Strain Fitness in Shewanella amazonensis SB2B around Sama_3003

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
3,575,082	-		Sama_3002	0.23	-1.8
3,575,082	-		Sama_3002	0.23	-1.8
3,575,135	+		Sama_3002	0.29	+0.6
3,575,136	-		Sama_3002	0.29	+2.5
3,575,136	-		Sama_3002	0.29	-1.0
3,575,169	-		Sama_3002	0.33	+0.7
3,575,264	+		Sama_3002	0.43	+0.9
3,575,264	+		Sama_3002	0.43	-0.9
3,575,289	+		Sama_3002	0.46	+3.5
3,575,307	+		Sama_3002	0.48	+0.5
3,575,447	+		Sama_3002	0.64	+2.1
3,575,447	+		Sama_3002	0.64	-0.2
3,575,447	+		Sama_3002	0.64	+0.8
3,575,447	+		Sama_3002	0.64	-0.4
3,575,447	+		Sama_3002	0.64	-1.1
3,575,447	+		Sama_3002	0.64	-0.9
3,575,447	+		Sama_3002	0.64	+0.0
3,575,448	-		Sama_3002	0.64	-0.2
3,575,448	-		Sama_3002	0.64	-1.4
3,575,448	-		Sama_3002	0.64	-0.9
3,575,448	-		Sama_3002	0.64	+0.5
3,575,448	-		Sama_3002	0.64	+0.0
3,575,448	-		Sama_3002	0.64	+0.3
3,575,448	-		Sama_3002	0.64	+3.0
3,575,448	-		Sama_3002	0.64	-1.4
3,575,448	-		Sama_3002	0.64	-1.8
3,575,448	-		Sama_3002	0.64	-0.8
3,575,448	-		Sama_3002	0.64	+0.6
3,575,448	-		Sama_3002	0.64	+0.3
3,575,448	-		Sama_3002	0.64	-0.4
3,575,458	+		Sama_3002	0.65	-1.4
3,575,458	+		Sama_3002	0.65	-0.9
3,575,458	+		Sama_3002	0.65	+0.2
3,575,458	+		Sama_3002	0.65	-0.5
3,575,458	+		Sama_3002	0.65	+0.9
3,575,459	-		Sama_3002	0.65	-2.4
3,575,459	-		Sama_3002	0.65	-0.3
3,575,459	-		Sama_3002	0.65	+0.2
3,575,459	-		Sama_3002	0.65	-1.5
3,575,515	+		Sama_3002	0.72	-0.1
3,575,515	+		Sama_3002	0.72	+0.0
3,575,515	+		Sama_3002	0.72	-2.8
3,575,516	-		Sama_3002	0.72	+0.7
3,575,516	-		Sama_3002	0.72	-2.0
3,575,590	+		Sama_3002	0.80	-0.3
3,575,612	+		Sama_3002	0.82	+0.2
3,575,612	+		Sama_3002	0.82	+2.2
3,575,613	-		Sama_3002	0.83	+0.3
3,575,613	-		Sama_3002	0.83	-2.0
3,575,613	-		Sama_3002	0.83	+1.4
3,575,638	+		Sama_3002	0.85	+1.5
3,575,638	+		Sama_3002	0.85	+1.2
3,575,638	+		Sama_3002	0.85	-1.2
3,575,638	+		Sama_3002	0.85	-0.9
3,575,638	+		Sama_3002	0.85	-0.3
3,575,638	+		Sama_3002	0.85	-0.4
3,575,639	-		Sama_3002	0.85	+0.7
3,575,639	-		Sama_3002	0.85	+0.4
3,575,639	-		Sama_3002	0.85	-2.4
3,575,639	-		Sama_3002	0.85	+1.7
3,575,639	-		Sama_3002	0.85	+0.4
3,575,639	-		Sama_3002	0.85	+0.1
3,575,647	+		Sama_3002	0.86	-0.6
3,575,648	-		Sama_3002	0.86	-0.5
3,575,648	-		Sama_3002	0.86	-0.5
