Strain Fitness in Shewanella amazonensis SB2B around Sama_3176

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
3,763,528	+				+1.0
3,763,533	+				+1.2
3,763,533	+				-1.0
3,763,533	+				-0.3
3,763,533	+				-1.4
3,763,533	+				-1.8
3,763,534	-				+3.0
3,763,546	+				-0.7
3,763,546	+				+1.2
3,763,547	-				-1.4
3,763,547	-				-1.3
3,763,547	-				-2.1
3,763,547	-				+0.0
3,763,547	-				-1.4
3,763,547	-				-0.7
3,763,561	+				+0.9
3,763,568	+				+2.0
3,763,568	+				-1.5
3,763,569	-				-1.8
3,763,686	+		Sama_3175	0.15	-0.5
3,763,765	+		Sama_3175	0.23	+0.0
3,763,776	-		Sama_3175	0.24	-0.7
3,763,784	+		Sama_3175	0.25	+2.2
3,763,785	-		Sama_3175	0.25	-1.9
3,763,785	-		Sama_3175	0.25	-1.0
3,763,785	-		Sama_3175	0.25	-2.3
3,763,889	+		Sama_3175	0.36	+1.1
3,763,890	-		Sama_3175	0.36	-0.5
3,763,890	-		Sama_3175	0.36	+1.3
3,763,895	+		Sama_3175	0.36	-2.0
3,764,002	+		Sama_3175	0.47	+0.7
3,764,033	+		Sama_3175	0.50	+0.4
3,764,033	+		Sama_3175	0.50	-1.3
3,764,033	+		Sama_3175	0.50	+0.2
3,764,034	-		Sama_3175	0.50	+0.4
3,764,034	-		Sama_3175	0.50	+0.0
3,764,035	+		Sama_3175	0.51	-0.3
3,764,036	-		Sama_3175	0.51	-0.5
3,764,036	-		Sama_3175	0.51	-1.0
3,764,170	+		Sama_3175	0.64	-0.3
3,764,171	-		Sama_3175	0.64	-2.6
3,764,171	-		Sama_3175	0.64	-0.4
3,764,171	-		Sama_3175	0.64	-3.3
3,764,191	+		Sama_3175	0.66	+0.0
3,764,191	+		Sama_3175	0.66	+0.7
3,764,191	+		Sama_3175	0.66	-1.3
3,764,191	+		Sama_3175	0.66	+0.6
3,764,191	+		Sama_3175	0.66	-1.7
3,764,192	-		Sama_3175	0.66	+0.3
3,764,192	-		Sama_3175	0.66	+1.9
3,764,205	+		Sama_3175	0.68	-1.3
3,764,205	+		Sama_3175	0.68	+3.2
3,764,206	-		Sama_3175	0.68	-0.4
3,764,206	-		Sama_3175	0.68	+0.2
3,764,232	+		Sama_3175	0.71	+1.3
3,764,232	+		Sama_3175	0.71	+0.9
3,764,233	-		Sama_3175	0.71	+0.8
3,764,233	-		Sama_3175	0.71	+2.7
3,764,233	-		Sama_3175	0.71	+0.1
3,764,233	-		Sama_3175	0.71	-2.1
3,764,233	-		Sama_3175	0.71	+1.5
3,764,233	-		Sama_3175	0.71	+0.6
3,764,239	+		Sama_3175	0.71	-2.0
3,764,240	-		Sama_3175	0.71	-3.1
3,764,240	-		Sama_3175	0.71	+0.3
3,764,240	-		Sama_3175	0.71	-1.3
3,764,240	-		Sama_3175	0.71	+0.3
3,764,240	-		Sama_3175	0.71	-1.3
3,764,240	-		Sama_3175	0.71	-1.0
3,764,240	-		Sama_3175	0.71	-1.1
3,764,240	-		Sama_3175	0.71	-0.5
3,764,243	+		Sama_3175	0.72	-0.8
3,764,372	+		Sama_3175	0.85	+0.5
3,764,447	+				-2.8
3,764,447	+				+0.5
3,764,455	+				-0.8
3,764,456	-				+1.4
3,764,456	-				-1.1
3,764,456	-				-1.6
