Strain Fitness in Shewanella amazonensis SB2B around Sama_2615

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
3,129,787	+				-0.9
3,129,802	+				+2.4
3,129,834	+				+0.1
3,129,845	-				-1.0
3,129,924	+		Sama_2614	0.12	-1.3
3,129,925	-		Sama_2614	0.12	+1.9
3,129,991	+		Sama_2614	0.21	+1.3
3,129,991	+		Sama_2614	0.21	+2.6
3,129,991	+		Sama_2614	0.21	+0.5
3,129,992	-		Sama_2614	0.22	-0.1
3,129,992	-		Sama_2614	0.22	-2.6
3,129,992	-		Sama_2614	0.22	-0.7
3,129,992	-		Sama_2614	0.22	-2.0
3,129,992	-		Sama_2614	0.22	+1.0
3,129,992	-		Sama_2614	0.22	+0.9
3,129,992	-		Sama_2614	0.22	-1.6
3,129,992	-		Sama_2614	0.22	-1.6
3,129,995	+		Sama_2614	0.22	-0.9
3,129,996	-		Sama_2614	0.22	+0.6
3,130,078	-		Sama_2614	0.34	+1.2
3,130,205	+		Sama_2614	0.52	+2.4
3,130,223	+		Sama_2614	0.55	-0.8
3,130,223	+		Sama_2614	0.55	+0.4
3,130,224	-		Sama_2614	0.55	+1.6
3,130,224	-		Sama_2614	0.55	-1.8
3,130,224	-		Sama_2614	0.55	+0.4
3,130,224	-		Sama_2614	0.55	+0.7
3,130,224	-		Sama_2614	0.55	-1.3
3,130,226	+		Sama_2614	0.55	-0.9
3,130,226	+		Sama_2614	0.55	+0.3
3,130,226	+		Sama_2614	0.55	+0.2
3,130,227	-		Sama_2614	0.55	+2.6
3,130,227	-		Sama_2614	0.55	-0.6
3,130,254	+		Sama_2614	0.59	+0.5
3,130,254	+		Sama_2614	0.59	+0.3
3,130,254	+		Sama_2614	0.59	-0.7
3,130,300	+		Sama_2614	0.66	+1.0
3,130,303	+		Sama_2614	0.66	-2.4
3,130,303	+		Sama_2614	0.66	+3.3
3,130,303	+		Sama_2614	0.66	+1.6
3,130,303	+		Sama_2614	0.66	-1.2
3,130,304	-		Sama_2614	0.67	+0.1
3,130,304	-		Sama_2614	0.67	+0.2
3,130,304	-		Sama_2614	0.67	+1.3
3,130,325	+		Sama_2614	0.70	+0.9
3,130,326	-		Sama_2614	0.70	-0.5
3,130,326	-		Sama_2614	0.70	-0.5
3,130,326	-		Sama_2614	0.70	+0.5
3,130,326	-		Sama_2614	0.70	-1.8
3,130,326	-		Sama_2614	0.70	-0.7
3,130,329	-		Sama_2614	0.70	-1.4
3,130,355	-		Sama_2614	0.74	-2.4
3,130,436	+		Sama_2614	0.86	-0.1
3,130,466	+				+0.2
3,130,524	-				+1.1
3,130,539	-				-0.6
3,130,571	-				+0.5
3,130,571	-				-0.6
3,130,571	-				-1.3
3,130,584	+				+1.1
3,130,585	-				+2.0
3,130,585	-				+0.6
3,130,612	+				+0.4
3,130,613	-				-0.1
3,130,613	-				-0.8
3,130,613	-				-0.7
3,130,613	-				+2.4
3,130,651	-				+2.1
3,130,670	-				+0.3
3,130,696	+				-0.5
3,130,696	+				+0.9
