Strain Fitness in Shewanella amazonensis SB2B around Sama_3217

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
3,808,018	+		Sama_3215	0.83	-2.3
3,808,228	+				-1.5
3,808,229	-				+0.5
3,808,263	+				-1.9
3,808,263	+				-0.9
3,808,263	+				-1.1
3,808,264	-				-1.3
3,808,274	+				-0.3
3,808,274	+				-1.8
3,808,274	+				-1.5
3,808,275	-				-1.4
3,808,275	-				-1.8
3,808,275	-				+0.5
3,808,275	-				-1.3
3,808,275	-				-0.8
3,808,275	-				+4.1
3,808,275	-				-2.5
3,808,279	+				-0.6
3,808,280	-				+0.6
3,808,280	-				-0.6
3,808,310	-				+1.5
3,808,310	-				+1.8
3,808,310	-				+1.0
3,808,310	-				-0.9
3,808,310	-				-1.3
3,808,331	+				+0.4
3,808,331	+				+2.1
3,808,346	-				-1.3
3,808,347	+				+0.5
3,808,347	+				-0.9
3,808,347	+				-0.0
3,808,347	+				-2.2
3,808,347	+				-1.6
3,808,347	+				+2.6
3,808,347	+				-0.1
3,808,347	+				-3.2
3,808,347	+				-0.3
3,808,347	+				+0.3
3,808,347	+				+2.5
3,808,347	+				+0.8
3,808,348	-				-0.3
3,808,354	+				+1.3
3,808,354	+				+0.1
3,808,354	+				-0.3
3,808,354	+				+0.5
3,808,354	+				-1.2
3,808,354	+				-2.2
3,808,354	+				-1.8
3,808,354	+				+0.8
3,808,354	+				-0.2
3,808,355	-				-0.9
3,808,355	-				-0.6
3,808,447	-		Sama_3216	0.15	-1.1
3,808,447	-		Sama_3216	0.15	-0.5
3,808,447	-		Sama_3216	0.15	-0.3
3,808,534	-		Sama_3216	0.42	-0.9
3,808,534	-		Sama_3216	0.42	-0.8
3,808,553	-		Sama_3216	0.48	+0.5
3,808,622	-		Sama_3216	0.69	-1.3
3,808,663	+		Sama_3216	0.81	-0.3
3,808,721	+				+2.0
3,808,721	+				+0.5
3,808,765	-				+1.0
3,808,808	+				-2.3
3,808,808	+				+0.1
3,808,808	+				+0.5
3,808,820	+				-3.8
3,808,820	+				-0.5
3,808,820	+				+2.1
3,808,820	+				+0.1
3,808,820	+				-0.8
3,808,835	+				-1.3
3,808,842	+				-0.3
3,808,874	+				+0.2
3,810,200	+				+0.4
3,810,200	+				-0.8
3,810,201	-				-0.1
3,810,253	+				-0.6
3,810,394	-		Sama_3218	0.10	-0.1
3,810,398	+		Sama_3218	0.11	-1.6
3,810,398	+		Sama_3218	0.11	+1.8
3,810,399	-		Sama_3218	0.11	-1.3
3,810,454	+		Sama_3218	0.16	-0.5
3,810,454	+		Sama_3218	0.16	+0.5
3,810,455	-		Sama_3218	0.16	+0.6
3,810,455	-		Sama_3218	0.16	+0.5
3,810,455	-		Sama_3218	0.16	+3.4
3,810,455	-		Sama_3218	0.16	-0.4
3,810,474	-		Sama_3218	0.18	-0.3
3,810,474	-		Sama_3218	0.18	-0.1
3,810,478	+		Sama_3218	0.19	+2.1
3,810,478	+		Sama_3218	0.19	+1.4
3,810,479	-		Sama_3218	0.19	-1.1
3,810,479	-		Sama_3218	0.19	+1.8