3,764,480	+				+0.0
3,764,480	+				-3.2
3,764,480	+				+0.0
3,764,480	+				-0.9
3,764,480	+				+2.6
3,764,481	-				-0.8
3,764,491	+				-1.7
3,764,491	+				-0.5
3,764,491	+				-0.3
3,764,492	-				+0.7
3,764,501	+				-1.1
3,764,501	+				-0.5
3,764,501	+				+3.6
3,764,502	-				-1.3
3,764,502	-				+1.0
3,764,513	+				-1.2
3,764,514	-				-0.7
3,764,514	-				+2.0
3,764,514	-				+1.4
3,764,514	-				-1.2
3,764,514	-				-1.7
3,764,514	-				-0.3
3,764,514	-				+1.8
3,764,522	+				+0.1
3,764,522	+				+0.2
3,764,523	-				+1.0
3,764,523	-				+0.6
3,764,523	-				-1.9
3,764,531	-				-0.8
3,764,551	+				+0.0
3,764,556	+				-0.1
3,764,557	-				-0.0
3,764,595	+		Sama_3176	0.12	+0.6
3,764,596	-		Sama_3176	0.13	-0.5
3,764,596	-		Sama_3176	0.13	-0.6
3,764,678	+		Sama_3176	0.27	+0.4
3,764,678	+		Sama_3176	0.27	-1.6
3,764,678	+		Sama_3176	0.27	-1.2
3,764,678	+		Sama_3176	0.27	-0.7
3,764,678	+		Sama_3176	0.27	-1.4
3,764,678	+		Sama_3176	0.27	-0.4
3,764,678	+		Sama_3176	0.27	-1.2
3,764,678	+		Sama_3176	0.27	+0.0
3,764,679	-		Sama_3176	0.27	-2.9
3,764,679	-		Sama_3176	0.27	-1.0
3,764,679	-		Sama_3176	0.27	-0.9
3,764,679	-		Sama_3176	0.27	+0.4
3,764,679	-		Sama_3176	0.27	-0.4
3,764,679	-		Sama_3176	0.27	-2.3
3,764,679	-		Sama_3176	0.27	-2.0
3,764,679	-		Sama_3176	0.27	+1.0
3,764,679	-		Sama_3176	0.27	-1.2
3,764,679	-		Sama_3176	0.27	+0.5
3,764,767	+		Sama_3176	0.43	-0.3
3,764,767	+		Sama_3176	0.43	+0.8
3,764,768	-		Sama_3176	0.43	-0.3
3,764,768	-		Sama_3176	0.43	+0.5
3,764,768	-		Sama_3176	0.43	-2.9
3,764,768	-		Sama_3176	0.43	+1.3
3,764,768	-		Sama_3176	0.43	-0.8
3,764,781	+		Sama_3176	0.45	-3.1
3,764,802	+		Sama_3176	0.49	-1.8
3,764,802	+		Sama_3176	0.49	-2.2
3,764,802	+		Sama_3176	0.49	+0.3
3,764,802	+		Sama_3176	0.49	-0.5
3,764,803	-		Sama_3176	0.49	+0.5
3,764,803	-		Sama_3176	0.49	-2.1
3,764,803	-		Sama_3176	0.49	-0.3
3,764,803	-		Sama_3176	0.49	-1.7
3,764,803	-		Sama_3176	0.49	-2.2
3,764,803	-		Sama_3176	0.49	-0.2
3,764,803	-		Sama_3176	0.49	-2.1
3,764,803	-		Sama_3176	0.49	-1.5
3,764,859	+		Sama_3176	0.59	-0.8
3,764,860	-		Sama_3176	0.59	-2.0
3,764,860	-		Sama_3176	0.59	-1.4
3,764,928	+		Sama_3176	0.71	-1.0
3,764,990	+		Sama_3176	0.82	+0.2
3,765,002	+		Sama_3176	0.84	+0.6
3,765,003	-		Sama_3176	0.84	+1.5
3,765,003	-		Sama_3176	0.84	-1.9
3,765,010	+		Sama_3176	0.86	-1.6
3,765,011	-		Sama_3176	0.86	-1.4
3,765,031	+		Sama_3176	0.89	-3.0
3,765,031	+		Sama_3176	0.89	-0.3