3,575,648	-		Sama_3002	0.86	+0.6
3,575,698	+				+0.3
3,575,713	+				+0.6
3,575,758	+				+2.1
3,575,758	+				+1.7
3,575,759	-				-1.2
3,575,759	-				-0.9
3,575,817	+				-0.7
3,575,818	-				-0.1
3,575,820	+				+3.4
3,575,820	+				+0.2
3,575,821	-				+0.3
3,575,821	-				-0.7
3,575,821	-				-0.1
3,575,834	+				+0.8
3,575,834	+				-1.2
3,575,835	-				+0.8
3,575,866	+				-0.9
3,575,867	-				+0.9
3,575,867	-				-2.5
3,575,872	+				-2.1
3,575,872	+				+0.1
3,575,882	-				-0.6
3,575,882	-				+1.4
3,575,882	-				-1.4
3,575,882	-				+1.1
3,575,929	+				+4.3
3,575,929	+				+1.5
3,575,929	+				+1.1
3,575,930	-				-0.4
3,575,930	-				-1.1
3,575,944	-				+0.4
3,575,978	+				-0.3
3,575,979	-				-0.6
3,576,008	-				-2.6
3,576,008	-				+0.9
3,576,042	+				+0.7
3,576,042	+				+1.8
3,576,042	+				-0.6
3,576,042	+				-1.3
3,576,043	-				-1.3
3,576,043	-				+0.9
3,576,043	-				-0.1
3,576,043	-				+0.2
3,576,081	+				-0.6
3,576,099	+				+2.0
3,576,099	+				+0.2
3,576,099	+				-2.3
3,576,100	-				+0.6
3,576,100	-				+1.5
3,576,438	+		Sama_3003	0.50	+0.7
3,576,438	+		Sama_3003	0.50	-0.7
3,576,438	+		Sama_3003	0.50	+0.7
3,576,439	-		Sama_3003	0.50	-2.9
3,576,439	-		Sama_3003	0.50	+0.9
3,576,439	-		Sama_3003	0.50	-2.9
3,576,439	-		Sama_3003	0.50	-1.1
3,576,439	-		Sama_3003	0.50	+0.7
3,576,442	+		Sama_3003	0.50	+0.4
3,576,442	+		Sama_3003	0.50	-1.6
3,576,495	+		Sama_3003	0.57	-1.9
3,576,495	+		Sama_3003	0.57	-2.1
3,576,496	-		Sama_3003	0.57	-1.8
3,576,496	-		Sama_3003	0.57	+0.2
3,576,496	-		Sama_3003	0.57	+0.4
3,576,496	-		Sama_3003	0.57	-0.1
3,576,640	-		Sama_3003	0.76	-0.4
3,576,654	+		Sama_3003	0.77	-2.0
3,576,654	+		Sama_3003	0.77	+1.5
3,576,654	+		Sama_3003	0.77	-1.4
3,576,654	+		Sama_3003	0.77	+1.9
3,576,654	+		Sama_3003	0.77	+1.9
3,576,654	+		Sama_3003	0.77	-0.9
3,576,654	+		Sama_3003	0.77	+0.5
3,576,654	+		Sama_3003	0.77	-1.3
3,576,654	+		Sama_3003	0.77	+2.0
3,576,654	+		Sama_3003	0.77	-1.6
3,576,654	+		Sama_3003	0.77	+0.2
3,576,654	+		Sama_3003	0.77	-1.4
3,576,654	+		Sama_3003	0.77	+1.2
3,576,655	-		Sama_3003	0.77	-0.7
3,576,655	-		Sama_3003	0.77	-0.6
3,576,655	-		Sama_3003	0.77	+1.7
3,576,655	-		Sama_3003	0.77	-0.2
3,576,655	-		Sama_3003	0.77	-0.1
3,576,655	-		Sama_3003	0.77	-1.9
3,576,655	-		Sama_3003	0.77	+2.1
3,576,655	-		Sama_3003	0.77	+2.0
