Strain Fitness in Shewanella amazonensis SB2B around Sama_3187

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
3,777,915	+				-0.4
3,777,915	+				-2.1
3,777,915	+				-1.5
3,777,916	-				-0.1
3,777,916	-				-0.8
3,777,916	-				-2.3
3,777,916	-				-0.8
3,777,916	-				-0.3
3,777,941	+				-1.3
3,777,942	-				-2.3
3,777,961	-				+4.4
3,777,997	+				-2.3
3,778,073	+				-1.7
3,778,073	+				-3.4
3,778,073	+				-1.0
3,778,073	+				-1.3
3,778,209	+				+0.1
3,778,209	+				-1.1
3,778,209	+				-3.0
3,778,210	-				+1.7
3,778,267	+				+0.7
3,778,299	+				-0.1
3,778,300	-				+3.9
3,778,381	-				+2.2
3,778,410	+		Sama_3186	0.14	+0.8
3,778,410	+		Sama_3186	0.14	+0.5
3,778,410	+		Sama_3186	0.14	-1.0
3,778,410	+		Sama_3186	0.14	+0.3
3,778,411	-		Sama_3186	0.15	+4.6
3,778,411	-		Sama_3186	0.15	+3.0
3,778,411	-		Sama_3186	0.15	+1.6
3,778,411	-		Sama_3186	0.15	+3.1
3,778,411	-		Sama_3186	0.15	+2.3
3,778,438	+		Sama_3186	0.20	-0.4
3,778,438	+		Sama_3186	0.20	+2.5
3,778,439	-		Sama_3186	0.20	+0.9
3,778,566	-		Sama_3186	0.43	+2.2
3,778,570	-		Sama_3186	0.44	+4.2
3,778,570	-		Sama_3186	0.44	+4.9
3,778,633	+		Sama_3186	0.56	-2.0
3,778,633	+		Sama_3186	0.56	-1.9
3,778,633	+		Sama_3186	0.56	-0.3
3,778,634	-		Sama_3186	0.56	-0.6
3,778,634	-		Sama_3186	0.56	+3.9
3,778,634	-		Sama_3186	0.56	+4.8
3,778,649	-		Sama_3186	0.59	+4.8
3,778,823	+				-1.4
3,778,823	+				-1.5
3,778,823	+				-1.5
3,778,830	+				-0.8
3,778,843	-				+4.7
3,778,855	-				+5.4
3,778,855	-				-1.1
3,779,048	+		Sama_3187	0.14	+0.7
3,779,049	-		Sama_3187	0.14	+1.7
3,779,049	-		Sama_3187	0.14	+5.1
3,779,049	-		Sama_3187	0.14	+2.4
3,779,067	+		Sama_3187	0.16	+0.2
3,779,067	+		Sama_3187	0.16	+1.5
3,779,067	+		Sama_3187	0.16	+4.8
3,779,068	-		Sama_3187	0.16	+2.9
3,779,068	-		Sama_3187	0.16	+4.3
3,779,068	-		Sama_3187	0.16	+3.8
3,779,068	-		Sama_3187	0.16	+5.5
3,779,068	-		Sama_3187	0.16	+4.3
3,779,068	-		Sama_3187	0.16	+0.9
3,779,069	+		Sama_3187	0.16	+1.0
3,779,070	-		Sama_3187	0.16	+5.9
3,779,070	-		Sama_3187	0.16	+0.8
3,779,070	-		Sama_3187	0.16	+3.6
3,779,240	+		Sama_3187	0.29	+1.9
3,779,247	+		Sama_3187	0.30	+2.6
3,779,248	-		Sama_3187	0.30	+4.7
3,779,248	-		Sama_3187	0.30	+4.9
3,779,248	-		Sama_3187	0.30	+3.5
3,779,286	+		Sama_3187	0.33	+1.9
3,779,286	+		Sama_3187	0.33	+2.0
3,779,287	-		Sama_3187	0.33	+4.9
3,779,287	-		Sama_3187	0.33	-1.5
3,779,287	-		Sama_3187	0.33	+6.4
3,779,612	+		Sama_3187	0.59	-1.0
3,779,613	-		Sama_3187	0.59	-0.5
3,779,613	-		Sama_3187	0.59	+3.8
3,779,616	+		Sama_3187	0.59	+0.9
3,779,616	+		Sama_3187	0.59	-0.5
3,779,616	+		Sama_3187	0.59	+2.3
3,779,616	+		Sama_3187	0.59	+1.6
3,779,616	+		Sama_3187	0.59	+2.4
3,779,616	+		Sama_3187	0.59	-0.5
