Strain Fitness in Shewanella amazonensis SB2B around Sama_R0118

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
3,606,455	+				-0.9
3,606,455	+				+0.1
3,606,455	+				+0.9
3,606,455	+				-1.1
3,606,456	-				-0.8
3,606,456	-				+0.8
3,606,456	-				-0.9
3,606,524	+				+0.6
3,606,526	+				+0.4
3,606,526	+				-1.0
3,606,526	+				-0.1
3,606,526	+				+0.2
3,606,526	+				-0.9
3,606,526	+				-2.1
3,606,526	+				+0.1
3,606,526	+				+0.2
3,606,526	+				-0.1
3,606,526	+				-1.6
3,606,526	+				+0.9
3,606,526	+				-1.0
3,606,526	+				-1.4
3,606,526	+				+1.0
3,606,526	+				+0.5
3,606,526	+				+1.9
3,606,526	+				-1.2
3,606,526	+				-0.3
3,606,526	+				-0.8
3,606,526	+				+1.9
3,606,526	+				+1.9
3,606,526	+				-2.0
3,606,526	+				+2.5
3,606,526	+				-0.1
3,606,527	-				+0.4
3,606,527	-				-0.9
3,606,527	-				-2.8
3,606,527	-				+1.4
3,606,527	-				-0.6
3,606,527	-				-0.3
3,606,527	-				+0.3
3,606,527	-				-1.4
3,606,527	-				-1.4
3,606,527	-				-0.4
3,606,527	-				-1.8
3,606,527	-				+0.0
3,606,527	-				+2.4
3,606,527	-				+0.4
3,606,527	-				-0.1
3,606,527	-				-2.1
3,606,527	-				-0.1
3,606,528	+				-1.9
3,606,528	+				+1.9
3,606,528	+				+0.6
3,606,528	+				-1.5
3,606,528	+				+1.6
3,606,528	+				+0.3
3,606,528	+				-0.4
3,606,528	+				+1.1
3,606,528	+				-2.1
3,606,528	+				-0.9
3,606,528	+				+1.0
3,606,528	+				-2.3
3,606,528	+				+0.4
3,606,528	+				+0.0
3,606,528	+				+0.5
3,606,528	+				+0.7
3,606,529	-				+0.2
3,606,529	-				-0.3
3,606,529	-				-2.0
3,606,529	-				+0.7
3,606,529	-				-0.4
3,606,529	-				-1.7
3,606,529	-				-1.4
3,606,529	-				+0.9
3,606,529	-				-0.9
3,606,529	-				-0.2
3,606,529	-				-2.2
3,606,529	-				-1.9
3,606,529	-				+0.1
3,606,529	-				-0.5
3,606,529	-				+0.7
3,606,529	-				-2.1
3,606,529	-				-0.1
3,606,529	-				-0.4
3,606,529	-				-0.9
3,606,529	-				+1.4
3,606,529	-				+1.8
3,606,529	-				-1.9
3,606,529	-				+1.2
3,606,529	-				-0.8
3,606,529	-				-0.4
3,606,529	-				+0.4
3,606,555	+				+0.2
3,606,555	+				+0.4
3,606,555	+				-0.3
3,606,556	-				+0.4
3,606,561	+				+0.8
3,606,567	+				+1.9
3,606,575	-				-0.3
3,606,597	+				-0.2
3,606,597	+				-0.4
3,606,612	+				-1.9
3,606,662	-				-0.4
3,606,682	-				-3.2
3,606,682	-				-1.5
3,606,682	-				+1.2
3,606,682	-				-1.0
3,606,698	-				+1.3
3,606,714	+				-1.4
3,606,714	+				+2.2
3,606,714	+				-0.4
3,606,714	+				+0.2
3,606,714	+				+2.1
3,606,715	-				-1.4