3,576,655	-		Sama_3003	0.77	+0.9
3,576,655	-		Sama_3003	0.77	-1.9
3,576,655	-		Sama_3003	0.77	+1.3
3,576,655	-		Sama_3003	0.77	-0.6
3,576,724	+		Sama_3003	0.86	+1.8
3,576,724	+		Sama_3003	0.86	-2.0
3,576,724	+		Sama_3003	0.86	+2.9
3,576,725	-		Sama_3003	0.86	+1.8
3,576,725	-		Sama_3003	0.86	-0.5
3,576,725	-		Sama_3003	0.86	+0.6
3,576,781	+				-1.4
3,576,782	-				-0.0
3,576,788	+				-1.2
3,576,789	-				-1.0
3,576,822	+				-0.1
3,576,822	+				+0.6
3,576,823	-				+0.9
3,576,862	-				+1.6
3,576,879	+				+2.9
3,576,880	-				-0.8
3,576,945	-				-1.1
3,576,945	-				-1.1
3,576,958	+				+0.7
3,576,958	+				+2.5
3,576,958	+				-1.6
3,576,959	-				+0.1
3,576,959	-				+4.5
3,576,964	-				-2.6
3,576,972	+				+1.3
3,577,068	+				+1.4
3,577,069	-				+1.1
3,577,082	-				+1.5
3,577,102	+				-0.1
3,577,102	+				-0.6
3,577,192	-				-0.9
3,577,195	+				-1.8
3,577,196	-				+1.1
3,577,273	-				-0.9
3,577,285	+				+0.9
3,577,296	-		Sama_3004	0.11	+0.4
3,577,346	+		Sama_3004	0.19	+1.9
3,577,346	+		Sama_3004	0.19	-0.6
3,577,346	+		Sama_3004	0.19	+1.4
3,577,347	-		Sama_3004	0.19	-1.8
3,577,347	-		Sama_3004	0.19	-1.2
3,577,347	-		Sama_3004	0.19	-0.1
3,577,347	-		Sama_3004	0.19	-0.6
3,577,349	+		Sama_3004	0.20	-0.1
3,577,349	+		Sama_3004	0.20	-0.9
3,577,349	+		Sama_3004	0.20	-0.1
3,577,349	+		Sama_3004	0.20	+0.1
3,577,349	+		Sama_3004	0.20	-0.1
3,577,349	+		Sama_3004	0.20	+3.3
3,577,349	+		Sama_3004	0.20	-1.5
3,577,350	-		Sama_3004	0.20	-2.1
3,577,350	-		Sama_3004	0.20	-0.1
3,577,350	-		Sama_3004	0.20	-0.3
3,577,350	-		Sama_3004	0.20	-1.2
3,577,350	-		Sama_3004	0.20	-1.2
3,577,350	-		Sama_3004	0.20	+1.4
3,577,350	-		Sama_3004	0.20	-1.2
3,577,350	-		Sama_3004	0.20	-1.6
3,577,353	+		Sama_3004	0.20	+0.9
3,577,353	+		Sama_3004	0.20	+0.4
3,577,353	+		Sama_3004	0.20	-1.6
3,577,353	+		Sama_3004	0.20	-0.9
3,577,354	-		Sama_3004	0.21	-0.4
3,577,354	-		Sama_3004	0.21	-0.9
3,577,356	+		Sama_3004	0.21	-1.2
3,577,356	+		Sama_3004	0.21	-0.6
3,577,357	-		Sama_3004	0.21	+0.4
3,577,357	-		Sama_3004	0.21	-3.0
3,577,357	-		Sama_3004	0.21	+0.9
3,577,357	-		Sama_3004	0.21	-0.1
3,577,357	-		Sama_3004	0.21	-1.7
3,577,378	+		Sama_3004	0.24	-1.2
3,577,378	+		Sama_3004	0.24	-1.3
3,577,415	+		Sama_3004	0.30	-1.4
3,577,421	-		Sama_3004	0.31	-0.6
3,577,620	+		Sama_3004	0.62	-1.5