Strain Fitness in Shewanella amazonensis SB2B around Sama_3162

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
3,747,894	-		Sama_3161	0.46	-1.8
3,747,894	-		Sama_3161	0.46	+1.0
3,747,919	+		Sama_3161	0.48	-0.3
3,747,920	-		Sama_3161	0.48	+0.2
3,747,920	-		Sama_3161	0.48	+0.4
3,747,920	-		Sama_3161	0.48	+0.2
3,747,958	+		Sama_3161	0.50	-3.1
3,747,958	+		Sama_3161	0.50	-0.8
3,747,958	+		Sama_3161	0.50	+0.2
3,747,958	+		Sama_3161	0.50	+0.9
3,747,958	+		Sama_3161	0.50	-2.1
3,747,958	+		Sama_3161	0.50	-1.8
3,747,958	+		Sama_3161	0.50	+0.4
3,747,958	+		Sama_3161	0.50	+1.2
3,747,959	-		Sama_3161	0.50	+0.9
3,747,959	-		Sama_3161	0.50	+1.4
3,747,991	+		Sama_3161	0.52	-1.2
3,747,992	-		Sama_3161	0.52	+0.6
3,747,992	-		Sama_3161	0.52	-1.0
3,747,992	-		Sama_3161	0.52	+2.0
3,747,992	-		Sama_3161	0.52	-0.6
3,747,992	-		Sama_3161	0.52	+0.6
3,747,992	-		Sama_3161	0.52	-1.2
3,747,992	-		Sama_3161	0.52	-0.2
3,747,992	-		Sama_3161	0.52	+1.3
3,747,992	-		Sama_3161	0.52	+1.4
3,747,992	-		Sama_3161	0.52	-0.5
3,747,992	-		Sama_3161	0.52	+2.0
3,747,992	-		Sama_3161	0.52	+1.6
3,747,992	-		Sama_3161	0.52	-1.4
3,747,998	+		Sama_3161	0.52	-0.3
3,747,998	+		Sama_3161	0.52	+0.5
3,747,999	-		Sama_3161	0.53	-2.0
3,748,015	+		Sama_3161	0.53	-0.1
3,748,015	+		Sama_3161	0.53	+0.9
3,748,015	+		Sama_3161	0.53	-1.0
3,748,015	+		Sama_3161	0.53	+1.3
3,748,016	-		Sama_3161	0.53	-0.1
3,748,016	-		Sama_3161	0.53	-0.8
3,748,016	-		Sama_3161	0.53	+1.0
3,748,016	-		Sama_3161	0.53	+2.3
3,748,016	-		Sama_3161	0.53	+2.7
3,748,016	-		Sama_3161	0.53	+1.0
3,748,016	-		Sama_3161	0.53	+3.3
3,748,016	-		Sama_3161	0.53	+0.0
3,748,016	-		Sama_3161	0.53	-1.0
3,748,016	-		Sama_3161	0.53	+0.2
3,748,017	+		Sama_3161	0.54	-0.1
3,748,018	-		Sama_3161	0.54	+0.7
3,748,086	-		Sama_3161	0.58	-3.1
3,748,086	-		Sama_3161	0.58	+0.7
3,748,086	-		Sama_3161	0.58	+1.0
3,748,093	-		Sama_3161	0.58	+0.8
3,748,143	+		Sama_3161	0.61	-1.0
3,748,143	+		Sama_3161	0.61	+0.3
3,748,267	-		Sama_3161	0.68	-0.3
3,748,274	+		Sama_3161	0.68	-0.7
3,748,298	+		Sama_3161	0.70	+1.7
3,748,299	-		Sama_3161	0.70	-2.1
3,748,311	-		Sama_3161	0.71	-0.1
3,748,311	-		Sama_3161	0.71	-0.3
3,748,311	-		Sama_3161	0.71	+0.6
3,748,311	-		Sama_3161	0.71	+0.3
3,748,311	-		Sama_3161	0.71	-0.2
3,748,319	+		Sama_3161	0.71	-0.9
3,748,366	+		Sama_3161	0.74	+0.3
3,748,473	-		Sama_3161	0.80	-0.2
3,748,473	-		Sama_3161	0.80	-0.7
