Strain Fitness in Shewanella amazonensis SB2B around Sama_2563

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
3,068,785	+		Sama_2562	0.23	+0.2
3,068,785	+		Sama_2562	0.23	-1.3
3,068,785	+		Sama_2562	0.23	-0.8
3,068,786	-		Sama_2562	0.23	+2.8
3,068,786	-		Sama_2562	0.23	-1.9
3,068,814	+		Sama_2562	0.26	-0.6
3,068,814	+		Sama_2562	0.26	-2.3
3,068,814	+		Sama_2562	0.26	+2.4
3,068,814	+		Sama_2562	0.26	-1.8
3,068,815	-		Sama_2562	0.26	-0.5
3,068,815	-		Sama_2562	0.26	-0.3
3,068,815	-		Sama_2562	0.26	+2.1
3,068,940	+		Sama_2562	0.36	-1.6
3,068,940	+		Sama_2562	0.36	-0.5
3,068,941	-		Sama_2562	0.36	+2.6
3,068,941	-		Sama_2562	0.36	-0.3
3,068,941	-		Sama_2562	0.36	+1.8
3,068,941	-		Sama_2562	0.36	-0.0
3,068,941	-		Sama_2562	0.36	+0.9
3,068,999	-		Sama_2562	0.41	-0.1
3,069,037	+		Sama_2562	0.44	-3.2
3,069,045	-		Sama_2562	0.44	-0.0
3,069,084	+		Sama_2562	0.48	-1.8
3,069,084	+		Sama_2562	0.48	-2.4
3,069,085	-		Sama_2562	0.48	-0.5
3,069,252	+		Sama_2562	0.61	-0.8
3,069,253	-		Sama_2562	0.61	-1.9
3,069,317	-		Sama_2562	0.66	-1.6
3,069,517	-		Sama_2562	0.82	+0.2
3,069,517	-		Sama_2562	0.82	-0.6
3,069,534	+		Sama_2562	0.84	-0.5
3,069,534	+		Sama_2562	0.84	-0.5
3,069,534	+		Sama_2562	0.84	-2.3
3,069,535	-		Sama_2562	0.84	-0.0
3,069,535	-		Sama_2562	0.84	+1.5
3,069,535	-		Sama_2562	0.84	-1.8
3,069,535	-		Sama_2562	0.84	+1.0
3,069,561	-		Sama_2562	0.86	+0.3
3,069,572	-		Sama_2562	0.87	-0.6
3,069,572	-		Sama_2562	0.87	-0.7
3,069,595	-		Sama_2562	0.89	+0.8
3,069,595	-		Sama_2562	0.89	-0.2
3,069,658	-				-1.0
3,069,676	+				-1.5
3,069,677	-				-3.2
3,069,696	-				-1.6
3,069,757	-				-0.8
3,069,768	-				-2.4
3,069,774	+				-2.7
3,069,775	-				-1.0
3,069,976	+		Sama_2563	0.25	-2.4
3,069,976	+		Sama_2563	0.25	-1.3
3,069,976	+		Sama_2563	0.25	-2.1
3,069,976	+		Sama_2563	0.25	-2.1
3,069,977	-		Sama_2563	0.25	-0.8
3,069,977	-		Sama_2563	0.25	-0.3
3,070,013	+		Sama_2563	0.29	-1.3
3,070,014	-		Sama_2563	0.29	-0.5
3,070,014	-		Sama_2563	0.29	-2.6
3,070,014	-		Sama_2563	0.29	-0.5
3,070,017	-		Sama_2563	0.30	-0.6
3,070,017	-		Sama_2563	0.30	-1.3
3,070,083	+		Sama_2563	0.38	-2.2
3,070,083	+		Sama_2563	0.38	-0.8
3,070,084	-		Sama_2563	0.38	-0.5
3,070,217	-		Sama_2563	0.55	+0.4
3,070,217	-		Sama_2563	0.55	+0.1
3,070,277	+		Sama_2563	0.63	-3.0
3,070,353	+		Sama_2563	0.72	+0.1
3,070,354	-		Sama_2563	0.72	-0.3
3,070,354	-		Sama_2563	0.72	-2.5
3,070,514	+				-3.2
3,070,514	+				-1.5
3,070,514	+				-2.0
3,070,515	-				-1.9
3,070,515	-				-1.0
3,070,515	-				-0.5
3,070,515	-				+2.0
3,070,515	-				+0.4
3,070,515	-				+1.3
3,070,515	-				-0.2
3,070,515	-				-0.8
3,070,515	-				-1.0
3,070,515	-				-1.2
3,070,516	+				-0.2
3,070,517	-				-0.9
3,070,551	-				-1.3
3,070,551	-				-1.3
3,070,551	-				-2.1
3,070,551	-				+0.7
3,070,582	+				-2.3
3,070,583	-				+1.2
3,070,616	+		Sama_2564	0.12	-1.8
3,070,617	-		Sama_2564	0.13	+1.5
3,070,706	+		Sama_2564	0.35	-1.0
3,070,706	+		Sama_2564	0.35	-3.1
3,070,758	-		Sama_2564	0.48	+0.8
3,070,806	+		Sama_2564	0.60	-2.1
3,070,806	+		Sama_2564	0.60	-2.3
3,070,806	+		Sama_2564	0.60	-0.2
3,070,807	-		Sama_2564	0.60	-2.8
3,070,807	-		Sama_2564	0.60	+0.4
3,070,807	-		Sama_2564	0.60	-0.5
3,070,807	-		Sama_2564	0.60	-1.0
3,070,807	-		Sama_2564	0.60	-2.4
3,070,807	-		Sama_2564	0.60	-1.3
3,070,807	-		Sama_2564	0.60	-1.8
3,070,807	-		Sama_2564	0.60	-1.0
3,070,810	+		Sama_2564	0.61	-1.2
3,070,810	+		Sama_2564	0.61	-2.6
3,070,810	+		Sama_2564	0.61	-2.4
3,070,810	+		Sama_2564	0.61	-1.0
3,070,810	+		Sama_2564	0.61	-2.4
3,070,810	+		Sama_2564	0.61	-1.5
3,070,811	-		Sama_2564	0.61	-2.1
3,070,811	-		Sama_2564	0.61	+1.3
3,070,811	-		Sama_2564	0.61	-0.3
3,070,811	-		Sama_2564	0.61	+0.9
3,070,933	-				-1.6
3,070,983	+				+1.8
3,071,000	+				-1.6
3,071,000	+				-1.3
3,071,152	+				+0.9
3,071,152	+				+1.6
3,071,522	-		Sama_2565	0.51	-1.0