Strain Fitness in Shewanella amazonensis SB2B around Sama_3161

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
3,746,156	+				-0.8
3,746,156	+				+0.6
3,746,157	-				-1.1
3,746,158	+				-0.8
3,746,158	+				+1.0
3,746,158	+				+0.3
3,746,158	+				-1.7
3,746,158	+				-0.2
3,746,158	+				-1.8
3,746,158	+				+0.0
3,746,158	+				-1.6
3,746,159	-				-1.2
3,746,159	-				-0.5
3,746,159	-				-1.0
3,746,159	-				-1.7
3,746,159	-				+1.0
3,746,159	-				-2.3
3,746,159	-				-2.0
3,746,187	-				-0.8
3,746,267	+		Sama_3160	0.18	+0.5
3,746,267	+		Sama_3160	0.18	+5.5
3,746,267	+		Sama_3160	0.18	-3.2
3,746,376	-		Sama_3160	0.30	+0.4
3,746,376	-		Sama_3160	0.30	-1.6
3,746,376	-		Sama_3160	0.30	+0.0
3,746,412	-		Sama_3160	0.34	+1.7
3,746,421	+		Sama_3160	0.35	+0.3
3,746,421	+		Sama_3160	0.35	+1.0
3,746,421	+		Sama_3160	0.35	-0.5
3,746,422	-		Sama_3160	0.35	+0.2
3,746,426	+		Sama_3160	0.35	+0.1
3,746,427	-		Sama_3160	0.35	+0.2
3,746,427	-		Sama_3160	0.35	+0.7
3,746,474	+		Sama_3160	0.41	-0.8
3,746,475	-		Sama_3160	0.41	+0.7
3,746,476	+		Sama_3160	0.41	-1.4
3,746,476	+		Sama_3160	0.41	+0.4
3,746,476	+		Sama_3160	0.41	-1.9
3,746,476	+		Sama_3160	0.41	+0.0
3,746,476	+		Sama_3160	0.41	+2.3
3,746,477	-		Sama_3160	0.41	-1.7
3,746,477	-		Sama_3160	0.41	+0.9
3,746,477	-		Sama_3160	0.41	-0.2
3,746,477	-		Sama_3160	0.41	-0.0
3,746,477	-		Sama_3160	0.41	-1.2
3,746,501	+		Sama_3160	0.44	-0.1
3,746,502	-		Sama_3160	0.44	+0.3
3,746,508	+		Sama_3160	0.44	+1.2
3,746,592	-		Sama_3160	0.54	-0.6
3,746,592	-		Sama_3160	0.54	+1.9
3,746,592	-		Sama_3160	0.54	-0.3
3,746,592	-		Sama_3160	0.54	+0.4
3,746,592	-		Sama_3160	0.54	+0.8
3,746,592	-		Sama_3160	0.54	-1.2
3,746,613	+		Sama_3160	0.56	+1.6
3,746,613	+		Sama_3160	0.56	-2.5
3,746,613	+		Sama_3160	0.56	+0.6
3,746,614	-		Sama_3160	0.56	+2.1
3,746,614	-		Sama_3160	0.56	+1.5
3,746,618	+		Sama_3160	0.57	+0.2
3,746,618	+		Sama_3160	0.57	+0.9
3,746,618	+		Sama_3160	0.57	+0.8
3,746,618	+		Sama_3160	0.57	+0.4
3,746,618	+		Sama_3160	0.57	-1.6
3,746,624	+		Sama_3160	0.57	-1.4
3,746,624	+		Sama_3160	0.57	+0.7
3,746,625	-		Sama_3160	0.57	-2.6
3,746,625	-		Sama_3160	0.57	+0.3
3,746,636	+		Sama_3160	0.58	-2.4
3,746,637	-		Sama_3160	0.59	+0.9
3,746,637	-		Sama_3160	0.59	+1.7
3,746,639	+		Sama_3160	0.59	-1.3
3,746,640	-		Sama_3160	0.59	+2.4
3,746,640	-		Sama_3160	0.59	-0.0
3,746,678	+		Sama_3160	0.63	-3.9
3,746,678	+		Sama_3160	0.63	+1.1
3,746,678	+		Sama_3160	0.63	-3.4
3,746,678	+		Sama_3160	0.63	+0.9
3,746,679	-		Sama_3160	0.63	+0.5
3,746,679	-		Sama_3160	0.63	+2.3
3,746,714	+		Sama_3160	0.67	-0.7
3,746,757	+		Sama_3160	0.72	+1.3
