Strain Fitness in Shewanella amazonensis SB2B around Sama_2545

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
3,054,065	+		Sama_2543	0.78	-1.4
3,054,122	+		Sama_2543	0.82	-0.7
3,054,122	+		Sama_2543	0.82	-0.4
3,054,122	+		Sama_2543	0.82	-0.8
3,054,123	-		Sama_2543	0.82	-0.5
3,054,123	-		Sama_2543	0.82	-2.4
3,054,164	-		Sama_2543	0.85	-0.7
3,054,164	-		Sama_2543	0.85	-1.0
3,054,411	-				+0.4
3,054,411	-				-1.8
3,054,434	-		Sama_2544	0.13	+0.8
3,054,443	-		Sama_2544	0.14	-0.5
3,054,476	+		Sama_2544	0.21	-1.2
3,054,477	-		Sama_2544	0.21	+0.7
3,054,539	+		Sama_2544	0.33	+0.9
3,054,551	+		Sama_2544	0.36	+2.4
3,054,552	-		Sama_2544	0.36	-0.7
3,054,560	-		Sama_2544	0.37	+1.3
3,054,560	-		Sama_2544	0.37	-0.9
3,054,560	-		Sama_2544	0.37	-1.4
3,054,560	-		Sama_2544	0.37	+0.7
3,054,607	+		Sama_2544	0.47	-0.8
3,054,608	-		Sama_2544	0.47	-0.4
3,054,641	+		Sama_2544	0.53	-1.2
3,054,699	+		Sama_2544	0.65	-2.3
3,054,699	+		Sama_2544	0.65	-0.4
3,054,765	-		Sama_2544	0.78	-1.1
3,054,776	-		Sama_2544	0.80	-0.3
3,054,810	+		Sama_2544	0.87	-0.3
3,054,810	+		Sama_2544	0.87	-1.2
3,054,844	+				-0.6
3,054,877	-				-1.2
3,054,880	+				-2.0
3,054,880	+				+0.4
3,054,880	+				+1.7
3,054,880	+				+1.0
3,054,881	-				-2.1
3,054,881	-				+0.3
3,054,881	-				-0.8
3,054,881	-				+1.0
3,054,881	-				-1.8
3,054,887	+				+2.5
3,054,887	+				-0.8
3,054,888	-				+2.5
3,054,888	-				-2.6
3,054,888	-				-2.3
3,054,891	+				-0.4
3,054,892	-				+1.6
3,054,899	+				-0.6
3,055,006	+				+2.4
3,055,006	+				+1.1
3,055,006	+				+2.8
3,055,006	+				-1.4
3,055,006	+				+0.5
3,055,007	-				-1.6
3,055,007	-				-0.1
3,055,007	-				-0.8
3,055,023	+				+1.2
3,055,023	+				+2.1
3,055,023	+				+0.5
3,055,023	+				+0.2
3,055,065	+		Sama_2545	0.13	-0.8
3,055,087	-		Sama_2545	0.20	-2.4
3,055,087	-		Sama_2545	0.20	+1.8
3,055,087	-		Sama_2545	0.20	-0.4
3,055,088	+		Sama_2545	0.20	-0.5
3,055,088	+		Sama_2545	0.20	+0.1
3,055,089	-		Sama_2545	0.21	-2.3
3,055,089	-		Sama_2545	0.21	-0.2
3,055,089	-		Sama_2545	0.21	-1.0
3,055,089	-		Sama_2545	0.21	+0.0
3,055,092	+		Sama_2545	0.22	+1.2
3,055,092	+		Sama_2545	0.22	+1.4
3,055,092	+		Sama_2545	0.22	-0.2
3,055,092	+		Sama_2545	0.22	-1.9
3,055,093	-		Sama_2545	0.22	-1.2
3,055,247	+		Sama_2545	0.73	-0.0
3,055,247	+		Sama_2545	0.73	+1.6
3,055,247	+		Sama_2545	0.73	+1.2
3,055,247	+		Sama_2545	0.73	+0.8
3,055,247	+		Sama_2545	0.73	-0.2
3,055,248	-		Sama_2545	0.74	-0.4
3,055,248	-		Sama_2545	0.74	-0.4
3,055,248	-		Sama_2545	0.74	-0.7
3,055,248	-		Sama_2545	0.74	+0.2
3,055,248	-		Sama_2545	0.74	-0.5
3,055,308	+				-0.1
3,055,308	+				+1.2
3,055,312	-				+0.8
3,055,326	+				-0.7
3,055,326	+				+0.6
3,055,326	+				+1.4
3,055,326	+				-0.9
3,055,326	+				-1.2
3,055,326	+				-1.0
3,055,327	-				+0.6
3,055,327	-				+0.4
3,055,327	-				-1.4
3,055,327	-				-1.6
3,055,327	-				-0.8
3,055,327	-				+0.0
3,055,327	-				+0.2
3,055,472	-		Sama_2546	0.17	+0.9
3,055,499	+		Sama_2546	0.22	+2.4
3,055,499	+		Sama_2546	0.22	-0.1
3,055,499	+		Sama_2546	0.22	-0.3
3,055,499	+		Sama_2546	0.22	+0.9
3,055,500	-		Sama_2546	0.22	+0.6
3,055,500	-		Sama_2546	0.22	+0.4
3,055,500	-		Sama_2546	0.22	-0.0
3,055,500	-		Sama_2546	0.22	-0.2
3,055,500	-		Sama_2546	0.22	+2.4
3,055,594	+		Sama_2546	0.40	+1.4
3,055,595	-		Sama_2546	0.40	-0.5
3,055,646	+		Sama_2546	0.50	-1.0
3,055,646	+		Sama_2546	0.50	-1.4
3,055,647	-		Sama_2546	0.50	+0.6
3,055,647	-		Sama_2546	0.50	+0.2
3,055,647	-		Sama_2546	0.50	+0.6
3,055,647	-		Sama_2546	0.50	-1.1
3,055,686	+		Sama_2546	0.58	+0.8
3,055,687	-		Sama_2546	0.58	+0.6
3,055,687	-		Sama_2546	0.58	-0.2
3,055,687	-		Sama_2546	0.58	+3.1
3,055,687	-		Sama_2546	0.58	-1.5
3,055,687	-		Sama_2546	0.58	-0.2
3,055,804	+		Sama_2546	0.80	+0.0
3,055,805	-		Sama_2546	0.80	+1.2
3,055,924	-				-1.9
3,055,950	+				-0.8
3,055,950	+				+1.2
3,055,951	-				-0.7
3,055,979	+				+1.6
3,055,979	+				+1.7
3,055,980	-				-1.2
3,055,980	-				+3.3
3,056,049	-				-0.9
3,056,106	-		Sama_2547	0.15	-0.3
3,056,106	-		Sama_2547	0.15	-2.2
3,056,149	-		Sama_2547	0.22	+0.9
3,056,279	+		Sama_2547	0.43	+0.1
3,056,279	+		Sama_2547	0.43	+0.2
3,056,279	+		Sama_2547	0.43	+0.3
3,056,280	-		Sama_2547	0.43	-0.7
3,056,280	-		Sama_2547	0.43	+0.2
3,056,280	-		Sama_2547	0.43	-0.2
3,056,280	-		Sama_2547	0.43	-1.2
3,056,303	+		Sama_2547	0.47	-0.9
3,056,304	-		Sama_2547	0.47	-2.0
3,056,319	-		Sama_2547	0.50	-1.0
3,056,319	-		Sama_2547	0.50	+2.1