3,130,731	-				+1.0
3,130,774	+				-1.1
3,130,910	+				-1.1
3,130,911	-				-0.7
3,130,911	-				-0.9
3,130,965	+				+1.3
3,130,965	+				-0.4
3,130,965	+				-0.8
3,130,966	-				+0.2
3,130,966	-				-3.0
3,130,969	+				-1.0
3,130,969	+				+0.3
3,130,969	+				+0.3
3,130,969	+				-3.1
3,130,970	-				-1.6
3,130,970	-				-2.5
3,130,970	-				-0.9
3,131,018	+		Sama_2615	0.12	-0.4
3,131,032	-		Sama_2615	0.13	-0.1
3,131,062	+		Sama_2615	0.14	-1.2
3,131,062	+		Sama_2615	0.14	-2.8
3,131,062	+		Sama_2615	0.14	-2.3
3,131,063	-		Sama_2615	0.14	-1.8
3,131,063	-		Sama_2615	0.14	-2.0
3,131,172	-		Sama_2615	0.20	+1.0
3,131,172	-		Sama_2615	0.20	-2.0
3,131,172	-		Sama_2615	0.20	+0.5
3,131,181	-		Sama_2615	0.20	-1.1
3,131,183	+		Sama_2615	0.20	+0.2
3,131,295	+		Sama_2615	0.25	+0.7
3,131,295	+		Sama_2615	0.25	-0.5
3,131,295	+		Sama_2615	0.25	+1.0
3,131,296	-		Sama_2615	0.25	-0.7
3,131,296	-		Sama_2615	0.25	-0.3
3,131,328	+		Sama_2615	0.27	-0.4
3,131,349	+		Sama_2615	0.28	+0.5
3,131,349	+		Sama_2615	0.28	+1.9
3,131,350	-		Sama_2615	0.28	+0.5
3,131,376	+		Sama_2615	0.29	-3.2
3,131,377	-		Sama_2615	0.29	-1.6
3,131,379	+		Sama_2615	0.29	-1.6
3,131,379	+		Sama_2615	0.29	+0.9
3,131,379	+		Sama_2615	0.29	-1.1
3,131,379	+		Sama_2615	0.29	-0.7
3,131,379	+		Sama_2615	0.29	-1.2
3,131,380	-		Sama_2615	0.30	-0.2
3,131,380	-		Sama_2615	0.30	-0.0
3,131,445	+		Sama_2615	0.33	-0.5
3,131,445	+		Sama_2615	0.33	-0.5
3,131,445	+		Sama_2615	0.33	+1.7
3,131,445	+		Sama_2615	0.33	+0.6
3,131,445	+		Sama_2615	0.33	+0.8
3,131,446	-		Sama_2615	0.33	-1.2
3,131,446	-		Sama_2615	0.33	+1.1
3,131,446	-		Sama_2615	0.33	-1.0
3,131,562	+		Sama_2615	0.38	+2.2
3,131,562	+		Sama_2615	0.38	-0.9
3,131,562	+		Sama_2615	0.38	-0.7
3,131,563	-		Sama_2615	0.38	+0.8
3,131,563	-		Sama_2615	0.38	-1.4
3,131,579	-		Sama_2615	0.39	+0.3
3,131,579	-		Sama_2615	0.39	-1.9
3,131,622	+		Sama_2615	0.41	-1.6
3,131,622	+		Sama_2615	0.41	+2.3
3,131,622	+		Sama_2615	0.41	-1.8
3,131,623	-		Sama_2615	0.41	-0.1
3,131,658	-		Sama_2615	0.43	-2.1
3,131,737	-		Sama_2615	0.47	+0.6
3,131,903	+		Sama_2615	0.55	-1.3
3,131,904	-		Sama_2615	0.55	-0.1
3,131,904	-		Sama_2615	0.55	-2.2
3,131,910	+		Sama_2615	0.55	-0.3
3,131,910	+		Sama_2615	0.55	-1.1
