Strain Fitness in Shewanella amazonensis SB2B around Sama_2807

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
3,345,309	+		Sama_2805	0.78	-1.0
3,345,309	+		Sama_2805	0.78	-0.7
3,345,309	+		Sama_2805	0.78	+1.5
3,345,309	+		Sama_2805	0.78	+0.2
3,345,310	-		Sama_2805	0.78	-0.9
3,345,310	-		Sama_2805	0.78	+0.4
3,345,313	+		Sama_2805	0.78	-0.3
3,345,313	+		Sama_2805	0.78	-0.4
3,345,313	+		Sama_2805	0.78	-0.6
3,345,314	-		Sama_2805	0.78	+1.7
3,345,314	-		Sama_2805	0.78	-1.1
3,345,360	+		Sama_2805	0.82	-1.4
3,345,364	-		Sama_2805	0.83	+0.9
3,345,376	+		Sama_2805	0.84	+0.8
3,345,383	+		Sama_2805	0.84	-1.6
3,345,383	+		Sama_2805	0.84	-0.1
3,345,384	-		Sama_2805	0.84	-0.7
3,345,405	-		Sama_2805	0.86	-2.3
3,345,416	+		Sama_2805	0.87	-1.2
3,345,416	+		Sama_2805	0.87	+0.7
3,345,416	+		Sama_2805	0.87	-0.4
3,345,452	-				+1.9
3,345,475	+				-1.3
3,345,476	-				-1.6
3,345,510	+				-2.6
3,345,510	+				-0.4
3,345,510	+				-2.4
3,345,510	+				+1.7
3,345,511	-				+1.2
3,345,511	-				-1.0
3,345,511	-				+1.9
3,345,511	-				+0.5
3,345,514	+				+0.2
3,345,514	+				+1.0
3,345,515	-				-0.1
3,345,515	-				+0.5
3,345,515	-				+1.1
3,345,515	-				-1.6
3,345,536	+				-2.6
3,345,536	+				-0.7
3,345,537	-				-2.0
3,345,537	-				-1.8
3,345,537	-				-1.6
3,345,546	+				+0.5
3,345,546	+				+1.0
3,345,553	+				-0.1
3,345,566	-				+0.0
3,345,725	+		Sama_2806	0.43	-1.4
3,345,726	-		Sama_2806	0.43	+0.6
3,345,783	-		Sama_2806	0.58	+1.6
3,345,806	+		Sama_2806	0.64	+0.1
3,345,807	-		Sama_2806	0.64	-0.3
3,345,807	-		Sama_2806	0.64	-0.9
3,345,834	-		Sama_2806	0.71	-3.9
3,345,876	-		Sama_2806	0.83	-1.6
3,345,883	+		Sama_2806	0.84	-1.8
3,345,894	+		Sama_2806	0.87	-0.4
3,345,894	+		Sama_2806	0.87	+2.6
3,345,895	-		Sama_2806	0.88	-0.4
3,345,895	-		Sama_2806	0.88	-1.2
3,345,895	-		Sama_2806	0.88	+0.7
3,345,915	+				+0.1
3,345,915	+				-2.8
3,345,915	+				+1.2
3,345,915	+				+0.1
3,345,916	-				-2.0
3,345,916	-				-1.6
3,345,928	+				-2.0
3,345,929	-				-1.3
3,345,945	+				-2.3
3,345,945	+				-1.4
3,345,945	+				-1.4
3,345,945	+				+1.1
3,345,968	-				-1.2
3,345,968	-				-0.3
3,346,072	+				+1.9
3,346,072	+				-1.9
3,346,072	+				-1.0
3,346,115	+				+0.3
3,346,115	+				-1.4
3,346,115	+				-0.7
3,346,115	+				-1.3
3,346,116	-				-1.8
3,346,132	+				-1.2
