		Sama_3276	0.32	-1.6
3,891,291	+		Sama_3276	0.32	-1.7
3,891,291	+		Sama_3276	0.32	+0.2
3,891,291	+		Sama_3276	0.32	-0.2
3,891,291	+		Sama_3276	0.32	+0.3
3,891,291	+		Sama_3276	0.32	-1.5
3,891,292	-		Sama_3276	0.32	+0.3
3,891,292	-		Sama_3276	0.32	+0.1
3,891,292	-		Sama_3276	0.32	-1.3
3,891,292	-		Sama_3276	0.32	+2.4
3,891,292	-		Sama_3276	0.32	-3.4
3,891,292	-		Sama_3276	0.32	-1.2
3,891,292	-		Sama_3276	0.32	-1.4
3,891,335	+		Sama_3276	0.38	+0.5
3,891,335	+		Sama_3276	0.38	-0.9
3,891,335	+		Sama_3276	0.38	-0.7
3,891,335	+		Sama_3276	0.38	-2.0
3,891,336	-		Sama_3276	0.38	+2.7
3,891,336	-		Sama_3276	0.38	-2.2
3,891,336	-		Sama_3276	0.38	+0.4
3,891,336	-		Sama_3276	0.38	-0.5
3,891,344	+		Sama_3276	0.39	-0.5
3,891,345	-		Sama_3276	0.39	-0.8
3,891,345	-		Sama_3276	0.39	+0.3
3,891,345	-		Sama_3276	0.39	-0.2
3,891,345	-		Sama_3276	0.39	+0.2
3,891,353	+		Sama_3276	0.40	+0.8
3,891,354	-		Sama_3276	0.40	+0.2
3,891,355	+		Sama_3276	0.40	+1.0
3,891,355	+		Sama_3276	0.40	-2.0
3,891,355	+		Sama_3276	0.40	+0.1
3,891,355	+		Sama_3276	0.40	-2.5
3,891,355	+		Sama_3276	0.40	-1.2
3,891,355	+		Sama_3276	0.40	+0.1
3,891,408	-		Sama_3276	0.48	+0.1
3,891,408	-		Sama_3276	0.48	-0.9
3,891,458	+		Sama_3276	0.54	-1.3
3,891,478	+		Sama_3276	0.57	-0.8
3,891,478	+		Sama_3276	0.57	-0.5
3,891,478	+		Sama_3276	0.57	+1.1
3,891,484	+		Sama_3276	0.58	-1.2
3,891,484	+		Sama_3276	0.58	-0.7
3,891,484	+		Sama_3276	0.58	+0.2
3,891,484	+		Sama_3276	0.58	-1.7
3,891,484	+		Sama_3276	0.58	+0.1
3,891,485	-		Sama_3276	0.58	-2.1
3,891,485	-		Sama_3276	0.58	-0.8
3,891,485	-		Sama_3276	0.58	-2.3
3,891,485	-		Sama_3276	0.58	+1.0
3,891,485	-		Sama_3276	0.58	-0.0
3,891,485	-		Sama_3276	0.58	-0.9
3,891,485	-		Sama_3276	0.58	-0.2
3,891,534	+		Sama_3276	0.65	-1.7
3,891,535	-		Sama_3276	0.65	+1.1
3,891,567	+		Sama_3276	0.69	-0.9
3,891,567	+		Sama_3276	0.69	+0.1
3,891,568	-		Sama_3276	0.69	-1.0
3,891,586	+		Sama_3276	0.72	-1.6
3,891,674	+		Sama_3276	0.83	-2.2
3,891,674	+		Sama_3276	0.83	+1.4
3,891,674	+		Sama_3276	0.83	-0.4
3,891,674	+		Sama_3276	0.83	-1.1
3,891,676	+		Sama_3276	0.84	+2.1
3,891,713	+		Sama_3276	0.89	-0.1
3,891,750	+				-0.2
3,891,751	-				+0.5
3,891,762	+				-2.5
3,891,762	+				+0.5
3,891,780	+				+2.2
3,891,780	+				+2.1
3,891,780	+				+1.4
3,891,781	-				-1.0
3,891,783	+				-1.1
3,891,784	-				+1.2
3,891,784	-				-1.1
3,891,784	-				-0.6
3,891,786	+				+0.4
3,891,786	+				-2.4
3,891,787	-				-1.2
3,891,787	-				-0.2
3,891,787	-				-1.8
3,891,804	+				-1.7
3,891,804	+				+0.8
3,891,804	+				+0.1
3,891,804	+				+0.4
3,891,805	-				+0.8
3,891,805	-				-2.2
3,891,805	-				+0.5
3,891,805	-				-0.0
3,891,805	-				+0.7
3,891,854	+				+1.7
3,891,857	+				+0.5
3,891,858	-				-1.4
3,891,858	-				-2.4
3,891,984	+		Sama_3277	0.11	+1.5
3,891,984	+		Sama_3277	0.11	+0.4
3,891,985	-		Sama_3277	0.11	-0.7
3,891,985	-		Sama_3277	0.11	+0.5