3,810,479	-		Sama_3218	0.19	-2.3
3,810,479	-		Sama_3218	0.19	-2.1
3,810,542	+		Sama_3218	0.26	-2.4
3,810,542	+		Sama_3218	0.26	+0.5
3,810,542	+		Sama_3218	0.26	+0.5
3,810,542	+		Sama_3218	0.26	+1.2
3,810,542	+		Sama_3218	0.26	-1.5
3,810,542	+		Sama_3218	0.26	-2.3
3,810,542	+		Sama_3218	0.26	-2.2
3,810,542	+		Sama_3218	0.26	+2.1
3,810,542	+		Sama_3218	0.26	+0.2
3,810,543	-		Sama_3218	0.26	+0.1
3,810,543	-		Sama_3218	0.26	-2.1
3,810,543	-		Sama_3218	0.26	-1.3
3,810,543	-		Sama_3218	0.26	+2.0
3,810,543	-		Sama_3218	0.26	-2.0
3,810,543	-		Sama_3218	0.26	-0.7
3,810,543	-		Sama_3218	0.26	-2.3
3,810,543	-		Sama_3218	0.26	-1.9
3,810,544	+		Sama_3218	0.26	+1.2
3,810,544	+		Sama_3218	0.26	-1.1
3,810,544	+		Sama_3218	0.26	+0.4
3,810,544	+		Sama_3218	0.26	-0.1
3,810,545	-		Sama_3218	0.26	-1.3
3,810,545	-		Sama_3218	0.26	-1.8
3,810,545	-		Sama_3218	0.26	+1.6
3,810,582	+		Sama_3218	0.30	-2.3
3,810,583	-		Sama_3218	0.30	-0.4
3,810,621	+		Sama_3218	0.34	-1.1
3,810,621	+		Sama_3218	0.34	+0.8
3,810,621	+		Sama_3218	0.34	+0.9
3,810,622	-		Sama_3218	0.34	+0.4
3,810,622	-		Sama_3218	0.34	+0.8
3,810,622	-		Sama_3218	0.34	+3.1
3,810,622	-		Sama_3218	0.34	+0.1
3,810,622	-		Sama_3218	0.34	+1.7
3,810,622	-		Sama_3218	0.34	+0.1
3,810,671	+		Sama_3218	0.39	+1.3
3,810,672	-		Sama_3218	0.39	+1.6
3,810,685	+		Sama_3218	0.40	+0.2
3,810,685	+		Sama_3218	0.40	-1.1
3,810,686	-		Sama_3218	0.41	-1.5
3,810,686	-		Sama_3218	0.41	+1.2
3,810,686	-		Sama_3218	0.41	-1.3
3,810,686	-		Sama_3218	0.41	+1.6
3,810,686	-		Sama_3218	0.41	+1.3
3,810,686	-		Sama_3218	0.41	+1.1
3,810,688	-		Sama_3218	0.41	-0.1
3,810,708	+		Sama_3218	0.43	+0.3
3,810,748	+		Sama_3218	0.47	-1.2
3,810,749	-		Sama_3218	0.47	-1.8
3,810,749	-		Sama_3218	0.47	+1.5
3,810,749	-		Sama_3218	0.47	+0.9
3,810,821	+		Sama_3218	0.55	-1.4
3,810,822	-		Sama_3218	0.55	-1.3
3,810,837	+		Sama_3218	0.56	-0.2
3,810,837	+		Sama_3218	0.56	-1.9
3,810,837	+		Sama_3218	0.56	+1.5
3,810,838	-		Sama_3218	0.56	+0.1
3,810,838	-		Sama_3218	0.56	-2.3
3,810,838	-		Sama_3218	0.56	-0.5
3,810,944	+		Sama_3218	0.67	+0.2
3,810,944	+		Sama_3218	0.67	+0.2
3,810,944	+		Sama_3218	0.67	-0.5
3,810,947	+		Sama_3218	0.68	-1.0
3,810,947	+		Sama_3218	0.68	+5.7
3,810,947	+		Sama_3218	0.68	-1.2
3,810,947	+		Sama_3218	0.68	+2.1
3,810,947	+		Sama_3218	0.68	+1.6
3,810,947	+		Sama_3218	0.68	+2.2
3,811,067	-		Sama_3218	0.80	+1.3