Strain Fitness in Shewanella amazonensis SB2B around Sama_2780

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
3,321,810	-		Sama_2779	0.35	+0.6
3,321,810	-		Sama_2779	0.35	+0.8
3,321,842	-		Sama_2779	0.37	-0.1
3,321,880	+		Sama_2779	0.41	-0.9
3,321,880	+		Sama_2779	0.41	-0.7
3,321,881	-		Sama_2779	0.41	-0.1
3,321,959	-		Sama_2779	0.48	-0.2
3,322,040	+		Sama_2779	0.55	-0.2
3,322,040	+		Sama_2779	0.55	+1.6
3,322,040	+		Sama_2779	0.55	-0.0
3,322,040	+		Sama_2779	0.55	-0.3
3,322,040	+		Sama_2779	0.55	+0.2
3,322,041	-		Sama_2779	0.55	-1.6
3,322,041	-		Sama_2779	0.55	+0.2
3,322,041	-		Sama_2779	0.55	-1.4
3,322,041	-		Sama_2779	0.55	-0.4
3,322,041	-		Sama_2779	0.55	+0.8
3,322,041	-		Sama_2779	0.55	-0.7
3,322,154	+		Sama_2779	0.65	+0.7
3,322,155	-		Sama_2779	0.65	+1.5
3,322,155	-		Sama_2779	0.65	+0.8
3,322,155	-		Sama_2779	0.65	+0.3
3,322,155	-		Sama_2779	0.65	+1.2
3,322,167	+		Sama_2779	0.66	-1.3
3,322,167	+		Sama_2779	0.66	+1.1
3,322,168	-		Sama_2779	0.66	-0.1
3,322,168	-		Sama_2779	0.66	-1.1
3,322,216	+		Sama_2779	0.70	-0.2
3,322,216	+		Sama_2779	0.70	-0.4
3,322,216	+		Sama_2779	0.70	-0.1
3,322,217	-		Sama_2779	0.70	+0.8
3,322,217	-		Sama_2779	0.70	-1.1
3,322,217	-		Sama_2779	0.70	+0.1
3,322,217	-		Sama_2779	0.70	-1.4
3,322,254	+		Sama_2779	0.74	+0.9
3,322,254	+		Sama_2779	0.74	+0.9
3,322,348	+		Sama_2779	0.82	+0.2
3,322,545	-				-1.8
3,322,552	+				-0.9
3,322,635	-				+0.7
3,322,659	-				-1.1
3,322,667	-				-0.8
3,322,692	-				-1.1
3,322,777	-		Sama_2780	0.13	-1.4
3,322,902	-		Sama_2780	0.27	+1.3
3,322,937	+		Sama_2780	0.31	-1.8
3,323,100	-		Sama_2780	0.50	+1.2
3,323,101	+		Sama_2780	0.50	+0.5
3,323,176	-		Sama_2780	0.59	-0.6
3,323,190	+		Sama_2780	0.60	-1.1
3,323,223	+		Sama_2780	0.64	-0.3
3,323,224	-		Sama_2780	0.64	-1.8
3,323,224	-		Sama_2780	0.64	+1.3
3,323,224	-		Sama_2780	0.64	-2.1
3,323,224	-		Sama_2780	0.64	+0.9
3,323,224	-		Sama_2780	0.64	+0.9
3,323,224	-		Sama_2780	0.64	-2.4
3,323,224	-		Sama_2780	0.64	-0.6
3,323,233	-		Sama_2780	0.65	-0.7
3,323,236	-		Sama_2780	0.66	+1.9
3,323,239	-		Sama_2780	0.66	-1.0
3,323,239	-		Sama_2780	0.66	+0.6
3,323,277	-		Sama_2780	0.70	+1.0
3,323,286	-		Sama_2780	0.71	+2.5
3,323,310	+		Sama_2780	0.74	+0.3
3,323,322	-		Sama_2780	0.76	-1.2
3,323,353	+		Sama_2780	0.79	+2.1
3,323,354	-		Sama_2780	0.79	+1.2
3,323,354	-		Sama_2780	0.79	+0.6
3,323,356	-		Sama_2780	0.79	-1.7
3,323,356	-		Sama_2780	0.79	-2.5
3,323,356	-		Sama_2780	0.79	-0.8
3,323,367	+		Sama_2780	0.81	-1.1
3,323,368	-		Sama_2780	0.81	-0.9
3,323,408	+		Sama_2780	0.85	-0.3
3,323,409	-		Sama_2780	0.86	+0.5
3,323,418	-		Sama_2780	0.87	-0.1
3,323,437	-		Sama_2780	0.89	-1.3
3,323,460	-				-0.9
3,323,460	-				-1.4
3,323,514	+				+1.9
3,323,523	+				-1.4
3,323,524	-				+1.2
3,323,535	-				+1.6
3,323,535	-				-0.9
3,323,579	+				-0.7
3,323,723	-		Sama_2781	0.25	+0.9
3,323,766	+		Sama_2781	0.31	-2.4
3,323,766	+		Sama_2781	0.31	-0.1
3,323,768	+		Sama_2781	0.31	+1.2
3,323,768	+		Sama_2781	0.31	+1.0
3,323,769	-		Sama_2781	0.31	-0.1
3,323,776	+		Sama_2781	0.32	-2.0
3,323,872	-		Sama_2781	0.45	+2.6
3,323,876	+		Sama_2781	0.45	-0.1
3,323,876	+		Sama_2781	0.45	+0.9
3,323,930	-		Sama_2781	0.52	-0.3
3,323,930	-		Sama_2781	0.52	+0.3
3,323,930	-		Sama_2781	0.52	+1.4
3,323,930	-		Sama_2781	0.52	+0.3
3,323,930	-		Sama_2781	0.52	-1.0
3,323,933	+		Sama_2781	0.53	-1.3
3,323,986	-		Sama_2781	0.60	+1.0
3,324,086	-		Sama_2781	0.73	-2.9
3,324,086	-		Sama_2781	0.73	+0.1
3,324,089	-		Sama_2781	0.73	+0.4
3,324,134	+		Sama_2781	0.79	+0.7
3,324,135	-		Sama_2781	0.79	+2.6
3,324,135	-		Sama_2781	0.79	-1.6
3,324,147	+		Sama_2781	0.81	+1.7
3,324,147	+		Sama_2781	0.81	+1.6
3,324,148	-		Sama_2781	0.81	-1.3
3,324,174	-		Sama_2781	0.84	-2.3
3,324,177	+		Sama_2781	0.85	-2.2
3,324,205	+		Sama_2781	0.88	+0.6
3,324,205	+		Sama_2781	0.88	-0.3
3,324,224	-				-1.3
3,324,224	-				+0.1
3,324,231	-				+2.5
3,324,231	-				+0.3
3,324,235	+				-0.6
3,324,235	+				-1.1
3,324,235	+				+0.4
3,324,244	+				-2.9
3,324,245	-				+0.9
3,324,253	+				-1.3
3,324,253	+				-1.9
3,324,253	+				-0.1
3,324,254	-				+1.3
3,324,254	-				+2.1
3,324,282	-				-0.3
3,324,296	+				+0.5
3,324,297	-				-0.6
3,324,304	+				-0.9
3,324,305	-				-1.8
3,324,320	-				+0.7
3,324,320	-				+0.3
3,324,332	-				-2.4
3,324,339	+				-0.5
3,324,349	-				+0.2
3,324,369	+				+0.1
3,324,370	-				+2.2
3,324,382	+				+1.6
3,324,383	-				+0.7
3,324,383	-				+0.4
3,324,516	+				+0.4
3,324,517	-				+0.6