3,131,911	-		Sama_2615	0.55	+0.4
3,131,911	-		Sama_2615	0.55	-2.3
3,131,927	+		Sama_2615	0.56	-0.5
3,131,928	-		Sama_2615	0.56	-1.9
3,131,928	-		Sama_2615	0.56	-0.2
3,131,962	+		Sama_2615	0.57	+1.0
3,131,982	+		Sama_2615	0.58	+1.3
3,131,982	+		Sama_2615	0.58	-1.7
3,131,983	-		Sama_2615	0.58	+0.9
3,131,987	+		Sama_2615	0.59	+0.8
3,131,988	-		Sama_2615	0.59	-2.2
3,131,988	-		Sama_2615	0.59	-0.1
3,131,988	-		Sama_2615	0.59	+0.2
3,131,988	-		Sama_2615	0.59	+0.1
3,131,988	-		Sama_2615	0.59	-0.0
3,132,084	-		Sama_2615	0.63	-0.5
3,132,084	-		Sama_2615	0.63	+0.5
3,132,097	-		Sama_2615	0.64	+2.2
3,132,097	-		Sama_2615	0.64	+0.8
3,132,241	-		Sama_2615	0.71	-1.9
3,132,243	+		Sama_2615	0.71	-1.3
3,132,243	+		Sama_2615	0.71	+0.9
3,132,244	-		Sama_2615	0.71	-0.6
3,132,244	-		Sama_2615	0.71	-1.3
3,132,244	-		Sama_2615	0.71	-0.5
3,132,244	-		Sama_2615	0.71	-0.1
3,132,244	-		Sama_2615	0.71	+1.1
3,132,330	+		Sama_2615	0.75	+0.1
3,132,330	+		Sama_2615	0.75	+1.2
3,132,330	+		Sama_2615	0.75	+1.2
3,132,330	+		Sama_2615	0.75	-0.3
3,132,330	+		Sama_2615	0.75	-0.7
3,132,330	+		Sama_2615	0.75	-0.3
3,132,331	-		Sama_2615	0.75	-0.5
3,132,331	-		Sama_2615	0.75	-1.8
3,132,331	-		Sama_2615	0.75	+0.3
3,132,331	-		Sama_2615	0.75	+2.3
3,132,331	-		Sama_2615	0.75	-1.6
3,132,331	-		Sama_2615	0.75	+0.3
3,132,331	-		Sama_2615	0.75	-0.9
3,132,331	-		Sama_2615	0.75	-0.0
3,132,331	-		Sama_2615	0.75	-1.0
3,132,331	-		Sama_2615	0.75	+0.3
3,132,331	-		Sama_2615	0.75	-0.2
3,132,331	-		Sama_2615	0.75	-1.9
3,132,410	+		Sama_2615	0.79	+0.9
3,132,483	+		Sama_2615	0.82	-0.1
3,132,483	+		Sama_2615	0.82	-0.5
3,132,483	+		Sama_2615	0.82	-1.1
3,132,484	-		Sama_2615	0.82	-0.6
3,132,484	-		Sama_2615	0.82	-0.5
3,132,486	-		Sama_2615	0.82	-0.9
3,132,486	-		Sama_2615	0.82	+0.4
3,132,517	+		Sama_2615	0.84	-1.1
3,132,517	+		Sama_2615	0.84	+0.3
3,132,518	-		Sama_2615	0.84	+0.1
3,132,518	-		Sama_2615	0.84	+0.9
3,132,565	+		Sama_2615	0.86	+1.5
3,132,565	+		Sama_2615	0.86	+0.9
3,132,565	+		Sama_2615	0.86	-0.0
3,132,566	-		Sama_2615	0.86	-2.1
3,132,576	+		Sama_2615	0.87	-0.1
3,132,576	+		Sama_2615	0.87	+1.9
3,132,576	+		Sama_2615	0.87	-0.5
3,132,576	+		Sama_2615	0.87	+1.7
3,132,576	+		Sama_2615	0.87	-0.1
