Strain Fitness in Shewanella amazonensis SB2B around Sama_2496

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
2,995,904	-		Sama_2494	0.51	+1.6
2,995,904	-		Sama_2494	0.51	+0.3
2,995,907	-		Sama_2494	0.52	+0.8
2,995,915	+		Sama_2494	0.53	+1.0
2,995,941	+		Sama_2494	0.57	+0.4
2,995,983	+		Sama_2494	0.64	-1.7
2,995,989	-		Sama_2494	0.64	-3.2
2,996,049	+		Sama_2494	0.74	+1.3
2,996,065	-		Sama_2494	0.76	+0.8
2,996,086	+		Sama_2494	0.80	+1.7
2,996,102	+		Sama_2494	0.82	+0.5
2,996,103	-		Sama_2494	0.82	+2.7
2,996,103	-		Sama_2494	0.82	+0.8
2,996,103	-		Sama_2494	0.82	-0.5
2,996,103	-		Sama_2494	0.82	+0.7
2,996,138	+		Sama_2494	0.88	-2.5
2,996,138	+		Sama_2494	0.88	-2.9
2,996,139	-		Sama_2494	0.88	+0.2
2,996,139	-		Sama_2494	0.88	-0.5
2,996,202	-				+0.8
2,996,202	-				-1.0
2,996,203	+				+1.2
2,996,203	+				-0.7
2,996,203	+				-0.7
2,996,203	+				-1.8
2,996,203	+				-0.5
2,996,204	-				+0.9
2,996,204	-				+0.3
2,996,204	-				-0.0
2,996,204	-				-0.7
2,996,204	-				+1.3
2,996,204	-				-1.2
2,996,204	-				-1.0
2,996,253	+				-3.5
2,996,259	+				-0.2
2,996,259	+				-1.9
2,996,259	+				-1.7
2,996,259	+				+0.3
2,996,259	+				-1.7
2,996,260	-				+0.5
2,996,260	-				-0.3
2,996,260	-				-0.5
2,996,262	+				+3.4
2,996,263	-				-0.2
2,996,316	+				+2.6
2,996,317	-				+1.1
2,996,317	-				-2.3
2,996,317	-				-2.8
2,996,317	-				-0.8
2,996,323	+				-0.8
2,996,323	+				+0.6
2,996,323	+				-1.5
2,996,323	+				+0.1
2,996,324	-				-0.2
2,996,324	-				+1.3
2,996,378	+				-0.8
2,996,378	+				-1.9
2,996,378	+				-0.9
2,996,379	-				+1.8
2,996,379	-				+2.1
2,996,379	-				-2.1
2,996,379	-				+1.2
2,996,381	+				-0.2
2,996,382	-				+0.8
2,996,382	-				-2.2
2,996,382	-				-0.5
2,996,387	-				-0.1
2,996,398	+				-1.2
2,996,399	-				-1.5
2,996,399	-				-1.1
2,996,409	-				+1.6
2,996,426	+		Sama_2495	0.13	+0.5
2,996,430	+		Sama_2495	0.13	-0.8
2,996,430	+		Sama_2495	0.13	-2.5
2,996,430	+		Sama_2495	0.13	+0.7
2,996,430	+		Sama_2495	0.13	-1.2
2,996,430	+		Sama_2495	0.13	+0.4
2,996,430	+		Sama_2495	0.13	-1.8
2,996,430	+		Sama_2495	0.13	-0.2
2,996,430	+		Sama_2495	0.13	+0.1
2,996,431	-		Sama_2495	0.14	-1.8
2,996,431	-		Sama_2495	0.14	+1.4
2,996,431	-		Sama_2495	0.14	-0.1
2,996,431	-		Sama_2495	0.14	-2.1
2,996,431	-		Sama_2495	0.14	+0.4
2,996,431	-		Sama_2495	0.14	-0.2
2,996,431	-		Sama_2495	0.14	+0.4
2,996,431	-		Sama_2495	0.14	-2.0
2,996,432	+		Sama_2495	0.14	+0.2
2,996,488	+		Sama_2495	0.25	-1.5
2,996,488	+		Sama_2495	0.25	-2.0
2,996,509	+		Sama_2495	0.29	-0.9
2,996,510	-		Sama_2495	0.30	-0.5
2,996,510	-		Sama_2495	0.30	-1.3
2,996,529	+		Sama_2495	0.34	-0.2
2,996,529	+		Sama_2495	0.34	-1.0
2,996,529	+		Sama_2495	0.34	-2.3
