Strain Fitness in Shewanella amazonensis SB2B around Sama_3208

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
3,796,802	+		Sama_3206	0.76	-0.9
3,796,802	+		Sama_3206	0.76	-1.4
3,796,876	+				+0.8
3,796,889	+				+0.8
3,796,889	+				-1.8
3,796,889	+				-1.3
3,796,889	+				-0.9
3,796,947	+				+0.9
3,796,948	-				+3.6
3,796,960	+				+1.3
3,796,960	+				+1.3
3,796,980	+		Sama_3207	0.11	+0.9
3,796,981	-		Sama_3207	0.11	+1.8
3,796,984	+		Sama_3207	0.12	-0.3
3,796,984	+		Sama_3207	0.12	+3.6
3,796,984	+		Sama_3207	0.12	+0.5
3,796,984	+		Sama_3207	0.12	-1.5
3,796,985	-		Sama_3207	0.12	+0.7
3,797,011	+		Sama_3207	0.15	+2.1
3,797,011	+		Sama_3207	0.15	-0.5
3,797,012	-		Sama_3207	0.16	+0.5
3,797,016	-		Sama_3207	0.16	+3.9
3,797,023	+		Sama_3207	0.17	+3.1
3,797,023	+		Sama_3207	0.17	+0.3
3,797,023	+		Sama_3207	0.17	+3.1
3,797,023	+		Sama_3207	0.17	-0.3
3,797,023	+		Sama_3207	0.17	+0.1
3,797,023	+		Sama_3207	0.17	+1.7
3,797,024	-		Sama_3207	0.17	+1.3
3,797,148	-		Sama_3207	0.34	+1.6
3,797,156	+		Sama_3207	0.35	+8.0
3,797,189	+		Sama_3207	0.39	+1.5
3,797,238	+		Sama_3207	0.46	+0.1
3,797,247	-		Sama_3207	0.47	+1.6
3,797,247	-		Sama_3207	0.47	+0.5
3,797,247	-		Sama_3207	0.47	+0.5
3,797,247	-		Sama_3207	0.47	+2.9
3,797,352	-		Sama_3207	0.61	+1.8
3,797,362	+		Sama_3207	0.62	-0.7
3,797,418	+		Sama_3207	0.69	+0.8
3,797,418	+		Sama_3207	0.69	+2.5
3,797,418	+		Sama_3207	0.69	+1.1
3,797,474	+		Sama_3207	0.77	+0.7
3,797,474	+		Sama_3207	0.77	+1.5
3,797,475	-		Sama_3207	0.77	-0.3
3,797,475	-		Sama_3207	0.77	+0.8
3,797,494	+		Sama_3207	0.80	-0.5
3,797,494	+		Sama_3207	0.80	-0.5
3,797,494	+		Sama_3207	0.80	+1.6
3,797,498	-		Sama_3207	0.80	-1.3
3,797,602	+				+1.2
3,797,602	+				-0.9
3,797,711	+				+2.0
3,797,711	+				+0.3
3,797,722	+				+2.1
3,797,722	+				-0.3
3,797,728	+				-0.4
3,797,728	+				-3.0
3,797,728	+				+3.6
3,797,728	+				-0.4
3,797,728	+				+1.3
3,797,728	+				-0.3
3,797,729	-				-1.6
3,797,729	-				-0.2
3,797,729	-				+2.1
3,797,729	-				+1.4
3,797,741	+				+2.5
3,797,741	+				-1.3
3,797,741	+				+3.3
3,797,741	+				+2.1
3,797,741	+				+0.7
3,797,742	-				+4.2
3,797,742	-				+4.5
3,797,742	-				+4.5
3,797,742	-				-0.6
3,797,752	+				+3.6
3,797,753	-				-0.4
3,797,753	-				+2.0
3,797,758	+				+4.3
3,797,758	+				+1.6
3,797,759	-				+4.0
3,797,852	+		Sama_3208	0.20	+2.5
3,797,852	+		Sama_3208	0.20	+3.6
3,797,852	+		Sama_3208	0.20	+3.7
3,797,852	+		Sama_3208	0.20	-0.3
3,797,852	+		Sama_3208	0.20	+1.6
3,797,853	-		Sama_3208	0.21	+3.2
3,797,853	-		Sama_3208	0.21	+2.7
3,797,853	-		Sama_3208	0.21	+2.8
3,797,853	-		Sama_3208	0.21	+4.9
3,797,853	-		Sama_3208	0.21	+3.1
3,797,853	-		Sama_3208	0.21	+3.6
3,797,998	+		Sama_3208	0.48	+2.2
3,797,998	+		Sama_3208	0.48	+4.1