3,765,032	-		Sama_3176	0.89	-0.7
3,765,074	+				-2.5
3,765,074	+				+0.0
3,765,074	+				+1.1
3,765,074	+				+1.2
3,765,074	+				-0.5
3,765,074	+				-0.2
3,765,074	+				-0.2
3,765,074	+				+0.5
3,765,074	+				+0.2
3,765,074	+				+2.3
3,765,075	-				-0.1
3,765,075	-				-0.3
3,765,075	-				-0.2
3,765,075	-				+0.2
3,765,075	-				-0.4
3,765,075	-				-0.3
3,765,075	-				+0.9
3,765,075	-				+0.5
3,765,078	+				+0.9
3,765,078	+				-0.5
3,765,078	+				-1.3
3,765,079	-				-1.0
3,765,091	+				-0.2
3,765,091	+				+0.9
3,765,092	-				+0.2
3,765,106	+				-0.5
3,765,168	-				+0.7
3,765,247	+				-1.9
3,765,247	+				-2.0
3,765,247	+				-1.4
3,765,247	+				+1.0
3,765,247	+				+0.0
3,765,247	+				+1.2
3,765,248	-				-0.3
3,765,248	-				-0.6
3,765,248	-				-0.5
3,765,248	-				+0.1
3,765,248	-				+0.0
3,765,248	-				-2.4
3,765,248	-				-2.0
3,765,248	-				-2.1
3,765,248	-				-2.5
3,765,248	-				-1.1
3,765,248	-				-0.5
3,765,261	-				-1.7
3,765,278	+				+0.6
3,765,278	+				-1.3
3,765,279	-				+0.8
3,765,321	-				+0.2
3,765,321	-				-0.4
3,765,329	+				+2.6
3,765,329	+				-3.0
3,765,329	+				-0.2
3,765,329	+				+0.6
3,765,329	+				-2.0
3,765,329	+				-1.4
3,765,330	-				+1.2
3,765,330	-				-0.5
3,765,330	-				-1.3
3,765,413	+		Sama_3177	0.13	+1.5
3,765,413	+		Sama_3177	0.13	-0.3
3,765,413	+		Sama_3177	0.13	+0.5
3,765,419	+		Sama_3177	0.14	-1.4
3,765,419	+		Sama_3177	0.14	-1.0
3,765,419	+		Sama_3177	0.14	-0.0
3,765,419	+		Sama_3177	0.14	-1.4
3,765,455	+		Sama_3177	0.15	-0.4
3,765,456	-		Sama_3177	0.15	+1.1
3,765,456	-		Sama_3177	0.15	+0.6
3,765,469	+		Sama_3177	0.16	+0.5
3,765,469	+		Sama_3177	0.16	-1.7
3,765,470	-		Sama_3177	0.16	-0.4
3,765,470	-		Sama_3177	0.16	-4.0
3,765,489	+		Sama_3177	0.17	-3.4
3,765,489	+		Sama_3177	0.17	+0.9
3,765,489	+		Sama_3177	0.17	+1.0
3,765,490	-		Sama_3177	0.17	+1.3
3,765,505	+		Sama_3177	0.18	-1.0
3,765,506	-		Sama_3177	0.18	-1.0
3,765,561	+		Sama_3177	0.20	-0.2
3,765,561	+		Sama_3177	0.20	+0.1
3,765,561	+		Sama_3177	0.20	+1.5
3,765,561	+		Sama_3177	0.20	-1.3
3,765,561	+		Sama_3177	0.20	-0.8
3,765,562	-		Sama_3177	0.20	-2.7
3,765,562	-		Sama_3177	0.20	-0.5
3,765,562	-		Sama_3177	0.20	+1.7
3,765,601	+		Sama_3177	0.22	+0.5
3,765,601	+		Sama_3177	0.22	-2.2
3,765,602	-		Sama_3177	0.22	-0.3
3,765,694	+		Sama_3177	0.26	-1.3
3,765,695	-		Sama_3177	0.26	+0.7
3,765,695	-		Sama_3177	0.26	-0.3
3,765,787	+		Sama_3177	0.30	-0.5
3,765,787	+		Sama_3177	0.30	-1.5