3,891,985	-		Sama_3277	0.11	+0.1
3,891,985	-		Sama_3277	0.11	+0.6
3,891,986	+		Sama_3277	0.11	-0.5
3,891,986	+		Sama_3277	0.11	+0.3
3,891,987	-		Sama_3277	0.12	+0.9
3,891,987	-		Sama_3277	0.12	+0.9
3,891,993	+		Sama_3277	0.12	-0.4
3,891,994	-		Sama_3277	0.12	+0.5
3,892,040	+		Sama_3277	0.16	-1.4
3,892,041	-		Sama_3277	0.16	-0.6
3,892,068	-		Sama_3277	0.19	-0.8
3,892,068	-		Sama_3277	0.19	-1.2
3,892,117	-		Sama_3277	0.23	-0.7
3,892,202	+		Sama_3277	0.31	-3.0
3,892,202	+		Sama_3277	0.31	-0.0
3,892,202	+		Sama_3277	0.31	-0.8
3,892,203	-		Sama_3277	0.31	-1.8
3,892,203	-		Sama_3277	0.31	+0.8
3,892,203	-		Sama_3277	0.31	-1.4
3,892,203	-		Sama_3277	0.31	-2.8
3,892,203	-		Sama_3277	0.31	-1.8
3,892,203	-		Sama_3277	0.31	+0.0
3,892,225	-		Sama_3277	0.33	-0.6
3,892,232	+		Sama_3277	0.33	-0.6
3,892,317	+		Sama_3277	0.41	+0.3
3,892,317	+		Sama_3277	0.41	+1.0
3,892,317	+		Sama_3277	0.41	+0.8
3,892,317	+		Sama_3277	0.41	-2.2
3,892,317	+		Sama_3277	0.41	-3.6
3,892,318	-		Sama_3277	0.41	+1.0
3,892,318	-		Sama_3277	0.41	+0.7
3,892,318	-		Sama_3277	0.41	+0.0
3,892,327	+		Sama_3277	0.42	+2.5
3,892,357	+		Sama_3277	0.44	-1.5
3,892,375	+		Sama_3277	0.46	-1.6
3,892,375	+		Sama_3277	0.46	-0.2
3,892,376	-		Sama_3277	0.46	-2.7
3,892,398	-		Sama_3277	0.48	+1.5
3,892,408	+		Sama_3277	0.49	-2.4
3,892,408	+		Sama_3277	0.49	-0.9
3,892,408	+		Sama_3277	0.49	-2.1
3,892,408	+		Sama_3277	0.49	-1.6
3,892,408	+		Sama_3277	0.49	+1.5
3,892,408	+		Sama_3277	0.49	-0.2
3,892,408	+		Sama_3277	0.49	+0.9
3,892,409	-		Sama_3277	0.49	+1.5
3,892,409	-		Sama_3277	0.49	-1.2
3,892,409	-		Sama_3277	0.49	+1.6
3,892,409	-		Sama_3277	0.49	-0.9
3,892,409	-		Sama_3277	0.49	-1.8
3,892,409	-		Sama_3277	0.49	+0.8
3,892,409	-		Sama_3277	0.49	-0.0
3,892,409	-		Sama_3277	0.49	+1.5
3,892,409	-		Sama_3277	0.49	-0.5
3,892,409	-		Sama_3277	0.49	+0.2
3,892,409	-		Sama_3277	0.49	+0.7
3,892,409	-		Sama_3277	0.49	+0.7
3,892,479	+		Sama_3277	0.55	+0.9
3,892,479	+		Sama_3277	0.55	+0.1
3,892,479	+		Sama_3277	0.55	-0.1
3,892,479	+		Sama_3277	0.55	-0.0
3,892,559	+		Sama_3277	0.62	-1.0
3,892,560	-		Sama_3277	0.62	-1.5
3,892,560	-		Sama_3277	0.62	-0.3
3,892,560	-		Sama_3277	0.62	+0.4
3,892,738	+		Sama_3277	0.78	-0.9
3,892,738	+		Sama_3277	0.78	+0.1
3,892,739	-		Sama_3277	0.78	-1.8
3,892,815	-		Sama_3277	0.85	-2.8
3,892,815	-		Sama_3277	0.85	-0.7
3,892,815	-		Sama_3277	0.85	-1.2
3,892,911	-				-0.3
3,892,941	+				+0.7
3,892,941	+				+1.1
3,892,942	-				+0.0
3,892,956	+				+1.8
3,892,957	-				+0.5
3,892,966	+				+1.1
3,892,966	+				-0.4
3,892,966	+				+1.3
3,892,967	-				-0.4
3,892,999	+				+1.9
3,892,999	+				-0.5
3,892,999	+				-0.4
3,892,999	+				+1.8
3,892,999	+				+1.1
3,893,000	-				-1.1
3,893,000	-				+0.8
3,893,000	-				+2.9
3,893,035	+				-0.1
3,893,036	-				+1.5
3,893,056	+				-0.7
3,893,056	+				-1.7
3,893,056	+				-1.6
3,893,056	+				-0.9
3,893,056	+				-1.9
3,893,056	+				-2.8