3,746,757	+		Sama_3160	0.72	+2.2
3,746,757	+		Sama_3160	0.72	-0.8
3,746,758	-		Sama_3160	0.72	-2.2
3,746,758	-		Sama_3160	0.72	+0.3
3,746,758	-		Sama_3160	0.72	+1.0
3,746,758	-		Sama_3160	0.72	-0.4
3,746,797	+		Sama_3160	0.76	-2.7
3,746,797	+		Sama_3160	0.76	+0.9
3,746,797	+		Sama_3160	0.76	-1.4
3,746,797	+		Sama_3160	0.76	+0.5
3,746,797	+		Sama_3160	0.76	-0.8
3,746,797	+		Sama_3160	0.76	-0.1
3,746,797	+		Sama_3160	0.76	+1.7
3,746,798	-		Sama_3160	0.76	-1.1
3,746,798	-		Sama_3160	0.76	+0.8
3,746,798	-		Sama_3160	0.76	+0.6
3,746,798	-		Sama_3160	0.76	-1.0
3,746,798	-		Sama_3160	0.76	-2.3
3,746,798	-		Sama_3160	0.76	+0.4
3,746,805	-		Sama_3160	0.77	+1.7
3,746,805	-		Sama_3160	0.77	-1.0
3,746,891	+		Sama_3160	0.87	+1.2
3,746,892	-		Sama_3160	0.87	+1.7
3,746,892	-		Sama_3160	0.87	-1.3
3,746,892	-		Sama_3160	0.87	+2.7
3,746,892	-		Sama_3160	0.87	+2.0
3,746,892	-		Sama_3160	0.87	-1.1
3,746,899	+		Sama_3160	0.88	+0.6
3,746,899	+		Sama_3160	0.88	-0.4
3,746,899	+		Sama_3160	0.88	-2.4
3,746,899	+		Sama_3160	0.88	-0.9
3,746,900	-		Sama_3160	0.88	-1.3
3,746,900	-		Sama_3160	0.88	-1.7
3,746,900	-		Sama_3160	0.88	+0.1
3,746,900	-		Sama_3160	0.88	+0.7
3,746,910	-		Sama_3160	0.89	+2.6
3,746,910	-		Sama_3160	0.89	+0.2
3,746,916	+		Sama_3160	0.89	+2.0
3,746,916	+		Sama_3160	0.89	-1.0
3,746,916	+		Sama_3160	0.89	-1.4
3,746,916	+		Sama_3160	0.89	-0.4
3,746,916	+		Sama_3160	0.89	-3.7
3,746,917	-		Sama_3160	0.90	-0.2
3,746,917	-		Sama_3160	0.90	-1.3
3,746,917	-		Sama_3160	0.90	+0.5
3,746,920	-		Sama_3160	0.90	+1.2
3,746,975	-				+2.3
3,746,975	-				+0.7
3,746,975	-				+0.2
3,747,017	+				+1.8
3,747,017	+				+1.5
3,747,017	+				+4.4
3,747,017	+				-1.8
3,747,017	+				-1.7
3,747,018	-				+2.2
3,747,018	-				+1.0
3,747,018	-				+1.3
3,747,018	-				-2.4
3,747,019	+				+0.2
3,747,019	+				+1.2
3,747,019	+				+1.0
3,747,020	-				+1.9
3,747,020	-				-0.6
3,747,020	-				-1.4
3,747,020	-				-1.3
3,747,021	-				-2.8
3,747,049	+				-1.3
3,747,066	+				+1.9
3,747,069	+				-0.7
3,747,069	+				-1.3
3,747,069	+				+0.0
3,747,069	+				-0.3
3,747,069	+				+1.1
3,747,069	+				+0.6
3,747,091	+				+1.0
3,747,092	-				+0.3
3,747,092	-				+0.2
3,747,092	-				-0.6
3,747,173	-				+1.0
3,747,173	-				+0.5
3,747,203	+				-2.0
3,747,203	+				-2.0
3,747,339	-		Sama_3161	0.14	+0.4
3,747,339	-		Sama_3161	0.14	+1.4
3,747,339	-		Sama_3161	0.14	-0.6
3,747,339	-		Sama_3161	0.14	-2.1
3,747,339	-		Sama_3161	0.14	-1.2
3,747,339	-		Sama_3161	0.14	-2.3
3,747,339	-		Sama_3161	0.14	+0.0
3,747,342	+		Sama_3161	0.15	-1.9
3,747,342	+		Sama_3161	0.15	-0.2
3,747,342	+		Sama_3161	0.15	-0.8
