Strain Fitness in Shewanella amazonensis SB2B around Sama_2622

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
3,139,380	+		Sama_2621	0.45	+0.1
3,139,392	+		Sama_2621	0.46	-0.1
3,139,529	+		Sama_2621	0.54	-1.6
3,139,640	+		Sama_2621	0.61	-0.7
3,139,689	-		Sama_2621	0.64	-2.1
3,139,756	+		Sama_2621	0.68	-0.5
3,139,756	+		Sama_2621	0.68	-1.9
3,139,757	-		Sama_2621	0.68	-0.1
3,139,890	-		Sama_2621	0.76	+1.1
3,139,891	+		Sama_2621	0.76	-1.5
3,139,891	+		Sama_2621	0.76	-1.9
3,139,891	+		Sama_2621	0.76	-0.1
3,139,995	+		Sama_2621	0.82	-1.5
3,139,996	-		Sama_2621	0.82	-0.7
3,140,155	+				-0.2
3,140,317	-				-0.5
3,140,337	+				+0.2
3,140,337	+				-1.1
3,140,354	-				-0.9
3,140,354	-				+1.4
3,140,354	-				+0.6
3,140,397	+				-1.7
3,140,397	+				-1.5
3,140,397	+				-2.3
3,140,397	+				+1.1
3,140,397	+				-1.1
3,140,398	-				+0.4
3,140,398	-				-0.3
3,140,398	-				-1.1
3,140,398	-				+0.9
3,140,472	+		Sama_2622	0.24	-2.9
3,140,472	+		Sama_2622	0.24	-1.3
3,140,473	-		Sama_2622	0.25	-2.1
3,140,473	-		Sama_2622	0.25	+0.5
3,140,473	-		Sama_2622	0.25	-0.5
3,140,473	-		Sama_2622	0.25	-0.1
3,140,484	+		Sama_2622	0.27	-0.1
3,140,484	+		Sama_2622	0.27	-1.7
3,140,484	+		Sama_2622	0.27	-0.3
3,140,484	+		Sama_2622	0.27	+0.3
3,140,484	+		Sama_2622	0.27	+1.5
3,140,484	+		Sama_2622	0.27	-0.6
3,140,484	+		Sama_2622	0.27	-1.7
3,140,485	-		Sama_2622	0.27	-0.3
3,140,485	-		Sama_2622	0.27	-2.3
3,140,530	+		Sama_2622	0.38	-2.0
3,140,531	-		Sama_2622	0.38	-2.5
3,140,531	-		Sama_2622	0.38	-1.1
3,140,574	+		Sama_2622	0.48	-2.4
3,140,575	-		Sama_2622	0.48	-0.1
3,140,575	-		Sama_2622	0.48	+0.1
3,140,604	-		Sama_2622	0.55	-1.1
3,140,604	-		Sama_2622	0.55	-2.1
3,140,645	-		Sama_2622	0.64	-0.2
3,140,698	+		Sama_2622	0.76	-0.9
3,140,698	+		Sama_2622	0.76	-1.3
3,140,698	+		Sama_2622	0.76	-0.5
3,140,699	-		Sama_2622	0.77	-1.1
3,140,732	-		Sama_2622	0.84	-2.3
3,140,804	-				-1.7
3,140,804	-				+2.3
3,140,831	+				-0.4
3,140,856	+				-0.1
3,140,856	+				-2.0
3,140,856	+				+0.5
3,140,857	-				+1.5
3,140,857	-				+1.4
3,140,857	-				-2.3
3,140,857	-				+0.9
3,140,857	-				+0.4
3,140,857	-				-0.6
3,140,870	+				-1.1
3,140,871	-				-2.0
3,140,886	+				-1.6
3,140,886	+				-2.4
3,140,887	-				+1.5
3,140,887	-				-1.9
3,140,887	-				-2.7