3,132,577	-		Sama_2615	0.87	+1.6
3,132,577	-		Sama_2615	0.87	+1.7
3,132,577	-		Sama_2615	0.87	+1.3
3,132,577	-		Sama_2615	0.87	+1.3
3,132,577	-		Sama_2615	0.87	-0.0
3,132,577	-		Sama_2615	0.87	+0.6
3,132,577	-		Sama_2615	0.87	-1.9
3,132,577	-		Sama_2615	0.87	-1.3
3,132,577	-		Sama_2615	0.87	+0.9
3,132,577	-		Sama_2615	0.87	-1.9
3,132,585	+		Sama_2615	0.87	+1.3
3,132,585	+		Sama_2615	0.87	+0.9
3,132,586	-		Sama_2615	0.87	-0.7
3,132,586	-		Sama_2615	0.87	-1.1
3,132,586	-		Sama_2615	0.87	+1.3
3,132,586	-		Sama_2615	0.87	+1.2
3,132,586	-		Sama_2615	0.87	-2.0
3,132,605	+		Sama_2615	0.88	-2.4
3,132,780	+				+0.3
3,132,780	+				+1.9
3,132,789	+				+2.2
3,132,789	+				+0.3
3,132,789	+				-0.5
3,132,790	-				-0.5
3,132,790	-				+0.1
3,132,790	-				-1.1
3,132,790	-				+1.6
3,132,816	+				-1.3
3,132,816	+				-1.0
3,132,816	+				-0.6
3,132,817	-				-1.1
3,132,817	-				-0.9
3,132,817	-				+1.3
3,132,849	+				+0.2
3,132,850	-				+0.3
3,132,888	-				-0.0
3,132,906	+				-2.0
3,132,907	-				-0.5
3,132,933	+				-0.9
3,132,934	-				-0.4
3,132,944	+				-1.1
3,132,944	+				+0.1
3,132,944	+				-0.3
3,132,944	+				+0.3
3,132,945	-				+0.7
3,132,945	-				-0.1
3,132,946	+				+0.3
3,132,946	+				-0.1
3,132,974	+				-1.1
3,132,974	+				-0.9
3,132,974	+				-0.0
3,132,975	-				+0.3
3,132,975	-				-1.0
3,133,000	+				+0.9
3,133,000	+				+1.7
3,133,000	+				+0.2
3,133,001	-				-0.9
3,133,001	-				+1.0
3,133,119	-		Sama_2616	0.35	+0.9
3,133,176	-		Sama_2616	0.49	+1.9
3,133,176	-		Sama_2616	0.49	-2.0
3,133,176	-		Sama_2616	0.49	-1.9
3,133,181	+		Sama_2616	0.50	-3.0
3,133,181	+		Sama_2616	0.50	-1.5
3,133,181	+		Sama_2616	0.50	+0.2
3,133,181	+		Sama_2616	0.50	-2.2
3,133,181	+		Sama_2616	0.50	-0.4
3,133,181	+		Sama_2616	0.50	-0.9
3,133,181	+		Sama_2616	0.50	-1.3
3,133,181	+		Sama_2616	0.50	+2.9
3,133,181	+		Sama_2616	0.50	-0.5
3,133,181	+		Sama_2616	0.50	+2.3
3,133,181	+		Sama_2616	0.50	+0.6
3,133,181	+		Sama_2616	0.50	+0.4
3,133,181	+		Sama_2616	0.50	+1.3
3,133,181	+		Sama_2616	0.50	+2.8
3,133,181	+		Sama_2616	0.50	-0.5
3,133,181	+		Sama_2616	0.50	-0.3
3,133,181	+		Sama_2616	0.50	+1.6
3,133,181	+		Sama_2616	0.50	+2.2
3,133,181	+		Sama_2616	0.50	+1.1