3,748,511	+		Sama_3161	0.82	-1.4
3,748,539	+		Sama_3161	0.84	+1.6
3,748,539	+		Sama_3161	0.84	+1.3
3,748,539	+		Sama_3161	0.84	+1.4
3,748,539	+		Sama_3161	0.84	-0.1
3,748,539	+		Sama_3161	0.84	-0.8
3,748,539	+		Sama_3161	0.84	-1.8
3,748,539	+		Sama_3161	0.84	-1.8
3,748,539	+		Sama_3161	0.84	-0.9
3,748,539	+		Sama_3161	0.84	+0.6
3,748,540	-		Sama_3161	0.84	+1.4
3,748,540	-		Sama_3161	0.84	-1.0
3,748,540	-		Sama_3161	0.84	+0.0
3,748,540	-		Sama_3161	0.84	+1.4
3,748,540	-		Sama_3161	0.84	-2.3
3,748,540	-		Sama_3161	0.84	-0.3
3,748,540	-		Sama_3161	0.84	-2.8
3,748,540	-		Sama_3161	0.84	+1.4
3,748,540	-		Sama_3161	0.84	+0.8
3,748,540	-		Sama_3161	0.84	-2.1
3,748,540	-		Sama_3161	0.84	-0.6
3,748,540	-		Sama_3161	0.84	+2.3
3,748,578	+		Sama_3161	0.86	-1.9
3,748,578	+		Sama_3161	0.86	-1.9
3,748,579	-		Sama_3161	0.86	+1.1
3,748,579	-		Sama_3161	0.86	+2.0
3,748,579	-		Sama_3161	0.86	-0.7
3,748,595	+		Sama_3161	0.87	-0.6
3,748,596	-		Sama_3161	0.87	+1.1
3,748,658	+				-1.9
3,748,658	+				+2.0
3,748,658	+				-0.8
3,748,658	+				-0.3
3,748,658	+				-0.2
3,748,658	+				-0.1
3,748,658	+				+1.7
3,748,658	+				+1.2
3,748,658	+				-1.9
3,748,658	+				-0.4
3,748,658	+				+0.0
3,748,658	+				+1.8
3,748,659	-				-0.1
3,748,659	-				+0.0
3,748,659	-				+1.8
3,748,659	-				+1.7
3,748,659	-				-1.3
3,748,659	-				+1.0
3,748,659	-				-0.1
3,748,659	-				+0.6
3,748,659	-				+0.4
3,748,659	-				+1.7
3,748,659	-				+1.6
3,748,659	-				+0.2
3,748,659	-				+0.4
3,748,660	+				+0.7
3,748,660	+				+0.4
3,748,660	+				+0.0
3,748,660	+				+0.4
3,748,660	+				-1.1
3,748,660	+				-3.2
3,748,660	+				-2.7
3,748,660	+				-2.1
3,748,660	+				-1.0
3,748,661	-				-0.0
3,748,661	-				+2.4
3,748,661	-				-1.7
3,748,661	-				-1.3
3,748,661	-				-0.1
3,748,661	-				+3.0
3,748,661	-				-0.4
3,748,661	-				-0.5
3,748,720	+				-0.8
3,748,721	-				-0.0
3,748,721	-				+0.8
3,748,721	-				+0.2
3,748,773	+				-2.6
3,748,773	+				+0.1
3,748,774	-				+0.4
3,748,774	-				+0.7
3,748,774	-				+0.0
3,748,774	-				-1.1
3,748,774	-				-0.2
3,748,826	-				+0.8
3,748,834	+				-1.7
3,748,876	-		Sama_3162	0.10	+2.4
3,748,882	-		Sama_3162	0.12	-1.1
3,748,882	-		Sama_3162	0.12	+1.3
3,748,882	-		Sama_3162	0.12	+1.4
3,748,882	-		Sama_3162	0.12	-1.0
3,748,903	+		Sama_3162	0.17	-0.1
3,748,903	+		Sama_3162	0.17	+0.8
3,748,903	+		Sama_3162	0.17	-2.6
3,748,903	+		Sama_3162	0.17	+0.8
3,748,906	-		Sama_3162	0.17	+2.0