3,346,155	+				+0.5
3,346,156	-				-0.3
3,346,205	+				+1.0
3,346,206	-				+2.6
3,346,206	-				-0.0
3,346,213	+				-2.3
3,346,213	+				+0.6
3,346,213	+				-2.0
3,346,214	-				+1.2
3,346,214	-				-0.2
3,346,288	+	purT	Sama_2807	0.13	-1.6
3,346,289	-	purT	Sama_2807	0.13	-0.9
3,346,289	-	purT	Sama_2807	0.13	+0.3
3,346,313	+	purT	Sama_2807	0.15	-0.4
3,346,313	+	purT	Sama_2807	0.15	+0.1
3,346,313	+	purT	Sama_2807	0.15	-3.0
3,346,313	+	purT	Sama_2807	0.15	-1.7
3,346,314	-	purT	Sama_2807	0.15	+0.7
3,346,314	-	purT	Sama_2807	0.15	-2.0
3,346,314	-	purT	Sama_2807	0.15	-2.1
3,346,483	+	purT	Sama_2807	0.29	-1.9
3,346,483	+	purT	Sama_2807	0.29	-0.7
3,346,484	-	purT	Sama_2807	0.29	-0.8
3,346,527	+	purT	Sama_2807	0.33	+0.9
3,346,527	+	purT	Sama_2807	0.33	-1.6
3,346,527	+	purT	Sama_2807	0.33	-3.3
3,346,527	+	purT	Sama_2807	0.33	+0.7
3,346,527	+	purT	Sama_2807	0.33	+1.9
3,346,527	+	purT	Sama_2807	0.33	-0.5
3,346,527	+	purT	Sama_2807	0.33	+0.3
3,346,527	+	purT	Sama_2807	0.33	-1.6
3,346,527	+	purT	Sama_2807	0.33	+0.9
3,346,527	+	purT	Sama_2807	0.33	-1.6
3,346,527	+	purT	Sama_2807	0.33	+0.2
3,346,528	-	purT	Sama_2807	0.33	+2.3
3,346,528	-	purT	Sama_2807	0.33	+1.7
3,346,528	-	purT	Sama_2807	0.33	+2.6
3,346,528	-	purT	Sama_2807	0.33	-1.7
3,346,528	-	purT	Sama_2807	0.33	+0.3
3,346,528	-	purT	Sama_2807	0.33	+0.9
3,346,528	-	purT	Sama_2807	0.33	+3.7
3,346,604	+	purT	Sama_2807	0.39	+0.5
3,346,604	+	purT	Sama_2807	0.39	-2.0
3,346,604	+	purT	Sama_2807	0.39	-1.1
3,346,605	-	purT	Sama_2807	0.39	-0.2
3,346,655	-	purT	Sama_2807	0.44	-0.5
3,346,672	-	purT	Sama_2807	0.45	-2.9
3,346,709	+	purT	Sama_2807	0.48	-1.6
3,346,775	+	purT	Sama_2807	0.54	-1.3
3,346,775	+	purT	Sama_2807	0.54	+1.6
3,346,776	-	purT	Sama_2807	0.54	-2.0
3,346,776	-	purT	Sama_2807	0.54	-1.9
3,346,776	-	purT	Sama_2807	0.54	+1.1
3,346,776	-	purT	Sama_2807	0.54	+2.9
3,346,795	+	purT	Sama_2807	0.56	-1.4
3,346,796	-	purT	Sama_2807	0.56	-3.0
3,346,868	+	purT	Sama_2807	0.62	-1.5
3,346,869	-	purT	Sama_2807	0.62	-0.0
3,346,897	+	purT	Sama_2807	0.64	+1.8
3,346,897	+	purT	Sama_2807	0.64	+1.4
3,346,898	-	purT	Sama_2807	0.64	+0.3
3,346,898	-	purT	Sama_2807	0.64	-2.2
3,346,940	+	purT	Sama_2807	0.68	+0.7
3,346,940	+	purT	Sama_2807	0.68	-0.9
3,346,940	+	purT	Sama_2807	0.68	+1.3
3,346,941	-	purT	Sama_2807	0.68	+1.7