3,133,181	+		Sama_2616	0.50	+0.3
3,133,181	+		Sama_2616	0.50	+1.6
3,133,181	+		Sama_2616	0.50	+0.3
3,133,181	+		Sama_2616	0.50	-0.7
3,133,181	+		Sama_2616	0.50	-1.5
3,133,182	-		Sama_2616	0.51	+0.1
3,133,182	-		Sama_2616	0.51	+1.1
3,133,182	-		Sama_2616	0.51	-1.5
3,133,182	-		Sama_2616	0.51	+0.4
3,133,182	-		Sama_2616	0.51	+3.2
3,133,182	-		Sama_2616	0.51	-1.0
3,133,182	-		Sama_2616	0.51	-0.1
3,133,182	-		Sama_2616	0.51	-0.5
3,133,182	-		Sama_2616	0.51	+1.0
3,133,182	-		Sama_2616	0.51	+1.5
3,133,185	+		Sama_2616	0.51	+1.1
3,133,185	+		Sama_2616	0.51	-0.7
3,133,185	+		Sama_2616	0.51	-0.1
3,133,185	+		Sama_2616	0.51	+3.2
3,133,185	+		Sama_2616	0.51	+0.5
3,133,185	+		Sama_2616	0.51	+0.5
3,133,185	+		Sama_2616	0.51	+1.7
3,133,185	+		Sama_2616	0.51	-1.1
3,133,185	+		Sama_2616	0.51	+1.0
3,133,185	+		Sama_2616	0.51	-2.5
3,133,186	-		Sama_2616	0.52	+4.2
3,133,186	-		Sama_2616	0.52	-0.5
3,133,186	-		Sama_2616	0.52	+0.4
3,133,186	-		Sama_2616	0.52	+0.9
3,133,186	-		Sama_2616	0.52	+0.0
3,133,186	-		Sama_2616	0.52	-0.7
3,133,186	-		Sama_2616	0.52	+0.3
3,133,186	-		Sama_2616	0.52	+0.9
3,133,186	-		Sama_2616	0.52	+0.6
3,133,207	-		Sama_2616	0.57	-0.7
3,133,207	-		Sama_2616	0.57	-1.6
3,133,207	-		Sama_2616	0.57	-0.6
3,133,207	-		Sama_2616	0.57	-1.8
3,133,207	-		Sama_2616	0.57	+1.4
3,133,270	-		Sama_2616	0.73	-0.3
3,133,294	+		Sama_2616	0.79	+0.6
3,133,294	+		Sama_2616	0.79	-1.1
3,133,295	-		Sama_2616	0.79	-0.7
3,133,299	+		Sama_2616	0.80	-2.4
3,133,299	+		Sama_2616	0.80	+1.3
3,133,377	+				-2.0
3,133,377	+				-0.4
3,133,377	+				-1.7
3,133,378	-				-0.3
3,133,381	+				+0.7
3,133,433	+				-2.1
3,133,434	-				-0.9
3,133,597	+		Sama_2617	0.40	+0.2
3,133,598	-		Sama_2617	0.40	+1.5
3,133,609	+		Sama_2617	0.43	+0.8
3,133,647	+		Sama_2617	0.50	-2.1
3,133,648	-		Sama_2617	0.50	-0.1
3,133,662	-		Sama_2617	0.53	-0.9
3,133,688	+		Sama_2617	0.58	+0.4
3,133,688	+		Sama_2617	0.58	+0.3
3,133,688	+		Sama_2617	0.58	+0.9
3,133,689	-		Sama_2617	0.59	-1.6
3,133,773	+		Sama_2617	0.75	-1.1
3,133,797	+		Sama_2617	0.80	+0.9
3,133,817	+		Sama_2617	0.84	+0.0
3,133,817	+		Sama_2617	0.84	+1.6
3,133,818	-		Sama_2617	0.84	-0.0
3,133,818	-		Sama_2617	0.84	-1.2
3,133,818	-		Sama_2617	0.84	+1.1