3,140,888	+				-3.0
3,140,889	-				+1.3
3,140,889	-				-1.5
3,140,889	-				+1.3
3,140,889	-				+2.3
3,140,962	-				+0.3
3,140,988	+				+0.3
3,140,988	+				-1.9
3,140,988	+				-0.1
3,140,988	+				-0.5
3,140,989	-				-2.0
3,140,989	-				+1.7
3,140,989	-				+2.6
3,140,989	-				+2.6
3,140,995	-				+0.9
3,141,087	+				+0.1
3,141,087	+				-0.5
3,141,087	+				+0.3
3,141,087	+				+1.2
3,141,087	+				-1.9
3,141,088	-				-0.3
3,141,134	+				-0.2
3,141,135	-				-0.5
3,141,135	-				+0.5
3,141,217	-				+2.5
3,141,232	-		Sama_2623	0.10	+0.3
3,141,232	-		Sama_2623	0.10	+2.2
3,141,316	+		Sama_2623	0.15	+2.4
3,141,316	+		Sama_2623	0.15	+1.0
3,141,316	+		Sama_2623	0.15	+1.9
3,141,317	-		Sama_2623	0.15	-0.3
3,141,317	-		Sama_2623	0.15	-0.5
3,141,399	-		Sama_2623	0.19	+1.5
3,141,399	-		Sama_2623	0.19	+1.9
3,141,399	-		Sama_2623	0.19	+2.3
3,141,401	+		Sama_2623	0.19	+0.3
3,141,401	+		Sama_2623	0.19	+1.7
3,141,402	-		Sama_2623	0.19	+1.0
3,141,417	+		Sama_2623	0.20	+1.9
3,141,439	+		Sama_2623	0.21	+5.0
3,141,439	+		Sama_2623	0.21	+3.7
3,141,440	-		Sama_2623	0.21	-0.1
3,141,440	-		Sama_2623	0.21	+3.1
3,141,463	+		Sama_2623	0.22	+2.7
3,141,463	+		Sama_2623	0.22	+0.6
3,141,464	-		Sama_2623	0.23	+2.1
3,141,464	-		Sama_2623	0.23	+0.6
3,141,464	-		Sama_2623	0.23	+1.2
3,141,564	+		Sama_2623	0.28	-0.1
3,141,564	+		Sama_2623	0.28	+2.2
3,141,564	+		Sama_2623	0.28	-0.5
3,141,564	+		Sama_2623	0.28	+1.4
3,141,564	+		Sama_2623	0.28	-2.5
3,141,565	-		Sama_2623	0.28	+1.2
3,141,580	+		Sama_2623	0.29	+3.3
3,141,580	+		Sama_2623	0.29	-2.0
3,141,581	-		Sama_2623	0.29	+2.2
3,141,581	-		Sama_2623	0.29	-0.7
3,141,581	-		Sama_2623	0.29	+1.6
3,141,596	+		Sama_2623	0.30	+1.2
3,141,597	-		Sama_2623	0.30	-0.5
3,141,602	-		Sama_2623	0.30	+2.0
3,141,613	+		Sama_2623	0.30	+1.9
3,141,613	+		Sama_2623	0.30	+0.4
3,141,613	+		Sama_2623	0.30	+1.9
3,141,613	+		Sama_2623	0.30	-0.0
3,141,614	-		Sama_2623	0.31	-1.1
3,141,641	-		Sama_2623	0.32	-0.1
3,141,679	+		Sama_2623	0.34	+2.0
3,141,679	+		Sama_2623	0.34	-1.3
3,141,680	-		Sama_2623	0.34	+1.3
3,141,680	-		Sama_2623	0.34	+2.4
3,141,701	-		Sama_2623	0.35	+0.1
3,141,731	+		Sama_2623	0.37	-1.1
3,141,760	+		Sama_2623	0.38	-0.1
3,141,799	+		Sama_2623	0.40	+2.6
3,141,800	-		Sama_2623	0.40	+4.6
3,141,800	-		Sama_2623	0.40	+1.0