3,779,616	+		Sama_3187	0.59	-0.7
3,779,616	+		Sama_3187	0.59	+0.0
3,779,616	+		Sama_3187	0.59	+0.6
3,779,616	+		Sama_3187	0.59	+1.5
3,779,617	-		Sama_3187	0.59	+3.5
3,779,617	-		Sama_3187	0.59	+0.0
3,779,617	-		Sama_3187	0.59	+4.3
3,779,617	-		Sama_3187	0.59	+5.4
3,779,617	-		Sama_3187	0.59	+5.2
3,779,617	-		Sama_3187	0.59	+5.7
3,779,632	-		Sama_3187	0.60	+4.7
3,779,648	+		Sama_3187	0.61	+0.5
3,779,648	+		Sama_3187	0.61	-0.9
3,779,648	+		Sama_3187	0.61	+0.9
3,779,648	+		Sama_3187	0.61	+0.0
3,779,648	+		Sama_3187	0.61	-1.2
3,779,648	+		Sama_3187	0.61	+0.8
3,779,649	-		Sama_3187	0.62	+1.5
3,779,649	-		Sama_3187	0.62	+1.3
3,779,649	-		Sama_3187	0.62	+3.9
3,779,649	-		Sama_3187	0.62	+3.1
3,779,649	-		Sama_3187	0.62	+3.6
3,779,649	-		Sama_3187	0.62	+0.8
3,779,649	-		Sama_3187	0.62	-3.1
3,779,649	-		Sama_3187	0.62	+4.3
3,779,649	-		Sama_3187	0.62	+3.3
3,779,656	+		Sama_3187	0.62	-1.1
3,779,656	+		Sama_3187	0.62	+1.0
3,779,656	+		Sama_3187	0.62	+0.4
3,779,656	+		Sama_3187	0.62	-2.5
3,779,657	-		Sama_3187	0.62	+3.7
3,779,657	-		Sama_3187	0.62	+1.9
3,779,657	-		Sama_3187	0.62	+3.4
3,779,657	-		Sama_3187	0.62	+1.3
3,779,669	+		Sama_3187	0.63	+2.4
3,779,670	-		Sama_3187	0.63	+2.7
3,779,731	+		Sama_3187	0.68	-1.0
3,779,731	+		Sama_3187	0.68	+0.2
3,779,731	+		Sama_3187	0.68	-0.1
3,779,731	+		Sama_3187	0.68	-1.3
3,779,731	+		Sama_3187	0.68	+2.1
3,779,731	+		Sama_3187	0.68	-2.3
3,779,731	+		Sama_3187	0.68	+4.0
3,779,731	+		Sama_3187	0.68	+1.0
3,779,731	+		Sama_3187	0.68	+0.8
3,779,732	-		Sama_3187	0.68	+4.6
3,779,732	-		Sama_3187	0.68	-1.4
3,779,732	-		Sama_3187	0.68	+2.5
3,779,732	-		Sama_3187	0.68	+3.7
3,779,732	-		Sama_3187	0.68	+2.4
3,779,732	-		Sama_3187	0.68	+1.3
3,779,744	+		Sama_3187	0.69	-1.4
3,779,744	+		Sama_3187	0.69	+1.0
3,779,745	-		Sama_3187	0.69	+2.7
3,779,746	+		Sama_3187	0.69	+1.0
3,779,746	+		Sama_3187	0.69	-0.2
3,779,746	+		Sama_3187	0.69	-0.9
3,779,747	-		Sama_3187	0.69	+3.4
3,779,747	-		Sama_3187	0.69	+4.7
3,779,747	-		Sama_3187	0.69	+3.3
3,779,747	-		Sama_3187	0.69	+0.3
3,779,747	-		Sama_3187	0.69	+4.8
3,779,835	+		Sama_3187	0.76	-0.7
3,779,836	-		Sama_3187	0.76	+3.2
3,779,837	+		Sama_3187	0.76	-1.0
3,779,837	+		Sama_3187	0.76	+3.0
3,779,837	+		Sama_3187	0.76	+1.0
3,779,837	+		Sama_3187	0.76	+0.9
3,779,837	+		Sama_3187	0.76	-1.8
3,779,838	-		Sama_3187	0.76	+3.1
3,779,838	-		Sama_3187	0.76	+3.0
3,779,838	-		Sama_3187	0.76	-2.0
3,779,838	-		Sama_3187	0.76	+2.7
3,779,838	-		Sama_3187	0.76	+3.8
3,779,838	-		Sama_3187	0.76	+1.1
3,779,866	+		Sama_3187	0.79	-0.2
3,779,866	+		Sama_3187	0.79	-1.9
3,779,866	+		Sama_3187	0.79	+2.4
3,779,866	+		Sama_3187	0.79	+2.0
3,779,866	+		Sama_3187	0.79	-2.0