3,765,788	-		Sama_3177	0.30	-0.7
3,765,790	+		Sama_3177	0.30	-0.3
3,765,790	+		Sama_3177	0.30	-0.2
3,765,790	+		Sama_3177	0.30	-2.1
3,765,790	+		Sama_3177	0.30	-2.0
3,765,790	+		Sama_3177	0.30	-0.5
3,765,790	+		Sama_3177	0.30	+0.0
3,765,790	+		Sama_3177	0.30	-2.2
3,765,790	+		Sama_3177	0.30	-0.3
3,765,790	+		Sama_3177	0.30	-0.1
3,765,790	+		Sama_3177	0.30	+2.1
3,765,791	-		Sama_3177	0.30	-0.1
3,765,791	-		Sama_3177	0.30	+0.7
3,765,791	-		Sama_3177	0.30	-1.8
3,765,791	-		Sama_3177	0.30	+1.1
3,765,791	-		Sama_3177	0.30	+2.0
3,765,791	-		Sama_3177	0.30	-0.1
3,765,791	-		Sama_3177	0.30	-2.0
3,765,791	-		Sama_3177	0.30	-1.6
3,765,791	-		Sama_3177	0.30	-0.0
3,765,791	-		Sama_3177	0.30	+0.8
3,765,791	-		Sama_3177	0.30	+1.1
3,765,791	-		Sama_3177	0.30	+1.1
3,765,809	+		Sama_3177	0.31	-0.5
3,765,809	+		Sama_3177	0.31	-0.8
3,765,810	-		Sama_3177	0.31	-1.0
3,765,810	-		Sama_3177	0.31	-0.3
3,765,883	+		Sama_3177	0.34	+0.6
3,765,887	-		Sama_3177	0.34	+1.9
3,765,937	+		Sama_3177	0.36	-1.5
3,765,937	+		Sama_3177	0.36	-0.3
3,765,937	+		Sama_3177	0.36	-0.5
3,765,937	+		Sama_3177	0.36	-1.7
3,765,937	+		Sama_3177	0.36	-0.1
3,765,938	-		Sama_3177	0.36	+1.2
3,765,986	+		Sama_3177	0.39	-0.5
3,765,986	+		Sama_3177	0.39	+0.4
3,765,987	-		Sama_3177	0.39	-0.8
3,765,988	+		Sama_3177	0.39	+1.0
3,765,988	+		Sama_3177	0.39	-1.9
3,765,988	+		Sama_3177	0.39	+1.7
3,765,988	+		Sama_3177	0.39	+1.1
3,765,988	+		Sama_3177	0.39	-2.4
3,765,988	+		Sama_3177	0.39	+1.2
3,765,988	+		Sama_3177	0.39	-1.9
3,765,988	+		Sama_3177	0.39	-1.6
3,765,988	+		Sama_3177	0.39	-0.3
3,765,988	+		Sama_3177	0.39	-0.3
3,765,988	+		Sama_3177	0.39	+0.2
3,765,988	+		Sama_3177	0.39	+0.6
3,765,988	+		Sama_3177	0.39	-1.1
3,765,988	+		Sama_3177	0.39	-0.2
3,765,988	+		Sama_3177	0.39	-1.8
3,765,988	+		Sama_3177	0.39	-1.4
3,765,988	+		Sama_3177	0.39	+1.3
3,765,988	+		Sama_3177	0.39	-0.1
3,765,988	+		Sama_3177	0.39	+1.5
3,765,988	+		Sama_3177	0.39	-2.0
3,765,988	+		Sama_3177	0.39	-1.9
3,765,988	+		Sama_3177	0.39	+0.6
3,765,988	+		Sama_3177	0.39	-0.2
3,765,988	+		Sama_3177	0.39	+1.6
3,765,988	+		Sama_3177	0.39	-0.5
3,765,988	+		Sama_3177	0.39	+1.0
3,765,989	-		Sama_3177	0.39	-2.5
3,765,989	-		Sama_3177	0.39	-1.4
3,765,989	-		Sama_3177	0.39	+1.5
3,765,989	-		Sama_3177	0.39	-0.2
3,765,989	-		Sama_3177	0.39	-0.2
3,765,989	-		Sama_3177	0.39	-2.9
3,765,989	-		Sama_3177	0.39	-1.1
3,765,989	-		Sama_3177	0.39	+0.1
3,765,989	-		Sama_3177	0.39	+0.9