Strain Fitness in Shewanella amazonensis SB2B around Sama_2979

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
3,547,650	-		Sama_2977	0.46	-2.0
3,547,662	+		Sama_2977	0.48	-0.7
3,547,663	-		Sama_2977	0.48	+1.2
3,547,716	+		Sama_2977	0.57	-1.5
3,547,736	+		Sama_2977	0.60	+0.6
3,547,785	+		Sama_2977	0.68	+0.0
3,547,785	+		Sama_2977	0.68	+0.1
3,547,790	-		Sama_2977	0.69	+1.4
3,547,800	-		Sama_2977	0.71	-1.9
3,547,800	-		Sama_2977	0.71	+0.4
3,547,869	+		Sama_2977	0.82	-0.8
3,547,869	+		Sama_2977	0.82	-0.4
3,547,869	+		Sama_2977	0.82	-1.6
3,547,870	-		Sama_2977	0.82	-2.9
3,547,870	-		Sama_2977	0.82	+0.9
3,547,870	-		Sama_2977	0.82	+0.8
3,547,870	-		Sama_2977	0.82	-0.6
3,547,870	-		Sama_2977	0.82	-1.1
3,547,870	-		Sama_2977	0.82	+0.3
3,547,870	-		Sama_2977	0.82	-1.3
3,547,899	+		Sama_2977	0.87	-0.1
3,547,899	+		Sama_2977	0.87	+1.1
3,547,899	+		Sama_2977	0.87	+1.1
3,547,899	+		Sama_2977	0.87	-2.5
3,547,899	+		Sama_2977	0.87	+1.3
3,547,900	-		Sama_2977	0.87	+0.4
3,547,900	-		Sama_2977	0.87	-2.0
3,547,900	-		Sama_2977	0.87	-0.3
3,547,900	-		Sama_2977	0.87	+0.9
3,547,900	-		Sama_2977	0.87	+1.2
3,547,900	-		Sama_2977	0.87	-1.1
3,547,900	-		Sama_2977	0.87	+2.7
3,547,900	-		Sama_2977	0.87	-2.4
3,547,900	-		Sama_2977	0.87	-1.6
3,547,900	-		Sama_2977	0.87	-0.5
3,547,900	-		Sama_2977	0.87	-0.6
3,547,938	+				-0.4
3,547,938	+				+1.9
3,547,939	-				-1.8
3,547,962	+				-1.1
3,547,962	+				-0.4
3,547,962	+				-0.9
3,547,962	+				+0.8
3,547,962	+				-0.8
3,547,963	-				+0.4
3,547,963	-				+2.1
3,547,963	-				-0.4
3,547,967	+				-0.5
3,547,967	+				-1.2
3,547,968	-				-1.5
3,547,968	-				-2.5
3,547,968	-				-1.1
3,547,968	-				-0.5
3,547,968	-				-1.6
3,547,983	+				-2.5
3,547,983	+				+0.5
3,548,015	+				-2.0
3,548,015	+				+0.4
3,548,015	+				-1.1
3,548,015	+				+1.3
3,548,015	+				-0.9
3,548,015	+				+0.2
3,548,015	+				-1.3
3,548,015	+				+2.8
3,548,015	+				-1.2
3,548,016	-				+1.2
3,548,016	-				-0.6
3,548,016	-				-2.1
3,548,016	-				-2.1
3,548,016	-				-0.4
3,548,016	-				-0.5
3,548,016	-				-2.8
3,548,020	+				+0.2
3,548,021	-				-0.6
3,548,032	+				+0.2
3,548,091	+		Sama_2978	0.16	+0.6
3,548,092	-		Sama_2978	0.17	-1.8
3,548,092	-		Sama_2978	0.17	-0.8
3,548,092	-		Sama_2978	0.17	-1.4
3,548,092	-		Sama_2978	0.17	-1.1
3,548,185	+		Sama_2978	0.31	-1.1
3,548,185	+		Sama_2978	0.31	-0.3
3,548,185	+		Sama_2978	0.31	-0.7
3,548,185	+		Sama_2978	0.31	-1.9
3,548,185	+		Sama_2978	0.31	+3.5
3,548,186	-		Sama_2978	0.32	-0.4
3,548,186	-		Sama_2978	0.32	+0.2
3,548,278	+		Sama_2978	0.46	-1.4
3,548,278	+		Sama_2978	0.46	+2.3
3,548,278	+		Sama_2978	0.46	-2.1
3,548,278	+		Sama_2978	0.46	-2.9
3,548,278	+		Sama_2978	0.46	-0.2
3,548,278	+		Sama_2978	0.46	+0.9
3,548,278	+		Sama_2978	0.46	-0.5
3,548,279	-		Sama_2978	0.46	+1.1
3,548,279	-		Sama_2978	0.46	-0.1
3,548,279	-		Sama_2978	0.46	-1.1
3,548,324	+		Sama_2978	0.54	+0.1
3,548,325	-		Sama_2978	0.54	-1.8
3,548,353	+		Sama_2978	0.58	-1.8
3,548,354	-		Sama_2978	0.58	-1.1
3,548,419	+		Sama_2978	0.69	-0.1
3,548,419	+		Sama_2978	0.69	-1.6