3,747,342	+		Sama_3161	0.15	-0.6
3,747,343	-		Sama_3161	0.15	+0.1
3,747,343	-		Sama_3161	0.15	-2.1
3,747,343	-		Sama_3161	0.15	-1.1
3,747,343	-		Sama_3161	0.15	+1.6
3,747,343	-		Sama_3161	0.15	+0.4
3,747,360	-		Sama_3161	0.16	-1.3
3,747,391	+		Sama_3161	0.17	-2.2
3,747,392	-		Sama_3161	0.17	+0.4
3,747,392	-		Sama_3161	0.17	+0.2
3,747,419	+		Sama_3161	0.19	-2.1
3,747,419	+		Sama_3161	0.19	+2.1
3,747,419	+		Sama_3161	0.19	-2.1
3,747,420	-		Sama_3161	0.19	+1.1
3,747,420	-		Sama_3161	0.19	+1.5
3,747,444	-		Sama_3161	0.20	+1.4
3,747,444	-		Sama_3161	0.20	-1.3
3,747,444	-		Sama_3161	0.20	-1.3
3,747,476	+		Sama_3161	0.22	-1.8
3,747,568	-		Sama_3161	0.28	-2.0
3,747,623	-		Sama_3161	0.31	-0.2
3,747,623	-		Sama_3161	0.31	+1.4
3,747,623	-		Sama_3161	0.31	+0.2
3,747,732	-		Sama_3161	0.37	-0.6
3,747,756	-		Sama_3161	0.38	+0.0
3,747,796	+		Sama_3161	0.41	+1.9
3,747,797	-		Sama_3161	0.41	+0.2
3,747,826	+		Sama_3161	0.43	-1.1
3,747,826	+		Sama_3161	0.43	-1.9
3,747,827	-		Sama_3161	0.43	-0.1
3,747,827	-		Sama_3161	0.43	-1.1
3,747,829	+		Sama_3161	0.43	-0.7
3,747,830	-		Sama_3161	0.43	-0.9
3,747,830	-		Sama_3161	0.43	-0.3
3,747,830	-		Sama_3161	0.43	-1.0
3,747,894	-		Sama_3161	0.46	-1.8
3,747,894	-		Sama_3161	0.46	+1.0
3,747,919	+		Sama_3161	0.48	-0.3
3,747,920	-		Sama_3161	0.48	+0.2
3,747,920	-		Sama_3161	0.48	+0.4
3,747,920	-		Sama_3161	0.48	+0.2
3,747,958	+		Sama_3161	0.50	-3.1
3,747,958	+		Sama_3161	0.50	-0.8
3,747,958	+		Sama_3161	0.50	+0.2
3,747,958	+		Sama_3161	0.50	+0.9
3,747,958	+		Sama_3161	0.50	-2.1
3,747,958	+		Sama_3161	0.50	-1.8
3,747,958	+		Sama_3161	0.50	+0.4
3,747,958	+		Sama_3161	0.50	+1.2
3,747,959	-		Sama_3161	0.50	+0.9
3,747,959	-		Sama_3161	0.50	+1.4
3,747,991	+		Sama_3161	0.52	-1.2
3,747,992	-		Sama_3161	0.52	+0.6
3,747,992	-		Sama_3161	0.52	-1.0
3,747,992	-		Sama_3161	0.52	+2.0
3,747,992	-		Sama_3161	0.52	-0.6
3,747,992	-		Sama_3161	0.52	+0.6
3,747,992	-		Sama_3161	0.52	-1.2
3,747,992	-		Sama_3161	0.52	-0.2
3,747,992	-		Sama_3161	0.52	+1.3
3,747,992	-		Sama_3161	0.52	+1.4
3,747,992	-		Sama_3161	0.52	-0.5
3,747,992	-		Sama_3161	0.52	+2.0
3,747,992	-		Sama_3161	0.52	+1.6
3,747,992	-		Sama_3161	0.52	-1.4
3,747,998	+		Sama_3161	0.52	-0.3
3,747,998	+		Sama_3161	0.52	+0.5
3,747,999	-		Sama_3161	0.53	-2.0
3,748,015	+		Sama_3161	0.53	-0.1
3,748,015	+		Sama_3161	0.53	+0.9
3,748,015	+		Sama_3161	0.53	-1.0
3,748,015	+		Sama_3161	0.53	+1.3
3,748,016	-		Sama_3161	0.53	-0.1
3,748,016	-		Sama_3161	0.53	-0.8
3,748,016	-		Sama_3161	0.53	+1.0
3,748,016	-		Sama_3161	0.53	+2.3
3,748,016	-		Sama_3161	0.53	+2.7
3,748,016	-		Sama_3161	0.53	+1.0
