Strain Fitness in Shewanella amazonensis SB2B around Sama_2685

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
3,213,321	+		Sama_2683	0.46	-0.3
3,213,321	+		Sama_2683	0.46	+0.3
3,213,321	+		Sama_2683	0.46	+0.0
3,213,370	+		Sama_2683	0.53	+1.6
3,213,370	+		Sama_2683	0.53	-2.0
3,213,371	-		Sama_2683	0.53	-0.9
3,213,371	-		Sama_2683	0.53	-1.8
3,213,371	-		Sama_2683	0.53	+0.1
3,213,371	-		Sama_2683	0.53	-1.5
3,213,375	-		Sama_2683	0.54	-1.8
3,213,375	-		Sama_2683	0.54	+0.1
3,213,375	-		Sama_2683	0.54	+0.5
3,213,384	-		Sama_2683	0.55	-1.4
3,213,438	+		Sama_2683	0.63	+0.8
3,213,439	-		Sama_2683	0.63	+2.4
3,213,449	+		Sama_2683	0.65	-0.4
3,213,449	+		Sama_2683	0.65	-1.1
3,213,449	+		Sama_2683	0.65	+1.6
3,213,449	+		Sama_2683	0.65	-2.4
3,213,450	-		Sama_2683	0.65	-0.5
3,213,450	-		Sama_2683	0.65	-1.4
3,213,450	-		Sama_2683	0.65	+1.9
3,213,450	-		Sama_2683	0.65	-2.7
3,213,450	-		Sama_2683	0.65	+0.8
3,213,450	-		Sama_2683	0.65	+1.2
3,213,450	-		Sama_2683	0.65	-1.8
3,213,450	-		Sama_2683	0.65	-0.1
3,213,450	-		Sama_2683	0.65	-0.7
3,213,450	-		Sama_2683	0.65	-1.3
3,213,462	-		Sama_2683	0.67	+0.7
3,213,482	-		Sama_2683	0.70	+0.1
3,213,482	-		Sama_2683	0.70	+0.0
3,213,548	+		Sama_2683	0.80	-0.9
3,213,548	+		Sama_2683	0.80	+0.1
3,213,549	-		Sama_2683	0.80	+0.6
3,213,609	-		Sama_2683	0.89	-1.9
3,213,609	-		Sama_2683	0.89	-2.7
3,213,609	-		Sama_2683	0.89	+1.2
3,213,616	+				+1.4
3,213,616	+				+1.1
3,213,616	+				-1.5
3,213,617	-				-1.1
3,213,617	-				+0.1
3,213,617	-				+1.5
3,213,644	-				+0.6
3,213,658	+				-0.3
3,213,658	+				+0.7
3,213,659	-				+0.3
3,213,661	+				-0.7
3,213,662	-				+0.5
3,213,662	-				+1.2
3,213,677	+				+2.2
3,213,703	+				-1.0
3,213,703	+				+1.1
3,213,703	+				+0.3
3,213,703	+				+0.9
3,213,704	-				-0.3
3,213,704	-				-0.4
3,213,704	-				-1.1
3,213,704	-				+1.4
3,213,778	+		Sama_2684	0.12	-1.1
3,213,863	+		Sama_2684	0.30	+1.4
3,213,863	+		Sama_2684	0.30	+0.1
3,213,863	+		Sama_2684	0.30	-1.7
3,213,863	+		Sama_2684	0.30	-0.9
3,213,863	+		Sama_2684	0.30	+0.1
3,213,863	+		Sama_2684	0.30	+0.3
3,213,863	+		Sama_2684	0.30	-1.1
3,213,863	+		Sama_2684	0.30	-2.5
3,213,863	+		Sama_2684	0.30	-0.9
3,213,864	-		Sama_2684	0.30	-0.9
3,213,864	-		Sama_2684	0.30	-0.6
3,213,864	-		Sama_2684	0.30	-0.7
3,213,864	-		Sama_2684	0.30	+0.9
3,213,887	+		Sama_2684	0.35	-0.3
3,213,949	+		Sama_2684	0.48	+1.2
3,213,949	+		Sama_2684	0.48	+0.8
3,213,950	-		Sama_2684	0.48	+1.9
3,213,950	-		Sama_2684	0.48	+0.8
3,213,950	-		Sama_2684	0.48	-3.0
3,213,950	-		Sama_2684	0.48	+1.7
3,214,253	+				+0.9
3,214,253	+				+1.2
3,214,254	-				+1.2
3,214,317	+				-1.9
3,214,318	-				-1.5
3,214,447	+		Sama_2685	0.19	+0.7
3,214,477	+		Sama_2685	0.23	-1.8
3,214,477	+		Sama_2685	0.23	+0.0
3,214,477	+		Sama_2685	0.23	+0.7
3,214,477	+		Sama_2685	0.23	-1.6
3,214,478	-		Sama_2685	0.23	-0.4
3,214,478	-		Sama_2685	0.23	-1.2
3,214,478	-		Sama_2685	0.23	+0.5
3,214,479	+		Sama_2685	0.23	-0.7
3,214,479	+		Sama_2685	0.23	-1.1
3,214,480	-		Sama_2685	0.23	+0.4
3,214,480	-		Sama_2685	0.23	+1.0
3,214,480	-		Sama_2685	0.23	-0.7
3,214,503	+		Sama_2685	0.26	-0.2