3,748,909	-		Sama_3162	0.18	+3.7
3,748,922	+		Sama_3162	0.21	-2.7
3,748,923	-		Sama_3162	0.21	+1.2
3,748,941	+		Sama_3162	0.26	+2.8
3,748,942	-		Sama_3162	0.26	+3.2
3,748,956	+		Sama_3162	0.29	+0.4
3,748,956	+		Sama_3162	0.29	-1.8
3,748,956	+		Sama_3162	0.29	+1.8
3,748,956	+		Sama_3162	0.29	+1.0
3,748,957	-		Sama_3162	0.29	+3.5
3,748,957	-		Sama_3162	0.29	+6.0
3,748,957	-		Sama_3162	0.29	+4.6
3,748,957	-		Sama_3162	0.29	+4.1
3,748,957	-		Sama_3162	0.29	+4.1
3,748,977	+		Sama_3162	0.34	+0.0
3,748,977	+		Sama_3162	0.34	+1.3
3,748,978	-		Sama_3162	0.34	+5.1
3,749,198	+		Sama_3162	0.86	-0.3
3,749,198	+		Sama_3162	0.86	+0.5
3,749,199	-		Sama_3162	0.86	+3.9
3,749,199	-		Sama_3162	0.86	+5.1
3,749,199	-		Sama_3162	0.86	+3.6
3,749,199	-		Sama_3162	0.86	-0.3
3,749,199	-		Sama_3162	0.86	+4.3
3,749,199	-		Sama_3162	0.86	+2.8
3,749,199	-		Sama_3162	0.86	+0.4
3,749,353	-				+3.5
3,749,373	+				+0.4
3,749,373	+				-1.0
3,749,373	+				-1.0
3,749,373	+				-0.5
3,749,373	+				-1.0
3,749,374	-				+5.4
3,749,374	-				+3.3
3,749,374	-				+2.7
3,749,374	-				-0.1
3,749,446	+				-0.3
3,749,541	-		Sama_3163	0.14	+1.0
3,749,577	+		Sama_3163	0.16	+1.6
3,749,577	+		Sama_3163	0.16	-0.1
3,749,578	-		Sama_3163	0.16	+4.3
3,749,578	-		Sama_3163	0.16	+2.5
3,749,636	+		Sama_3163	0.19	-0.2
3,749,637	-		Sama_3163	0.19	+2.6
3,749,637	-		Sama_3163	0.19	+4.4
3,749,642	+		Sama_3163	0.19	-0.7
3,749,642	+		Sama_3163	0.19	-0.3
3,749,642	+		Sama_3163	0.19	+1.2
3,749,642	+		Sama_3163	0.19	-2.1
3,749,642	+		Sama_3163	0.19	-1.3
3,749,643	-		Sama_3163	0.19	+4.1
3,749,669	+		Sama_3163	0.20	+0.1
3,749,670	-		Sama_3163	0.20	+2.9
3,749,670	-		Sama_3163	0.20	+4.0
3,749,670	-		Sama_3163	0.20	+4.0
3,749,741	-		Sama_3163	0.24	+3.4
3,749,741	-		Sama_3163	0.24	+3.8
3,749,803	+		Sama_3163	0.27	-2.3
3,749,803	+		Sama_3163	0.27	-0.8
3,749,804	-		Sama_3163	0.27	-0.1
3,749,804	-		Sama_3163	0.27	+2.4
3,749,804	-		Sama_3163	0.27	-0.4
3,749,804	-		Sama_3163	0.27	+0.0
3,749,835	+		Sama_3163	0.28	-0.6
3,749,836	-		Sama_3163	0.28	+2.3
3,749,847	+		Sama_3163	0.29	-1.2
3,749,847	+		Sama_3163	0.29	+0.1
3,749,848	-		Sama_3163	0.29	+2.6
3,749,848	-		Sama_3163	0.29	+2.3
3,749,848	-		Sama_3163	0.29	+2.5
3,749,904	+		Sama_3163	0.32	+0.9
3,749,904	+		Sama_3163	0.32	-1.1
3,749,904	+		Sama_3163	0.32	-0.3
3,749,904	+		Sama_3163	0.32	-0.0
3,749,904	+		Sama_3163	0.32	-0.7
3,749,904	+		Sama_3163	0.32	+1.0