3,346,941	-	purT	Sama_2807	0.68	+2.7
3,346,959	+	purT	Sama_2807	0.69	-0.4
3,346,959	+	purT	Sama_2807	0.69	+0.3
3,346,959	+	purT	Sama_2807	0.69	+1.9
3,346,960	-	purT	Sama_2807	0.70	+0.7
3,346,960	-	purT	Sama_2807	0.70	-0.5
3,346,960	-	purT	Sama_2807	0.70	+0.4
3,346,960	-	purT	Sama_2807	0.70	-2.2
3,346,972	+	purT	Sama_2807	0.71	+0.9
3,346,972	+	purT	Sama_2807	0.71	+2.0
3,346,973	-	purT	Sama_2807	0.71	-1.4
3,346,998	-	purT	Sama_2807	0.73	+1.2
3,347,023	+	purT	Sama_2807	0.75	+1.0
3,347,023	+	purT	Sama_2807	0.75	-0.3
3,347,024	-	purT	Sama_2807	0.75	+2.0
3,347,136	-	purT	Sama_2807	0.84	-0.9
3,347,136	-	purT	Sama_2807	0.84	-0.2
3,347,143	-	purT	Sama_2807	0.85	+0.1
3,347,177	+	purT	Sama_2807	0.88	-0.7
3,347,177	+	purT	Sama_2807	0.88	+2.3
3,347,249	+				+0.3
3,347,257	+				-2.8
3,347,257	+				-2.4
3,347,257	+				-1.1
3,347,257	+				-2.4
3,347,257	+				-0.4
3,347,257	+				+1.6
3,347,257	+				-1.4
3,347,257	+				+1.6
3,347,257	+				+0.3
3,347,258	-				+2.1
3,347,258	-				-2.1
3,347,258	-				+0.1
3,347,258	-				+0.5
3,347,258	-				+0.4
3,347,297	+				-1.0
3,347,297	+				-1.3
3,347,298	-				-1.4
3,347,298	-				-0.1
3,347,298	-				-0.8
3,347,312	+				-0.2
3,347,313	-				-2.0
3,347,313	-				-2.2
3,347,313	-				+0.2
3,347,313	-				+0.2
3,347,313	-				+1.6
3,347,316	+				-1.4
3,347,316	+				+1.3
3,347,317	-				+1.8
3,347,317	-				-0.4
3,347,317	-				-0.1
3,347,317	-				-2.6
3,347,317	-				-0.0
3,347,317	-				+1.3
3,347,329	-				-0.4
3,347,329	-				+1.3
3,347,329	-				+0.3
3,347,332	+				-2.9
3,347,332	+				+0.3
3,347,332	+				-0.2
3,347,332	+				+0.5
3,347,333	-				+1.1
3,347,333	-				-0.0
3,347,333	-				+0.7
3,347,333	-				-2.1
3,347,333	-				-0.1
3,347,345	-				-0.2
3,347,361	-				-1.8
3,347,416	+				-2.6
3,347,417	-				+2.2
3,347,417	-				+0.8
3,347,417	-				-0.3
3,347,417	-				+0.3
3,347,434	+				-1.0
3,347,435	-				-0.9
3,347,435	-				+0.3
3,347,486	+				-2.0
3,347,486	+				-1.1
3,347,486	+				-1.0
3,347,487	-				+1.6
3,347,487	-				-0.7
3,347,487	-				-0.2
3,347,487	-				+1.9
3,347,521	-				-0.9
3,347,533	+				-1.2
3,347,533	+				-0.9
3,347,533	+				-0.9
3,347,534	-				-2.3
3,347,534	-				+2.1
3,347,534	-				-1.4
3,347,534	-				-0.2
3,347,534	-				-0.1
3,347,547	+				-2.0
3,347,548	-				-0.2
3,347,556	+				-1.1