3,214,503	+		Sama_2685	0.26	-0.2
3,214,503	+		Sama_2685	0.26	-0.5
3,214,503	+		Sama_2685	0.26	+1.7
3,214,503	+		Sama_2685	0.26	-1.1
3,214,503	+		Sama_2685	0.26	+0.5
3,214,503	+		Sama_2685	0.26	-1.3
3,214,503	+		Sama_2685	0.26	-0.4
3,214,503	+		Sama_2685	0.26	-1.8
3,214,504	-		Sama_2685	0.26	+1.3
3,214,504	-		Sama_2685	0.26	-0.9
3,214,504	-		Sama_2685	0.26	+0.4
3,214,504	-		Sama_2685	0.26	+0.3
3,214,573	+		Sama_2685	0.35	-0.7
3,214,573	+		Sama_2685	0.35	-0.3
3,214,574	-		Sama_2685	0.35	-0.3
3,214,574	-		Sama_2685	0.35	+1.0
3,214,574	-		Sama_2685	0.35	-0.6
3,214,595	+		Sama_2685	0.37	+1.5
3,214,596	-		Sama_2685	0.38	+1.7
3,214,634	-		Sama_2685	0.42	+0.7
3,214,692	+		Sama_2685	0.49	+1.0
3,214,692	+		Sama_2685	0.49	-1.5
3,214,692	+		Sama_2685	0.49	+1.3
3,214,693	-		Sama_2685	0.49	+0.3
3,214,693	-		Sama_2685	0.49	-0.9
3,214,693	-		Sama_2685	0.49	-1.9
3,214,905	+		Sama_2685	0.75	+0.1
3,214,905	+		Sama_2685	0.75	-0.7
3,214,905	+		Sama_2685	0.75	-0.8
3,214,906	-		Sama_2685	0.75	+1.9
3,214,906	-		Sama_2685	0.75	-0.0
3,214,906	-		Sama_2685	0.75	+0.3
3,214,906	-		Sama_2685	0.75	-0.1
3,214,906	-		Sama_2685	0.75	-1.6
3,214,910	+		Sama_2685	0.76	+0.5
3,214,910	+		Sama_2685	0.76	+0.1
3,214,910	+		Sama_2685	0.76	+0.9
3,214,910	+		Sama_2685	0.76	-1.2
3,214,910	+		Sama_2685	0.76	+0.3
3,214,910	+		Sama_2685	0.76	+0.1
3,214,910	+		Sama_2685	0.76	-0.5
3,214,910	+		Sama_2685	0.76	+3.6
3,214,910	+		Sama_2685	0.76	-0.2
3,214,910	+		Sama_2685	0.76	-1.1
3,214,911	-		Sama_2685	0.76	+1.3
3,214,911	-		Sama_2685	0.76	+0.6
3,214,911	-		Sama_2685	0.76	+1.5
3,214,911	-		Sama_2685	0.76	-0.6
3,214,911	-		Sama_2685	0.76	-0.8
3,214,911	-		Sama_2685	0.76	-1.6
3,214,911	-		Sama_2685	0.76	-0.7
3,214,957	+		Sama_2685	0.82	+1.9
3,214,958	-		Sama_2685	0.82	-0.1
3,214,965	+		Sama_2685	0.83	+1.0
3,214,965	+		Sama_2685	0.83	-1.3
3,215,303	+		Sama_2686	0.29	+1.1
3,215,304	-		Sama_2686	0.29	-0.7
3,215,437	+		Sama_2686	0.54	+1.3
3,215,438	-		Sama_2686	0.54	+0.2
3,215,438	-		Sama_2686	0.54	-0.8
3,215,470	-		Sama_2686	0.60	+2.0
3,215,509	+		Sama_2686	0.68	-0.9
3,215,510	-		Sama_2686	0.68	+1.2
3,215,510	-		Sama_2686	0.68	+0.8
3,215,572	-		Sama_2686	0.80	+5.1
3,215,701	+				-0.5
3,215,701	+				-0.1
3,215,701	+				-1.3
3,215,701	+				-0.5
3,215,702	-				-0.7
3,215,722	+				-0.9
3,215,722	+				-1.4
3,215,723	-				-1.9
3,215,766	-				-0.2
3,215,766	-				-1.4
3,215,796	+				+0.3
3,215,797	-				+0.5
3,215,797	-				-1.8
3,215,797	-				+0.3
3,215,797	-				-2.5
3,215,818	+				-0.5
3,215,818	+				-2.3
3,215,818	+				-2.6
3,215,818	+				-0.7
3,215,819	-				+1.6
3,215,819	-				-2.5
3,215,819	-				+0.4
3,215,819	-				-3.0
3,215,845	+				+1.2
3,215,845	+				-0.1
3,215,845	+				+2.6
3,215,845	+				+0.6
3,215,974	+				+0.6
3,215,974	+				-1.9
3,215,975	-				+0.5
3,215,981	+				+2.3
3,215,981	+				+1.9
3,215,982	-				+0.9
3,215,983	+				-0.7
3,215,983	+				-1.9
3,215,984	-				+0.9
3,215,984	-				+0.3
3,215,984	-				-0.7
3,215,984	-				+0.1
3,215,984	-				-0.7
3,215,984	-				-0.0
3,215,984	-				-0.0
3,216,021	+				-1.6
3,216,022	-				-1.3
3,216,086	-		Sama_2687	0.10	+0.1
3,216,086	-		Sama_2687	0.10	+1.4