3,893,056	+				-0.2
3,893,057	-				+0.6
3,893,057	-				-2.0
3,893,057	-				-0.1
3,893,057	-				-1.1
3,893,061	+				-2.4
3,893,062	-				+0.1
3,893,066	+				-0.6
3,893,066	+				-0.7
3,893,066	+				-0.4
3,893,066	+				-0.2
3,893,067	-				+0.3
3,893,067	-				-0.4
3,893,067	-				-0.2
3,893,067	-				+1.0
3,893,067	-				-0.3
3,893,067	-				+1.5
3,893,067	-				-1.0
3,893,075	+				+0.6
3,893,076	-				-0.8
3,893,078	+				-1.7
3,893,078	+				-1.3
3,893,079	-				-0.7
3,893,100	-				-2.5
3,893,100	-				+0.7
3,893,117	+				+2.5
3,893,117	+				+1.0
3,893,117	+				+0.0
3,893,117	+				-1.5
3,893,118	-				+0.5
3,893,118	-				+0.5
3,893,118	-				-0.6
3,893,118	-				+1.4
3,893,121	+				+2.1
3,893,121	+				+1.8
3,893,121	+				-0.9
3,893,121	+				-0.9
3,893,122	-				-0.3
3,893,122	-				-0.5
3,893,122	-				-2.1
3,893,122	-				-0.4
3,893,125	+				+0.4
3,893,126	-				+1.0
3,893,126	-				+1.6
3,893,126	-				-1.6
3,893,293	-		Sama_3278	0.11	-2.4
3,893,319	-		Sama_3278	0.12	-1.1
3,893,319	-		Sama_3278	0.12	-1.3
3,893,326	+		Sama_3278	0.13	-2.0
3,893,326	+		Sama_3278	0.13	+0.6
3,893,407	+		Sama_3278	0.18	+0.5
3,893,407	+		Sama_3278	0.18	-2.0
3,893,407	+		Sama_3278	0.18	+1.5
3,893,407	+		Sama_3278	0.18	+1.6
3,893,407	+		Sama_3278	0.18	+3.5
3,893,407	+		Sama_3278	0.18	+1.7
3,893,407	+		Sama_3278	0.18	+0.4
3,893,408	-		Sama_3278	0.18	+0.3
3,893,408	-		Sama_3278	0.18	-0.6
3,893,408	-		Sama_3278	0.18	+0.8
3,893,408	-		Sama_3278	0.18	+0.1
3,893,409	+		Sama_3278	0.18	+0.1
3,893,409	+		Sama_3278	0.18	-0.8
3,893,409	+		Sama_3278	0.18	+0.5
3,893,409	+		Sama_3278	0.18	-1.4
3,893,409	+		Sama_3278	0.18	-1.4
3,893,409	+		Sama_3278	0.18	+1.1
3,893,409	+		Sama_3278	0.18	-0.5
3,893,410	-		Sama_3278	0.18	-1.2
3,893,410	-		Sama_3278	0.18	+1.1
3,893,410	-		Sama_3278	0.18	-0.3
3,893,410	-		Sama_3278	0.18	+0.6
3,893,410	-		Sama_3278	0.18	-0.5
3,893,410	-		Sama_3278	0.18	-0.7
3,893,410	-		Sama_3278	0.18	+0.5
3,893,444	+		Sama_3278	0.20	-1.4
3,893,445	-		Sama_3278	0.20	+0.5
3,893,494	+		Sama_3278	0.23	+0.4
3,893,495	-		Sama_3278	0.23	+0.6
3,893,566	-		Sama_3278	0.28	-0.2
3,893,566	-		Sama_3278	0.28	-1.8
3,893,611	+		Sama_3278	0.31	+0.1
3,893,694	+		Sama_3278	0.36	-1.2
3,893,694	+		Sama_3278	0.36	+1.1
3,893,695	-		Sama_3278	0.36	-0.6
3,893,695	-		Sama_3278	0.36	+1.3
3,893,695	-		Sama_3278	0.36	-1.3
3,893,695	-		Sama_3278	0.36	-0.5
3,893,695	-		Sama_3278	0.36	+2.3
3,893,695	-		Sama_3278	0.36	+3.6
3,893,797	-		Sama_3278	0.42	-1.6
3,893,863	+		Sama_3278	0.47	+0.1
3,893,864	-		Sama_3278	0.47	-1.3
3,893,864	-		Sama_3278	0.47	-2.6
3,893,919	+		Sama_3278	0.50	-1.6
3,893,919	+		Sama_3278	0.50	-0.4
3,893,919	+		Sama_3278	0.50	+1.0
3,893,919	+		Sama_3278	0.50	-3.1
3,893,919	+		Sama_3278	0.50	+0.3
3,893,920	-		Sama_3278	0.50	-0.7
3,893,920	-		Sama_3278	0.50	+1.9
3,893,920	-		Sama_3278	0.50	+0.8
3,893,920	-		Sama_3278	0.50	-0.7
3,893,920	-		Sama_3278	0.50	-0.5