3,748,016	-		Sama_3161	0.53	+3.3
3,748,016	-		Sama_3161	0.53	+0.0
3,748,016	-		Sama_3161	0.53	-1.0
3,748,016	-		Sama_3161	0.53	+0.2
3,748,017	+		Sama_3161	0.54	-0.1
3,748,018	-		Sama_3161	0.54	+0.7
3,748,086	-		Sama_3161	0.58	-3.1
3,748,086	-		Sama_3161	0.58	+0.7
3,748,086	-		Sama_3161	0.58	+1.0
3,748,093	-		Sama_3161	0.58	+0.8
3,748,143	+		Sama_3161	0.61	-1.0
3,748,143	+		Sama_3161	0.61	+0.3
3,748,267	-		Sama_3161	0.68	-0.3
3,748,274	+		Sama_3161	0.68	-0.7
3,748,298	+		Sama_3161	0.70	+1.7
3,748,299	-		Sama_3161	0.70	-2.1
3,748,311	-		Sama_3161	0.71	-0.1
3,748,311	-		Sama_3161	0.71	-0.3
3,748,311	-		Sama_3161	0.71	+0.6
3,748,311	-		Sama_3161	0.71	+0.3
3,748,311	-		Sama_3161	0.71	-0.2
3,748,319	+		Sama_3161	0.71	-0.9
3,748,366	+		Sama_3161	0.74	+0.3
3,748,473	-		Sama_3161	0.80	-0.2
3,748,473	-		Sama_3161	0.80	-0.7
3,748,511	+		Sama_3161	0.82	-1.4
3,748,539	+		Sama_3161	0.84	+1.6
3,748,539	+		Sama_3161	0.84	+1.3
3,748,539	+		Sama_3161	0.84	+1.4
3,748,539	+		Sama_3161	0.84	-0.1
3,748,539	+		Sama_3161	0.84	-0.8
3,748,539	+		Sama_3161	0.84	-1.8
3,748,539	+		Sama_3161	0.84	-1.8
3,748,539	+		Sama_3161	0.84	-0.9
3,748,539	+		Sama_3161	0.84	+0.6
3,748,540	-		Sama_3161	0.84	+1.4
3,748,540	-		Sama_3161	0.84	-1.0
3,748,540	-		Sama_3161	0.84	+0.0
3,748,540	-		Sama_3161	0.84	+1.4
3,748,540	-		Sama_3161	0.84	-2.3
3,748,540	-		Sama_3161	0.84	-0.3
3,748,540	-		Sama_3161	0.84	-2.8
3,748,540	-		Sama_3161	0.84	+1.4
3,748,540	-		Sama_3161	0.84	+0.8
3,748,540	-		Sama_3161	0.84	-2.1
3,748,540	-		Sama_3161	0.84	-0.6
3,748,540	-		Sama_3161	0.84	+2.3
3,748,578	+		Sama_3161	0.86	-1.9
3,748,578	+		Sama_3161	0.86	-1.9
3,748,579	-		Sama_3161	0.86	+1.1
3,748,579	-		Sama_3161	0.86	+2.0
3,748,579	-		Sama_3161	0.86	-0.7
3,748,595	+		Sama_3161	0.87	-0.6
3,748,596	-		Sama_3161	0.87	+1.1
3,748,658	+				-1.9
3,748,658	+				+2.0
3,748,658	+				-0.8
3,748,658	+				-0.3
3,748,658	+				-0.2
3,748,658	+				-0.1
3,748,658	+				+1.7
3,748,658	+				+1.2
3,748,658	+				-1.9
3,748,658	+				-0.4
3,748,658	+				+0.0
3,748,658	+				+1.8
3,748,659	-				-0.1
3,748,659	-				+0.0
3,748,659	-				+1.8
3,748,659	-				+1.7
3,748,659	-				-1.3
3,748,659	-				+1.0
3,748,659	-				-0.1
3,748,659	-				+0.6
3,748,659	-				+0.4
3,748,659	-				+1.7
3,748,659	-				+1.6
3,748,659	-				+0.2
3,748,659	-				+0.4
3,748,660	+				+0.7
3,748,660	+				+0.4
3,748,660	+				+0.0
3,748,660	+				+0.4
3,748,660	+				-1.1
3,748,660	+				-3.2
3,748,660	+				-2.7
3,748,660	+				-2.1
3,748,660	+				-1.0
3,748,661	-				-0.0
3,748,661	-				+2.4
3,748,661	-				-1.7
3,748,661	-				-1.3
3,748,661	-				-0.1
3,748,661	-				+3.0