3,797,998	+		Sama_3208	0.48	-1.3
3,797,998	+		Sama_3208	0.48	+1.9
3,797,998	+		Sama_3208	0.48	+2.5
3,797,998	+		Sama_3208	0.48	+2.3
3,797,999	-		Sama_3208	0.48	+3.1
3,797,999	-		Sama_3208	0.48	+2.1
3,798,019	+		Sama_3208	0.52	+0.7
3,798,020	-		Sama_3208	0.52	-0.6
3,798,020	-		Sama_3208	0.52	+2.0
3,798,036	-		Sama_3208	0.55	+0.6
3,798,040	+		Sama_3208	0.55	+1.9
3,798,040	+		Sama_3208	0.55	+2.1
3,798,040	+		Sama_3208	0.55	+1.1
3,798,041	-		Sama_3208	0.56	+3.5
3,798,068	+		Sama_3208	0.61	+1.6
3,798,069	-		Sama_3208	0.61	+2.6
3,798,069	-		Sama_3208	0.61	+1.9
3,798,105	+		Sama_3208	0.68	-0.8
3,798,105	+		Sama_3208	0.68	-1.1
3,798,106	-		Sama_3208	0.68	+3.9
3,798,106	-		Sama_3208	0.68	+3.4
3,798,106	-		Sama_3208	0.68	+0.9
3,798,106	-		Sama_3208	0.68	+3.6
3,798,107	+		Sama_3208	0.68	+2.8
3,798,107	+		Sama_3208	0.68	+3.4
3,798,107	+		Sama_3208	0.68	+2.0
3,798,107	+		Sama_3208	0.68	-2.3
3,798,107	+		Sama_3208	0.68	+2.4
3,798,108	-		Sama_3208	0.68	+4.1
3,798,108	-		Sama_3208	0.68	+1.7
3,798,121	+		Sama_3208	0.71	-0.4
3,798,121	+		Sama_3208	0.71	+2.7
3,798,121	+		Sama_3208	0.71	+4.1
3,798,121	+		Sama_3208	0.71	+0.5
3,798,122	-		Sama_3208	0.71	+1.3
3,798,122	-		Sama_3208	0.71	+0.6
3,798,122	-		Sama_3208	0.71	+4.1
3,798,128	+		Sama_3208	0.72	+0.9
3,798,129	-		Sama_3208	0.72	-0.7
3,798,129	-		Sama_3208	0.72	+2.8
3,798,195	+		Sama_3208	0.84	+3.1
3,798,195	+		Sama_3208	0.84	-0.3
3,798,195	+		Sama_3208	0.84	+1.1
3,798,195	+		Sama_3208	0.84	+3.1
3,798,195	+		Sama_3208	0.84	+1.1
3,798,195	+		Sama_3208	0.84	-0.4
3,798,195	+		Sama_3208	0.84	+2.7
3,798,196	-		Sama_3208	0.85	+4.0
3,798,196	-		Sama_3208	0.85	-0.3
3,798,196	-		Sama_3208	0.85	+3.7
3,798,196	-		Sama_3208	0.85	+2.3
3,798,196	-		Sama_3208	0.85	+3.4
3,798,225	+				+2.1
3,798,225	+				+3.1
3,798,226	-				+5.5
3,798,226	-				-2.7
3,798,226	-				+2.1
3,798,226	-				-1.4
3,798,248	+				-1.0
3,798,248	+				+0.9
3,798,248	+				+2.3
3,798,272	+				-0.2
3,798,272	+				+0.5
3,798,276	+				+1.4
3,798,277	-				+2.9
3,798,277	-				-0.5
3,798,277	-				+3.2
3,798,277	-				+2.7
3,798,277	-				+1.1
3,798,280	+				-0.9
3,798,280	+				-0.6
3,798,280	+				+3.8
3,798,281	-				+3.4
3,798,281	-				+2.4
3,798,281	-				+4.9
3,798,281	-				+3.3
3,798,281	-				+2.1
3,798,281	-				+2.5
3,798,288	+				+0.6
3,798,288	+				+1.8
3,798,293	+				-0.6
3,798,293	+				+3.0
3,798,293	+				+2.7
3,798,293	+				+1.4
3,798,293	+				-1.5
3,798,294	-				+3.8
3,798,294	-				+3.1
3,798,294	-				+2.7
3,798,301	+				+2.0
3,798,301	+				+0.4
3,798,301	+				+1.6
3,798,302	-				+3.9
3,798,302	-				+3.4
3,798,369	+				+2.4
3,798,413	-		Sama_3209	0.14	-1.1
3,798,479	+		Sama_3209	0.22	+0.1
3,798,479	+		Sama_3209	0.22	+2.4
3,798,480	-		Sama_3209	0.22	-0.5
3,798,480	-		Sama_3209	0.22	+3.7
