Strain Fitness in Shewanella amazonensis SB2B around Sama_2921

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
3,472,352	+		Sama_2920	0.42	+0.3
3,472,353	-		Sama_2920	0.42	+0.9
3,472,355	+		Sama_2920	0.42	-0.5
3,472,356	-		Sama_2920	0.42	-1.7
3,472,356	-		Sama_2920	0.42	+0.7
3,472,386	+		Sama_2920	0.45	+0.9
3,472,386	+		Sama_2920	0.45	-1.0
3,472,386	+		Sama_2920	0.45	+0.1
3,472,387	-		Sama_2920	0.45	-0.9
3,472,387	-		Sama_2920	0.45	-0.9
3,472,387	-		Sama_2920	0.45	-1.0
3,472,418	+		Sama_2920	0.47	-0.3
3,472,418	+		Sama_2920	0.47	-0.6
3,472,418	+		Sama_2920	0.47	-0.9
3,472,419	-		Sama_2920	0.47	+3.4
3,472,419	-		Sama_2920	0.47	-0.6
3,472,419	-		Sama_2920	0.47	+0.7
3,472,423	+		Sama_2920	0.48	-0.7
3,472,423	+		Sama_2920	0.48	+2.5
3,472,424	-		Sama_2920	0.48	-2.3
3,472,424	-		Sama_2920	0.48	-0.1
3,472,568	-		Sama_2920	0.60	+1.9
3,472,568	-		Sama_2920	0.60	-2.0
3,472,568	-		Sama_2920	0.60	-1.5
3,472,662	+		Sama_2920	0.69	+1.4
3,472,777	+		Sama_2920	0.79	+1.6
3,472,777	+		Sama_2920	0.79	-1.3
3,472,808	+		Sama_2920	0.81	+0.5
3,472,808	+		Sama_2920	0.81	-1.1
3,472,809	-		Sama_2920	0.81	+2.6
3,472,809	-		Sama_2920	0.81	-0.3
3,472,809	-		Sama_2920	0.81	+0.9
3,472,809	-		Sama_2920	0.81	+2.9
3,472,809	-		Sama_2920	0.81	-0.6
3,472,809	-		Sama_2920	0.81	-0.9
3,472,809	-		Sama_2920	0.81	-2.3
3,472,809	-		Sama_2920	0.81	+1.2
3,472,891	+		Sama_2920	0.89	+0.4
3,472,891	+		Sama_2920	0.89	-0.8
3,472,892	-		Sama_2920	0.89	-1.5
3,472,892	-		Sama_2920	0.89	-1.3
3,472,893	+		Sama_2920	0.89	+0.9
3,472,893	+		Sama_2920	0.89	-0.1
3,472,893	+		Sama_2920	0.89	-0.4
3,472,893	+		Sama_2920	0.89	+0.9
3,472,893	+		Sama_2920	0.89	+0.9
3,472,931	+				-2.5
3,472,932	-				-0.2
3,472,932	-				-0.5
3,472,939	+				+0.2
3,472,939	+				-0.4
3,472,940	-				+1.4
3,472,963	+				+1.1
3,472,963	+				+0.3
3,472,963	+				-0.7
3,472,963	+				-3.0
3,472,963	+				+1.3
3,472,977	-				-1.7
3,473,088	+				-0.4
3,473,088	+				+0.3
3,473,118	+				+0.3
3,473,139	+				+0.9
3,473,211	+				-1.4
3,473,211	+				+2.3
3,473,223	+				-1.9
3,473,224	-				+0.2
3,473,224	-				+0.3
3,473,224	-				+0.0
3,473,232	+				-0.7
3,473,236	+				+1.0
3,473,236	+				-0.4
3,473,236	+				-2.2
3,473,237	-				+2.1
3,473,237	-				-1.7
3,473,293	-				-0.9
3,473,300	-				-1.7
3,473,413	+				-1.2
3,473,418	+				+1.5
3,473,469	+		Sama_2921	0.10	-0.2
3,473,469	+		Sama_2921	0.10	+1.2
3,473,485	+		Sama_2921	0.11	-1.4