3,606,715	-				-1.1
3,606,715	-				-1.3
3,606,715	-				+1.5
3,606,715	-				-1.9
3,606,715	-				-1.5
3,606,715	-				-0.7
3,606,715	-				-0.6
3,606,715	-				+0.2
3,606,718	+				-1.5
3,606,718	+				+0.8
3,606,719	-				-1.6
3,606,719	-				-0.9
3,606,719	-				+0.6
3,606,719	-				+4.1
3,606,719	-				+0.4
3,606,719	-				+0.8
3,606,719	-				+0.7
3,606,736	+				-2.7
3,606,736	+				-0.4
3,606,737	-				+0.1
3,606,737	-				+2.2
3,606,913	+		Sama_3031	0.44	+1.4
3,606,914	-		Sama_3031	0.44	+0.5
3,606,958	+		Sama_3031	0.54	+0.8
3,606,968	-		Sama_3031	0.56	-1.8
3,606,999	+		Sama_3031	0.63	+0.2
3,606,999	+		Sama_3031	0.63	-0.6
3,607,000	-		Sama_3031	0.63	-1.8
3,607,000	-		Sama_3031	0.63	+0.9
3,607,000	-		Sama_3031	0.63	+0.3
3,607,000	-		Sama_3031	0.63	-1.2
3,607,000	-		Sama_3031	0.63	+0.3
3,607,000	-		Sama_3031	0.63	+0.4
3,607,000	-		Sama_3031	0.63	-0.8
3,607,021	+		Sama_3031	0.68	+1.7
3,607,022	-		Sama_3031	0.68	+1.0
3,607,099	-		Sama_3031	0.85	+0.9
3,607,099	-		Sama_3031	0.85	-2.0
3,607,135	-				-0.2
3,607,163	-				-2.5
3,607,168	+				-0.2
3,607,168	+				+1.4
3,607,169	-				-0.2
3,607,199	-				+0.6
3,607,199	-				+0.4
3,607,229	+				-0.9
3,607,230	-				+0.6
3,607,242	-				-0.2
3,607,242	-				-0.6
3,607,253	-				+0.2
3,607,276	+				-0.1
3,607,332	+				-0.8
3,607,332	+				-2.4
3,607,333	-				-0.6
3,607,335	+				-0.5
3,607,336	-				-2.5
3,607,336	-				+1.1
3,607,336	-				+0.4
3,607,414	+				+0.2
3,607,415	-				+1.6
3,607,423	-				-2.0
3,607,423	-				-1.9
3,607,434	-				-0.1
3,607,434	-				-0.3
3,607,434	-				+0.3
3,607,481	-		Sama_R0118	0.43	-1.4
3,607,481	-		Sama_R0118	0.43	-0.4
3,607,483	-		Sama_R0118	0.46	-1.0
3,607,677	-		Sama_R0120	0.14	-2.4
3,607,699	-		Sama_R0120	0.43	-1.2
3,607,699	-		Sama_R0120	0.43	+0.1
3,607,699	-		Sama_R0120	0.43	-2.4
3,607,699	-		Sama_R0120	0.43	+0.4
3,607,699	-		Sama_R0120	0.43	-1.7
3,607,699	-		Sama_R0120	0.43	-0.2
3,607,699	-		Sama_R0120	0.43	-0.0
3,607,972	-				-0.7
3,607,972	-				-1.4
3,607,972	-				-1.8
3,607,972	-				-1.6
3,607,972	-				-0.6
3,607,981	-				+1.2
3,607,981	-				-0.6
3,607,981	-				+0.9
3,608,009	-				-0.0
3,608,023	-				-1.1
3,608,023	-				-0.9
3,608,050	-				+0.4
3,608,050	-				-0.6
3,608,116	+				-2.3
3,608,116	+				+1.0
3,608,116	+				+1.2
3,608,116	+				-0.4
3,608,116	+				-2.0
3,608,116	+				+3.1
3,608,117	-				-1.5
3,608,117	-				-3.4
3,608,120	+				-0.4
3,608,120	+				-1.0
3,608,139	-				+0.7
3,608,143	-				-0.8