3,347,557	-				+0.9
3,347,557	-				+3.1
3,347,557	-				+1.2
3,347,557	-				+5.0
3,347,557	-				-1.1
3,347,557	-				+0.9
3,347,594	+				+2.1
3,347,595	-				-1.0
3,347,636	+				-0.7
3,347,640	+				-0.0
3,347,640	+				-0.6
3,347,640	+				+0.7
3,347,640	+				+2.1
3,347,640	+				-2.7
3,347,641	-				-0.8
3,347,641	-				-0.9
3,347,641	-				-1.3
3,347,701	+				+1.0
3,347,701	+				-2.0
3,347,701	+				+1.2
3,347,701	+				-0.4
3,347,701	+				-0.8
3,347,701	+				+1.0
3,347,701	+				-1.4
3,347,701	+				-1.5
3,347,701	+				+1.0
3,347,702	-		Sama_2808	0.10	+0.9
3,347,702	-		Sama_2808	0.10	-1.1
3,347,702	-		Sama_2808	0.10	-1.4
3,347,702	-		Sama_2808	0.10	+0.9
3,347,702	-		Sama_2808	0.10	+0.5
3,347,702	-		Sama_2808	0.10	+0.8
3,347,702	-		Sama_2808	0.10	+1.6
3,347,702	-		Sama_2808	0.10	+2.3
3,347,702	-		Sama_2808	0.10	-1.5
3,347,746	-		Sama_2808	0.17	+0.9
3,347,802	+		Sama_2808	0.27	-0.1
3,347,838	+		Sama_2808	0.33	-0.7
3,347,838	+		Sama_2808	0.33	-1.8
3,347,838	+		Sama_2808	0.33	-0.6
3,347,838	+		Sama_2808	0.33	-2.8
3,347,838	+		Sama_2808	0.33	+4.4
3,347,839	-		Sama_2808	0.33	+1.6
3,347,928	+		Sama_2808	0.47	+0.1
3,347,928	+		Sama_2808	0.47	-0.2
3,347,929	-		Sama_2808	0.48	-0.0
3,347,979	-		Sama_2808	0.56	-0.5
3,348,025	+		Sama_2808	0.63	-2.5
3,348,046	-		Sama_2808	0.67	-0.5
3,348,054	-		Sama_2808	0.68	-0.1
3,348,054	-		Sama_2808	0.68	-0.2
3,348,054	-		Sama_2808	0.68	-0.7
3,348,111	-		Sama_2808	0.78	-0.8
3,348,187	+				+0.5
3,348,189	+				-0.1
3,348,190	-				-0.6
3,348,190	-				+0.8
3,348,190	-				-0.1
3,348,223	+				-0.1
3,348,223	+				-0.7
3,348,223	+				+0.1
3,348,223	+				+0.4
3,348,223	+				+1.8
3,348,223	+				-1.4
3,348,223	+				+0.7
3,348,223	+				-1.3
3,348,223	+				+0.3
3,348,223	+				-2.0
3,348,223	+				-0.4
3,348,224	-				-0.7
3,348,224	-				-1.1
3,348,224	-				-1.7
3,348,224	-				+0.1
3,348,224	-				+0.9
3,348,224	-				-2.0
3,348,224	-				-0.3
3,348,288	+				-1.1
3,348,288	+				-1.3
3,348,289	-				+2.4
3,348,289	-				+2.4
3,348,292	+				+0.9
3,348,292	+				-1.6
3,348,292	+				+1.3
3,348,292	+				+0.6
3,348,292	+				-0.3
3,348,293	-				+0.4
3,348,293	-				-0.7
3,348,293	-				-0.6
3,348,293	-				+0.3
3,348,293	-				-0.3
3,348,293	-				-2.0
3,348,293	-				-1.0
3,348,293	-				-0.4
3,348,293	-				+3.0
3,348,293	-				-1.3