3,798,571	-		Sama_3209	0.33	+1.0
3,798,571	-		Sama_3209	0.33	-1.0
3,798,599	+		Sama_3209	0.37	+2.2
3,798,599	+		Sama_3209	0.37	+2.0
3,798,600	-		Sama_3209	0.37	+4.5
3,798,600	-		Sama_3209	0.37	+3.8
3,798,602	-		Sama_3209	0.37	+0.1
3,798,602	-		Sama_3209	0.37	+3.1
3,798,803	+		Sama_3209	0.62	+2.5
3,798,803	+		Sama_3209	0.62	-1.4
3,798,807	+		Sama_3209	0.63	+0.1
3,798,807	+		Sama_3209	0.63	+0.2
3,798,807	+		Sama_3209	0.63	+2.6
3,798,807	+		Sama_3209	0.63	+3.0
3,798,807	+		Sama_3209	0.63	-2.3
3,798,807	+		Sama_3209	0.63	+1.2
3,798,807	+		Sama_3209	0.63	+2.9
3,798,807	+		Sama_3209	0.63	+4.1
3,798,807	+		Sama_3209	0.63	+1.6
3,798,807	+		Sama_3209	0.63	+0.4
3,798,808	-		Sama_3209	0.63	+4.5
3,798,808	-		Sama_3209	0.63	-0.3
3,798,808	-		Sama_3209	0.63	+2.5
3,798,808	-		Sama_3209	0.63	-0.3
3,798,808	-		Sama_3209	0.63	+4.0
3,798,808	-		Sama_3209	0.63	-0.5
3,798,808	-		Sama_3209	0.63	-1.5
3,798,808	-		Sama_3209	0.63	+2.1
3,798,808	-		Sama_3209	0.63	+0.5
3,798,829	+		Sama_3209	0.66	+0.7
3,798,829	+		Sama_3209	0.66	+1.1
3,798,833	-		Sama_3209	0.66	-0.7
3,798,833	-		Sama_3209	0.66	+2.1
3,798,889	+		Sama_3209	0.73	+3.1
3,798,889	+		Sama_3209	0.73	+2.0
3,798,890	-		Sama_3209	0.73	+3.4
3,798,890	-		Sama_3209	0.73	+0.5
3,798,890	-		Sama_3209	0.73	+2.8
3,798,890	-		Sama_3209	0.73	+3.3
3,798,890	-		Sama_3209	0.73	+2.9
3,798,929	+		Sama_3209	0.78	+1.1
3,798,929	+		Sama_3209	0.78	+2.3
3,798,986	+		Sama_3209	0.85	+0.1
3,798,986	+		Sama_3209	0.85	+3.0
3,798,986	+		Sama_3209	0.85	+0.2
3,798,987	-		Sama_3209	0.85	+2.1
3,798,990	+		Sama_3209	0.86	-0.9
3,798,990	+		Sama_3209	0.86	+3.4
3,798,990	+		Sama_3209	0.86	+2.3
3,798,990	+		Sama_3209	0.86	+3.1
3,798,991	-		Sama_3209	0.86	+3.5
3,798,995	+		Sama_3209	0.86	-2.2
3,798,995	+		Sama_3209	0.86	+2.6
3,798,995	+		Sama_3209	0.86	-1.2
3,798,995	+		Sama_3209	0.86	+3.2
3,798,996	-		Sama_3209	0.86	+2.6
3,798,996	-		Sama_3209	0.86	+1.1
3,798,996	-		Sama_3209	0.86	+1.8
3,799,011	+		Sama_3209	0.88	+1.8
3,799,011	+		Sama_3209	0.88	-1.3
3,799,056	+				+1.7
3,799,056	+				+2.6
3,799,056	+				+1.3
3,799,057	-				+3.4
3,799,057	-				+2.6
3,799,057	-				+0.4
3,799,058	+				+4.5
3,799,058	+				-1.0
3,799,058	+				+2.7
3,799,059	-				+3.1
3,799,059	-				+3.3
3,799,103	+				+3.9
3,799,134	+				+3.6
3,799,134	+				+3.1
3,799,136	+				+0.7
3,799,136	+				+5.1
3,799,136	+				-0.9
3,799,136	+				+2.3
3,799,136	+				-1.9
3,799,136	+				+2.1
3,799,137	-				+2.3
3,799,137	-				+1.5
3,799,137	-				+1.2
3,799,137	-				+0.9
3,799,137	-				+0.3
3,799,137	-				+3.8
3,799,137	-				+4.4
3,799,171	+				+2.1
3,799,172	-				+1.5
3,799,172	-				+4.0
3,799,172	-				+3.5
3,799,173	+				+4.1
3,799,173	+				+2.8
3,799,173	+				+3.1
3,799,199	-				+0.5
3,799,199	-				+3.2
3,799,242	-				-0.2