3,473,485	+		Sama_2921	0.11	+2.4
3,473,485	+		Sama_2921	0.11	-0.5
3,473,486	-		Sama_2921	0.12	+1.6
3,473,486	-		Sama_2921	0.12	+1.0
3,473,487	+		Sama_2921	0.12	+0.5
3,473,488	-		Sama_2921	0.12	-1.8
3,473,488	-		Sama_2921	0.12	+0.6
3,473,545	-		Sama_2921	0.16	-0.0
3,473,568	+		Sama_2921	0.18	-1.0
3,473,569	-		Sama_2921	0.18	+1.1
3,473,581	-		Sama_2921	0.19	-1.4
3,473,581	-		Sama_2921	0.19	+1.2
3,473,630	-		Sama_2921	0.22	+1.2
3,473,634	+		Sama_2921	0.22	+0.6
3,473,655	+		Sama_2921	0.24	-0.6
3,473,656	-		Sama_2921	0.24	+2.1
3,473,656	-		Sama_2921	0.24	-1.1
3,473,725	-		Sama_2921	0.29	-1.5
3,473,742	+		Sama_2921	0.30	-1.1
3,473,742	+		Sama_2921	0.30	-1.2
3,473,742	+		Sama_2921	0.30	+0.4
3,473,742	+		Sama_2921	0.30	-1.8
3,473,742	+		Sama_2921	0.30	-1.9
3,473,742	+		Sama_2921	0.30	-3.2
3,473,743	-		Sama_2921	0.30	+0.2
3,473,743	-		Sama_2921	0.30	-1.0
3,473,743	-		Sama_2921	0.30	-0.3
3,473,743	-		Sama_2921	0.30	-0.7
3,473,839	+		Sama_2921	0.38	+2.6
3,473,885	-		Sama_2921	0.41	-0.7
3,473,918	-		Sama_2921	0.43	+1.9
3,473,918	-		Sama_2921	0.43	-1.7
3,473,947	+		Sama_2921	0.46	-0.4
3,473,947	+		Sama_2921	0.46	+1.2
3,473,947	+		Sama_2921	0.46	+0.7
3,473,947	+		Sama_2921	0.46	+1.8
3,473,948	-		Sama_2921	0.46	-0.1
3,473,948	-		Sama_2921	0.46	-1.7
3,473,979	+		Sama_2921	0.48	-1.5
3,474,026	+		Sama_2921	0.51	+1.5
3,474,026	+		Sama_2921	0.51	+0.1
3,474,026	+		Sama_2921	0.51	-0.4
3,474,026	+		Sama_2921	0.51	+0.7
3,474,027	-		Sama_2921	0.51	+0.5
3,474,027	-		Sama_2921	0.51	+0.7
3,474,044	+		Sama_2921	0.53	-1.1
3,474,045	-		Sama_2921	0.53	+2.3
3,474,072	-		Sama_2921	0.55	+3.7
3,474,096	-		Sama_2921	0.56	+1.9
3,474,096	-		Sama_2921	0.56	+0.9
3,474,096	-		Sama_2921	0.56	+0.6
3,474,123	+		Sama_2921	0.58	-0.5
3,474,124	-		Sama_2921	0.59	-3.2
3,474,126	+		Sama_2921	0.59	+0.5
3,474,126	+		Sama_2921	0.59	-0.8
3,474,126	+		Sama_2921	0.59	-1.3
3,474,127	-		Sama_2921	0.59	+1.1
3,474,127	-		Sama_2921	0.59	-1.5
3,474,127	-		Sama_2921	0.59	-0.5
3,474,127	-		Sama_2921	0.59	-0.7
3,474,199	+		Sama_2921	0.64	-0.2
3,474,200	-		Sama_2921	0.64	-0.1
3,474,200	-		Sama_2921	0.64	-0.5
3,474,200	-		Sama_2921	0.64	-0.5
3,474,259	-		Sama_2921	0.69	-0.1
3,474,305	+		Sama_2921	0.72	-0.9
3,474,305	+		Sama_2921	0.72	+1.4
3,474,306	-		Sama_2921	0.72	-0.6
3,474,306	-		Sama_2921	0.72	-2.3
3,474,306	-		Sama_2921	0.72	-0.1
3,474,306	-		Sama_2921	0.72	+1.1
3,474,430	-		Sama_2921	0.81	-0.7
