Strain Fitness in Shewanella amazonensis SB2B around Sama_2606

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
3,118,429	+				-0.2
3,118,430	-				-0.2
3,118,430	-				-1.0
3,118,430	-				-1.0
3,118,618	-		Sama_2605	0.22	-1.0
3,118,619	+		Sama_2605	0.22	-1.5
3,118,620	-		Sama_2605	0.23	+2.4
3,118,658	-		Sama_2605	0.26	-1.5
3,119,415	-				+2.7
3,119,415	-				+0.4
3,119,415	-				+0.4
3,119,415	-				-0.6
3,119,415	-				+0.0
3,119,465	+				-0.7
3,119,469	+				+0.3
3,119,469	+				-1.9
3,120,259	+				-0.7
3,120,279	+				-0.9
3,120,292	+				+0.7
3,120,292	+				+1.8
3,120,293	-				+4.3
3,120,320	-				+2.7
3,120,358	+				+0.1
3,120,358	+				+1.1
3,120,359	-				+1.4
3,120,359	-				+2.1
3,120,381	-				-0.4
3,120,381	-				+0.3
3,120,381	-				-2.5
3,120,382	+				-0.2
3,120,382	+				+0.3
3,120,383	-				+0.5
3,120,406	+				-1.2
3,120,406	+				-1.9
3,120,407	-				+2.4
3,120,407	-				+0.3
3,120,407	-				-1.0
3,120,427	+				-0.2
3,120,428	-				-1.0
3,120,428	-				-2.6
3,120,790	+				+0.3
3,120,790	+				+2.4
3,120,790	+				-0.9
3,120,790	+				-0.2
3,120,790	+				+0.7
3,120,790	+				-1.9
3,120,790	+				-1.0
3,120,794	+				-1.7
3,120,794	+				-0.2
3,120,794	+				-0.7
3,120,794	+				+0.5
3,120,794	+				-1.1
3,120,794	+				+0.9
3,120,800	+				-0.5
3,120,800	+				+0.8
3,120,905	+				+0.5
3,120,905	+				-1.7
3,120,921	+				-2.5
3,120,927	+				-0.5
3,120,927	+				-0.2
3,120,927	+				+0.1
3,120,983	+		Sama_R0116	0.57	-2.9
3,120,983	+		Sama_R0116	0.57	+0.7
3,121,015	+				-0.7
3,121,026	+				-1.7
3,121,026	+				-1.2
3,121,026	+				-0.2
3,121,059	+				-0.7
3,121,059	+				+2.7
3,121,060	-				+0.7
3,121,060	-				-1.3
3,121,062	+				-0.3
3,121,091	+				-1.0
3,121,091	+				+1.1
3,121,092	-				-3.5
3,121,093	+				-0.6
3,121,093	+				+0.3
3,121,093	+				-0.9
3,121,093	+				-0.5
3,121,094	-				-1.3
3,121,094	-				-2.9
3,121,094	-				+0.2
3,121,097	+				-0.3
3,121,097	+				+2.5
3,121,097	+				-2.0
3,121,097	+				+0.2
3,121,097	+				+0.3
3,121,097	+				+1.6
3,121,097	+				-1.7
3,121,097	+				+1.2
3,121,097	+				+0.0
3,121,097	+				+1.5
3,121,097	+				-0.2
3,121,097	+				+1.7
3,121,097	+				-1.8
3,121,098	-				-1.2
3,121,098	-				-0.4
3,121,098	-				-0.9
3,121,098	-				-1.7
3,121,098	-				+2.2
3,121,098	-				+1.3
3,121,098	-				-0.0
3,121,098	-				+0.1
3,121,099	+				-0.5
3,121,099	+				-1.2
3,121,099	+				-2.2
3,121,099	+				-0.2
3,121,099	+				+2.7
3,121,099	+				+0.5
3,121,100	-				+0.0
3,121,100	-				-0.2
3,121,100	-				+2.6
3,121,100	-				+2.3
3,121,100	-				+1.3
3,121,100	-				-0.3
3,121,103	+				+0.8
3,121,103	+				+0.9
3,121,104	-				-0.2
3,121,104	-				-0.7
3,121,260	+				-1.5
3,121,260	+				-0.3
3,121,260	+				-1.0
3,121,261	-				-1.3
3,121,261	-				+0.3
3,121,261	-				-1.2
3,121,261	-				-0.7