3,779,867	-		Sama_3187	0.79	+2.9
3,779,867	-		Sama_3187	0.79	+2.4
3,779,867	-		Sama_3187	0.79	+1.9
3,779,867	-		Sama_3187	0.79	-0.8
3,779,867	-		Sama_3187	0.79	-1.0
3,779,868	+		Sama_3187	0.79	+3.8
3,779,868	+		Sama_3187	0.79	-2.3
3,779,868	+		Sama_3187	0.79	+3.3
3,779,868	+		Sama_3187	0.79	-1.3
3,779,897	+		Sama_3187	0.81	+0.5
3,779,898	-		Sama_3187	0.81	+0.5
3,779,946	+		Sama_3187	0.85	+1.7
3,779,946	+		Sama_3187	0.85	+0.9
3,779,947	-		Sama_3187	0.85	+3.1
3,779,947	-		Sama_3187	0.85	+0.9
3,779,947	-		Sama_3187	0.85	+1.1
3,779,990	+		Sama_3187	0.88	+0.7
3,779,990	+		Sama_3187	0.88	+0.9
3,779,990	+		Sama_3187	0.88	-0.5
3,779,990	+		Sama_3187	0.88	+1.6
3,779,990	+		Sama_3187	0.88	-2.0
3,779,991	-		Sama_3187	0.88	+0.0
3,779,991	-		Sama_3187	0.88	+0.7
3,779,991	-		Sama_3187	0.88	+1.1
3,779,991	-		Sama_3187	0.88	+2.5
3,779,992	+		Sama_3187	0.89	-3.7
3,779,992	+		Sama_3187	0.89	-0.5
3,779,992	+		Sama_3187	0.89	-1.9
3,779,992	+		Sama_3187	0.89	+0.5
3,779,993	-		Sama_3187	0.89	-0.3
3,779,993	-		Sama_3187	0.89	+0.5
3,779,993	-		Sama_3187	0.89	+0.0
3,779,993	-		Sama_3187	0.89	+2.5
3,779,993	-		Sama_3187	0.89	+2.0
3,780,115	+				-2.7
3,780,115	+				+0.6
3,780,115	+				+0.7
3,780,115	+				+0.5
3,780,115	+				+1.2
3,780,115	+				+2.7
3,780,116	-				-2.0
3,780,137	+				+2.1
3,780,138	-				+0.6
3,780,138	-				+0.4
3,780,157	-				+2.6
3,780,169	+				+0.5
3,780,169	+				+0.6
3,780,170	-				+1.8
3,780,175	-				+0.9
3,780,175	-				-0.3
3,780,229	+				+1.0
3,780,230	-				+2.8
3,780,230	-				+2.5
3,780,309	+				-2.0
3,780,309	+				+0.9
3,780,310	-				+2.2
3,780,310	-				+1.6
3,780,310	-				-0.1
3,780,310	-				-0.8
3,780,310	-				+3.9
3,780,311	+				+0.3
3,780,311	+				+0.8
3,780,311	+				+0.1
3,780,311	+				-1.3
3,780,311	+				-2.5
3,780,311	+				+2.9
3,780,312	-				+1.5
3,780,312	-				+3.7
3,780,312	-				+1.6
3,780,312	-				+0.3
3,780,312	-				+3.8
3,780,312	-				+2.8
3,780,312	-				+4.1
3,780,312	-				-1.5
3,780,312	-				+2.3
3,780,367	-				+3.3
3,780,411	+				-1.5
3,780,412	-				+2.0
3,780,494	+				+0.2
3,780,494	+				-2.0
3,780,495	-				+2.3
3,780,495	-				+4.0
3,780,495	-				-1.7
3,780,506	+				-1.5
3,780,507	-				+2.9
3,780,507	-				-1.4
3,780,537	+				-0.3
3,780,538	-				+1.8
3,780,591	+		Sama_3188	0.10	-2.0
3,780,620	+		Sama_3188	0.11	+0.5
3,780,620	+		Sama_3188	0.11	-2.1
3,780,620	+		Sama_3188	0.11	-1.0
3,780,621	-		Sama_3188	0.11	+3.7
3,780,621	-		Sama_3188	0.11	+2.9
3,780,621	-		Sama_3188	0.11	+1.2
3,780,621	-		Sama_3188	0.11	+1.0
3,780,621	-		Sama_3188	0.11	-1.0
3,780,621	-		Sama_3188	0.11	+4.6
3,780,621	-		Sama_3188	0.11	+7.5
3,780,635	+		Sama_3188	0.12	-2.3
3,780,635	+		Sama_3188	0.12	-3.1