3,474,430	-		Sama_2921	0.81	+1.5
3,474,465	-		Sama_2921	0.84	-0.1
3,474,465	-		Sama_2921	0.84	-0.4
3,474,465	-		Sama_2921	0.84	+1.6
3,474,465	-		Sama_2921	0.84	-1.9
3,474,465	-		Sama_2921	0.84	-1.9
3,474,465	-		Sama_2921	0.84	-2.0
3,474,465	-		Sama_2921	0.84	+0.4
3,474,466	+		Sama_2921	0.84	-1.2
3,474,466	+		Sama_2921	0.84	+0.8
3,474,467	-		Sama_2921	0.84	+0.5
3,474,485	-		Sama_2921	0.85	+0.2
3,474,485	-		Sama_2921	0.85	-1.2
3,474,485	-		Sama_2921	0.85	+0.2
3,474,533	-		Sama_2921	0.89	+1.5
3,474,613	+				+0.9
3,474,613	+				-1.7
3,474,613	+				-0.5
3,474,614	-				+2.0
3,474,659	+				-0.6
3,474,659	+				-1.2
3,474,659	+				+0.1
3,474,659	+				-1.5
3,474,659	+				-1.7
3,474,659	+				-2.1
3,474,660	-				-1.8
3,474,660	-				-1.1
3,474,660	-				-0.1
3,474,660	-				-0.4
3,474,660	-				-1.5
3,474,680	-				+0.8
3,474,680	-				-0.7
3,474,703	+				-0.3
3,474,715	+				+0.7
3,474,716	-				-1.4
3,474,716	-				-0.8
3,474,732	+				+1.8
3,474,733	-				+0.5
3,474,733	-				-2.0
3,474,781	+				+1.3
3,474,781	+				-2.2
3,474,781	+				+0.1
3,474,781	+				-0.7
3,474,782	-				+1.7
3,474,782	-				-1.1
3,474,836	+				-0.4
3,474,836	+				-0.2
3,474,845	-				+0.7
3,474,871	+				-1.5
3,474,871	+				-2.1
3,474,886	+				-0.4
3,474,967	-				+1.2
3,475,034	+		Sama_2922	0.11	+1.1
3,475,035	-		Sama_2922	0.11	-2.8
3,475,053	+		Sama_2922	0.11	+0.3
3,475,053	+		Sama_2922	0.11	+2.5
3,475,054	-		Sama_2922	0.11	+1.4
3,475,054	-		Sama_2922	0.11	+0.7
3,475,142	+		Sama_2922	0.16	-3.2
3,475,143	-		Sama_2922	0.16	+1.3
3,475,165	-		Sama_2922	0.17	-2.4
3,475,165	-		Sama_2922	0.17	-2.0
3,475,165	-		Sama_2922	0.17	-0.4
3,475,165	-		Sama_2922	0.17	+0.6
3,475,167	+		Sama_2922	0.17	+0.1
3,475,200	-		Sama_2922	0.18	+0.2
3,475,205	-		Sama_2922	0.19	-0.9
3,475,266	+		Sama_2922	0.21	-0.3
3,475,267	-		Sama_2922	0.21	-0.1
3,475,275	+		Sama_2922	0.22	-1.0
3,475,276	-		Sama_2922	0.22	+1.9
3,475,284	+		Sama_2922	0.22	+2.6
3,475,284	+		Sama_2922	0.22	-0.7
3,475,287	+		Sama_2922	0.22	+0.3
3,475,300	-		Sama_2922	0.23	+0.7
3,475,300	-		Sama_2922	0.23	-1.7
3,475,300	-		Sama_2922	0.23	+1.5
3,475,311	-		Sama_2922	0.23	+0.1
3,475,311	-		Sama_2922	0.23	-0.6
3,475,317	+		Sama_2922	0.24	+0.5
3,475,380	-		Sama_2922	0.27	+1.2
3,475,458	+		Sama_2922	0.30	-2.9
3,475,485	-		Sama_2922	0.32	+0.8
3,475,498	-		Sama_2922	0.32	-1.5
3,475,536	-		Sama_2922	0.34	-0.2
3,475,635	+		Sama_2922	0.39	+1.8