3,548,420	-		Sama_2978	0.69	-1.4
3,548,440	+		Sama_2978	0.72	+1.4
3,548,441	-		Sama_2978	0.72	+0.2
3,548,509	+		Sama_2978	0.83	+1.3
3,548,509	+		Sama_2978	0.83	-1.4
3,548,510	-		Sama_2978	0.83	-0.6
3,548,510	-		Sama_2978	0.83	-0.2
3,548,510	-		Sama_2978	0.83	-0.9
3,548,600	+				+2.9
3,548,600	+				+0.4
3,548,603	+				+0.3
3,548,603	+				+0.8
3,548,603	+				+0.7
3,548,603	+				-0.1
3,548,604	-				-0.6
3,548,604	-				-0.9
3,548,850	-		Sama_2979	0.31	+0.4
3,548,850	-		Sama_2979	0.31	-0.5
3,548,884	+		Sama_2979	0.35	-1.8
3,548,938	+		Sama_2979	0.42	-0.5
3,548,942	+		Sama_2979	0.43	-0.6
3,548,942	+		Sama_2979	0.43	+1.5
3,548,943	-		Sama_2979	0.43	-0.9
3,548,965	+		Sama_2979	0.46	-2.1
3,549,113	-		Sama_2979	0.65	-0.6
3,549,113	-		Sama_2979	0.65	-3.1
3,549,159	+		Sama_2979	0.71	-1.6
3,549,159	+		Sama_2979	0.71	+0.3
3,549,159	+		Sama_2979	0.71	+0.4
3,549,159	+		Sama_2979	0.71	-0.4
3,549,159	+		Sama_2979	0.71	+1.1
3,549,160	-		Sama_2979	0.71	-1.2
3,549,308	+				+1.1
3,549,308	+				+2.1
3,549,308	+				-0.4
3,549,309	-				+0.9
3,549,309	-				+1.7
3,549,371	+				-0.3
3,549,372	-				+1.1
3,549,504	+		Sama_2980	0.11	-0.4
3,549,560	+		Sama_2980	0.16	-1.1
3,549,560	+		Sama_2980	0.16	-3.6
3,549,561	-		Sama_2980	0.16	+1.1
3,549,588	+		Sama_2980	0.18	-3.1
3,549,588	+		Sama_2980	0.18	+0.3
3,549,712	+		Sama_2980	0.28	-1.1
3,549,713	-		Sama_2980	0.28	-1.5
3,549,713	-		Sama_2980	0.28	-1.4
3,549,713	-		Sama_2980	0.28	-2.2
3,549,713	-		Sama_2980	0.28	-1.1
3,549,713	-		Sama_2980	0.28	-2.6
3,549,753	+		Sama_2980	0.32	-1.1
3,549,753	+		Sama_2980	0.32	-2.5
3,549,753	+		Sama_2980	0.32	-0.4
3,549,754	-		Sama_2980	0.32	-1.7
3,549,754	-		Sama_2980	0.32	-1.0
3,549,754	-		Sama_2980	0.32	-2.2
3,549,754	-		Sama_2980	0.32	-0.0
3,549,754	-		Sama_2980	0.32	+0.9
3,549,820	+		Sama_2980	0.37	+0.9
3,549,820	+		Sama_2980	0.37	-1.2
3,549,820	+		Sama_2980	0.37	+0.3
3,549,821	-		Sama_2980	0.37	+1.1
3,549,821	-		Sama_2980	0.37	+0.4
3,549,821	-		Sama_2980	0.37	-1.8
3,549,861	-		Sama_2980	0.40	+0.9
3,549,869	+		Sama_2980	0.41	-2.4
3,549,926	+		Sama_2980	0.46	+2.1
3,549,927	-		Sama_2980	0.46	-0.3
3,549,927	-		Sama_2980	0.46	-1.1
3,549,927	-		Sama_2980	0.46	-1.4
3,549,957	+		Sama_2980	0.48	+1.2
3,549,983	+		Sama_2980	0.50	-3.4
3,549,983	+		Sama_2980	0.50	-0.4
3,549,984	-		Sama_2980	0.51	-0.4
3,549,984	-		Sama_2980	0.51	-1.8
3,549,988	-		Sama_2980	0.51	+2.2
3,549,988	-		Sama_2980	0.51	-2.3
3,549,988	-		Sama_2980	0.51	-1.1
3,550,025	+		Sama_2980	0.54	-2.1
3,550,025	+		Sama_2980	0.54	+0.5
3,550,026	-		Sama_2980	0.54	+0.7
3,550,224	-		Sama_2980	0.70	+1.8
3,550,235	+		Sama_2980	0.71	+1.1
3,550,236	-		Sama_2980	0.71	-2.2
3,550,238	+		Sama_2980	0.71	-0.1
3,550,238	+		Sama_2980	0.71	-0.5
3,550,308	-		Sama_2980	0.77	+0.7
3,550,326	+		Sama_2980	0.79	-1.8
3,550,326	+		Sama_2980	0.79	-0.7
3,550,326	+		Sama_2980	0.79	+1.1
3,550,326	+		Sama_2980	0.79	-0.2
3,550,351	+		Sama_2980	0.81	+1.3
3,550,380	+		Sama_2980	0.83	-0.6
3,550,380	+		Sama_2980	0.83	-0.9
3,550,380	+		Sama_2980	0.83	+0.4
3,550,380	+		Sama_2980	0.83	-3.0