3,748,661	-				-0.4
3,748,661	-				-0.5
3,748,720	+				-0.8
3,748,721	-				-0.0
3,748,721	-				+0.8
3,748,721	-				+0.2
3,748,773	+				-2.6
3,748,773	+				+0.1
3,748,774	-				+0.4
3,748,774	-				+0.7
3,748,774	-				+0.0
3,748,774	-				-1.1
3,748,774	-				-0.2
3,748,826	-				+0.8
3,748,834	+				-1.7
3,748,876	-		Sama_3162	0.10	+2.4
3,748,882	-		Sama_3162	0.12	-1.1
3,748,882	-		Sama_3162	0.12	+1.3
3,748,882	-		Sama_3162	0.12	+1.4
3,748,882	-		Sama_3162	0.12	-1.0
3,748,903	+		Sama_3162	0.17	-0.1
3,748,903	+		Sama_3162	0.17	+0.8
3,748,903	+		Sama_3162	0.17	-2.6
3,748,903	+		Sama_3162	0.17	+0.8
3,748,906	-		Sama_3162	0.17	+2.0
3,748,909	-		Sama_3162	0.18	+3.7
3,748,922	+		Sama_3162	0.21	-2.7
3,748,923	-		Sama_3162	0.21	+1.2
3,748,941	+		Sama_3162	0.26	+2.8
3,748,942	-		Sama_3162	0.26	+3.2
3,748,956	+		Sama_3162	0.29	+0.4
3,748,956	+		Sama_3162	0.29	-1.8
3,748,956	+		Sama_3162	0.29	+1.8
3,748,956	+		Sama_3162	0.29	+1.0
3,748,957	-		Sama_3162	0.29	+3.5
3,748,957	-		Sama_3162	0.29	+6.0
3,748,957	-		Sama_3162	0.29	+4.6
3,748,957	-		Sama_3162	0.29	+4.1
3,748,957	-		Sama_3162	0.29	+4.1
3,748,977	+		Sama_3162	0.34	+0.0
3,748,977	+		Sama_3162	0.34	+1.3
3,748,978	-		Sama_3162	0.34	+5.1
3,749,198	+		Sama_3162	0.86	-0.3
3,749,198	+		Sama_3162	0.86	+0.5
3,749,199	-		Sama_3162	0.86	+3.9
3,749,199	-		Sama_3162	0.86	+5.1
3,749,199	-		Sama_3162	0.86	+3.6
3,749,199	-		Sama_3162	0.86	-0.3
3,749,199	-		Sama_3162	0.86	+4.3
3,749,199	-		Sama_3162	0.86	+2.8
3,749,199	-		Sama_3162	0.86	+0.4
3,749,353	-				+3.5
3,749,373	+				+0.4
3,749,373	+				-1.0
3,749,373	+				-1.0
3,749,373	+				-0.5
3,749,373	+				-1.0
3,749,374	-				+5.4
3,749,374	-				+3.3
3,749,374	-				+2.7
3,749,374	-				-0.1
3,749,446	+				-0.3
3,749,541	-		Sama_3163	0.14	+1.0
3,749,577	+		Sama_3163	0.16	+1.6
3,749,577	+		Sama_3163	0.16	-0.1
3,749,578	-		Sama_3163	0.16	+4.3
3,749,578	-		Sama_3163	0.16	+2.5
3,749,636	+		Sama_3163	0.19	-0.2
3,749,637	-		Sama_3163	0.19	+2.6
3,749,637	-		Sama_3163	0.19	+4.4
3,749,642	+		Sama_3163	0.19	-0.7
3,749,642	+		Sama_3163	0.19	-0.3
3,749,642	+		Sama_3163	0.19	+1.2
3,749,642	+		Sama_3163	0.19	-2.1
3,749,642	+		Sama_3163	0.19	-1.3
3,749,643	-		Sama_3163	0.19	+4.1
3,749,669	+		Sama_3163	0.20	+0.1
3,749,670	-		Sama_3163	0.20	+2.9
3,749,670	-		Sama_3163	0.20	+4.0
3,749,670	-		Sama_3163	0.20	+4.0
3,749,741	-		Sama_3163	0.24	+3.4
3,749,741	-		Sama_3163	0.24	+3.8
3,749,803	+		Sama_3163	0.27	-2.3
3,749,803	+		Sama_3163	0.27	-0.8
3,749,804	-		Sama_3163	0.27	-0.1
3,749,804	-		Sama_3163	0.27	+2.4
3,749,804	-		Sama_3163	0.27	-0.4
3,749,804	-		Sama_3163	0.27	+0.0