3,749,904	+		Sama_3163	0.32	+1.6
3,749,904	+		Sama_3163	0.32	+1.8
3,749,905	-		Sama_3163	0.32	-1.1
3,749,905	-		Sama_3163	0.32	-0.1
3,749,905	-		Sama_3163	0.32	+4.3
3,749,905	-		Sama_3163	0.32	+1.5
3,749,905	-		Sama_3163	0.32	+0.8
3,749,905	-		Sama_3163	0.32	-0.3
3,749,905	-		Sama_3163	0.32	+1.3
3,749,905	-		Sama_3163	0.32	+2.7
3,749,905	-		Sama_3163	0.32	+0.0
3,749,905	-		Sama_3163	0.32	+2.8
3,749,905	-		Sama_3163	0.32	+2.2
3,749,905	-		Sama_3163	0.32	+3.5
3,749,905	-		Sama_3163	0.32	+1.7
3,749,905	-		Sama_3163	0.32	+1.2
3,749,905	-		Sama_3163	0.32	-0.5
3,749,908	+		Sama_3163	0.32	-1.1
3,749,909	-		Sama_3163	0.32	-2.1
3,749,909	-		Sama_3163	0.32	+0.8
3,749,909	-		Sama_3163	0.32	+2.5
3,749,909	-		Sama_3163	0.32	+2.3
3,749,909	-		Sama_3163	0.32	-0.6
3,749,930	+		Sama_3163	0.33	-0.9
3,749,936	+		Sama_3163	0.33	+0.2
3,749,936	+		Sama_3163	0.33	-0.4
3,749,937	-		Sama_3163	0.33	+0.1
3,749,937	-		Sama_3163	0.33	+0.0
3,749,937	-		Sama_3163	0.33	+1.8
3,749,954	+		Sama_3163	0.34	-2.6
3,749,996	+		Sama_3163	0.36	-1.3
3,749,996	+		Sama_3163	0.36	-0.3
3,749,996	+		Sama_3163	0.36	+0.1
3,749,996	+		Sama_3163	0.36	+0.9
3,749,997	-		Sama_3163	0.36	-0.7
3,750,002	+		Sama_3163	0.36	-0.1
3,750,041	+		Sama_3163	0.38	+0.1
3,750,042	-		Sama_3163	0.38	+0.4
3,750,042	-		Sama_3163	0.38	+1.4
3,750,042	-		Sama_3163	0.38	+3.6
3,750,042	-		Sama_3163	0.38	-0.2
3,750,066	+		Sama_3163	0.39	-2.3
3,750,067	-		Sama_3163	0.40	-0.1
3,750,095	-		Sama_3163	0.41	-2.3
3,750,095	-		Sama_3163	0.41	+3.5
3,750,095	-		Sama_3163	0.41	-0.7
3,750,142	+		Sama_3163	0.43	-1.1
3,750,143	-		Sama_3163	0.43	+0.2
3,750,152	+		Sama_3163	0.44	+0.5
3,750,152	+		Sama_3163	0.44	-2.9
3,750,152	+		Sama_3163	0.44	-1.1
3,750,153	-		Sama_3163	0.44	-1.8
3,750,153	-		Sama_3163	0.44	-1.1
3,750,153	-		Sama_3163	0.44	+1.8
3,750,192	+		Sama_3163	0.46	-1.6
3,750,192	+		Sama_3163	0.46	+3.8
3,750,193	-		Sama_3163	0.46	+0.4
3,750,193	-		Sama_3163	0.46	+0.5
3,750,227	+		Sama_3163	0.47	+1.0
3,750,227	+		Sama_3163	0.47	+1.0
3,750,227	+		Sama_3163	0.47	-1.0
3,750,227	+		Sama_3163	0.47	-0.9
3,750,228	-		Sama_3163	0.47	+1.5
3,750,229	+		Sama_3163	0.47	-0.1
3,750,230	-		Sama_3163	0.47	-0.0
3,750,237	+		Sama_3163	0.48	+0.1
3,750,237	+		Sama_3163	0.48	+0.7
3,750,237	+		Sama_3163	0.48	-1.9
3,750,237	+		Sama_3163	0.48	+0.0
3,750,238	-		Sama_3163	0.48	+3.0
3,750,238	-		Sama_3163	0.48	-0.8
3,750,238	-		Sama_3163	0.48	-1.3