3,780,635	+		Sama_3188	0.12	+1.6
3,780,635	+		Sama_3188	0.12	+0.3
3,780,635	+		Sama_3188	0.12	-2.7
3,780,635	+		Sama_3188	0.12	-0.6
3,780,635	+		Sama_3188	0.12	-0.1
3,780,635	+		Sama_3188	0.12	-0.3
3,780,636	-		Sama_3188	0.12	+0.6
3,780,636	-		Sama_3188	0.12	+1.0
3,780,636	-		Sama_3188	0.12	+1.0
3,780,636	-		Sama_3188	0.12	+1.7
3,780,636	-		Sama_3188	0.12	+1.1
3,780,636	-		Sama_3188	0.12	+2.5
3,780,636	-		Sama_3188	0.12	+3.2
3,780,636	-		Sama_3188	0.12	-0.7
3,780,636	-		Sama_3188	0.12	+3.5
3,780,636	-		Sama_3188	0.12	+1.7
3,780,719	+		Sama_3188	0.14	+0.2
3,780,719	+		Sama_3188	0.14	+1.4
3,780,720	-		Sama_3188	0.14	+2.7
3,780,720	-		Sama_3188	0.14	+2.0
3,780,735	+		Sama_3188	0.15	-0.5
3,780,735	+		Sama_3188	0.15	-1.7
3,780,736	-		Sama_3188	0.15	-2.5
3,780,736	-		Sama_3188	0.15	+1.2
3,780,736	-		Sama_3188	0.15	+1.9
3,780,736	-		Sama_3188	0.15	+2.3
3,780,736	-		Sama_3188	0.15	+2.7
3,780,736	-		Sama_3188	0.15	-0.3
3,780,819	+		Sama_3188	0.17	-0.8
3,780,819	+		Sama_3188	0.17	-0.5
3,780,820	-		Sama_3188	0.17	+0.1
3,780,820	-		Sama_3188	0.17	+1.5
3,780,820	-		Sama_3188	0.17	-0.9
3,780,820	-		Sama_3188	0.17	-1.8
3,780,822	-		Sama_3188	0.17	+2.4
3,780,857	+		Sama_3188	0.19	+0.0
3,780,857	+		Sama_3188	0.19	-1.3
3,780,857	+		Sama_3188	0.19	-0.3
3,780,857	+		Sama_3188	0.19	-1.0
3,780,857	+		Sama_3188	0.19	-1.6
3,780,857	+		Sama_3188	0.19	+1.6
3,780,857	+		Sama_3188	0.19	+0.1
3,780,857	+		Sama_3188	0.19	-0.3
3,780,857	+		Sama_3188	0.19	-2.3
3,780,858	-		Sama_3188	0.19	+0.7
3,780,858	-		Sama_3188	0.19	+1.1
3,780,858	-		Sama_3188	0.19	+0.1
3,780,858	-		Sama_3188	0.19	+0.1
3,780,858	-		Sama_3188	0.19	-1.3
3,780,858	-		Sama_3188	0.19	+0.2
3,780,943	-		Sama_3188	0.21	+1.7
3,780,967	+		Sama_3188	0.22	+1.1
3,780,967	+		Sama_3188	0.22	-1.8
3,780,968	-		Sama_3188	0.22	+2.8
3,780,968	-		Sama_3188	0.22	+2.1
3,780,968	-		Sama_3188	0.22	-2.4
3,780,968	-		Sama_3188	0.22	+2.8
3,780,968	-		Sama_3188	0.22	+2.0
3,780,976	+		Sama_3188	0.22	-2.2
3,780,977	-		Sama_3188	0.22	+2.1
3,780,991	+		Sama_3188	0.23	+0.6
3,780,992	-		Sama_3188	0.23	+0.7
3,781,031	-		Sama_3188	0.24	-1.5
3,781,083	-		Sama_3188	0.26	+1.7
3,781,083	-		Sama_3188	0.26	-1.9
3,781,126	+		Sama_3188	0.27	+1.1
3,781,126	+		Sama_3188	0.27	-0.9
3,781,126	+		Sama_3188	0.27	-0.5
3,781,126	+		Sama_3188	0.27	-1.5
3,781,126	+		Sama_3188	0.27	-0.9
3,781,126	+		Sama_3188	0.27	+2.3
3,781,127	-		Sama_3188	0.27	+0.6
3,781,127	-		Sama_3188	0.27	+3.1
3,781,127	-		Sama_3188	0.27	+3.7
3,781,127	-		Sama_3188	0.27	+2.7
3,781,127	-		Sama_3188	0.27	+1.0
3,781,127	-		Sama_3188	0.27	+0.2
3,781,127	-		Sama_3188	0.27	+0.1
3,781,127	-		Sama_3188	0.27	+4.3
3,781,127	-		Sama_3188	0.27	-1.6