2,996,529	+		Sama_2495	0.34	-1.4
2,996,530	-		Sama_2495	0.34	+1.0
2,996,530	-		Sama_2495	0.34	-3.5
2,996,530	-		Sama_2495	0.34	-1.2
2,996,530	-		Sama_2495	0.34	+1.0
2,996,551	+		Sama_2495	0.38	-1.5
2,996,552	-		Sama_2495	0.38	-0.5
2,996,552	-		Sama_2495	0.38	-0.8
2,996,552	-		Sama_2495	0.38	+0.2
2,996,572	+		Sama_2495	0.42	+1.8
2,996,792	+		Sama_2495	0.87	-2.5
2,996,912	+				-1.3
2,996,913	-				-0.5
2,996,913	-				+0.2
2,996,913	-				-0.2
2,996,971	+				+1.8
2,996,971	+				+3.0
2,996,971	+				+2.0
2,996,971	+				+1.2
2,996,975	-		Sama_2496	0.10	+1.5
2,996,982	-		Sama_2496	0.11	+0.4
2,997,006	-		Sama_2496	0.14	-0.9
2,997,050	+		Sama_2496	0.21	-0.6
2,997,065	-		Sama_2496	0.23	+1.9
2,997,134	-		Sama_2496	0.32	-0.4
2,997,142	+		Sama_2496	0.33	+2.1
2,997,142	+		Sama_2496	0.33	-0.7
2,997,144	-		Sama_2496	0.34	+0.4
2,997,168	+		Sama_2496	0.37	+0.5
2,997,175	-		Sama_2496	0.38	-0.0
2,997,175	-		Sama_2496	0.38	+1.7
2,997,203	-		Sama_2496	0.42	+2.1
2,997,310	+		Sama_2496	0.57	-0.0
2,997,310	+		Sama_2496	0.57	-0.8
2,997,310	+		Sama_2496	0.57	+2.9
2,997,310	+		Sama_2496	0.57	+1.0
2,997,310	+		Sama_2496	0.57	-0.8
2,997,311	-		Sama_2496	0.57	-0.5
2,997,311	-		Sama_2496	0.57	-2.5
2,997,395	-		Sama_2496	0.69	+0.8
2,997,395	-		Sama_2496	0.69	+0.4
2,997,397	+		Sama_2496	0.69	-0.4
2,997,397	+		Sama_2496	0.69	-2.7
2,997,398	-		Sama_2496	0.69	-0.8
2,997,398	-		Sama_2496	0.69	+1.0
2,997,398	-		Sama_2496	0.69	-0.3
2,997,398	-		Sama_2496	0.69	+0.7
2,997,475	+		Sama_2496	0.80	-1.0
2,997,475	+		Sama_2496	0.80	+0.5
2,997,476	-		Sama_2496	0.80	-0.8
2,997,476	-		Sama_2496	0.80	+1.5
2,997,509	-		Sama_2496	0.85	+0.6
2,997,509	-		Sama_2496	0.85	+0.8
2,997,512	-		Sama_2496	0.85	-0.5
2,997,642	+				-1.2
2,997,642	+				-2.0
2,997,642	+				+2.1
2,997,642	+				-2.7
2,997,642	+				-1.5
2,997,642	+				+0.6
2,997,642	+				-1.6
2,997,642	+				+0.2
2,997,643	-				-0.2
2,997,643	-				-1.6
2,997,643	-				-1.9
2,997,643	-				+1.0
2,997,643	-				+1.8
2,997,643	-				-1.6
2,997,643	-				+0.5
2,997,643	-				+0.5
2,997,644	+				-2.5
2,997,644	+				-0.8
2,997,644	+				-0.8
2,997,644	+				-1.5
2,997,644	+				+0.2
2,997,644	+				+1.2
2,997,645	-				+0.3
2,997,645	-				-0.3
2,997,645	-				+0.5
2,997,757	+				-0.8
2,997,758	-				+0.5
2,997,758	-				-1.0
2,997,759	+				-0.1
2,997,770	+				-0.0
2,997,771	-				-1.8
2,997,780	+				-2.0
2,997,839	+		Sama_2497	0.13	-1.0
2,997,840	-		Sama_2497	0.13	-1.0
2,997,840	-		Sama_2497	0.13	-0.7
2,997,840	-		Sama_2497	0.13	-2.1
2,997,840	-		Sama_2497	0.13	-0.9
2,997,858	+		Sama_2497	0.14	-1.5
2,997,858	+		Sama_2497	0.14	+1.1
2,997,859	-		Sama_2497	0.14	+0.5
2,997,860	+		Sama_2497	0.14	-0.5
2,997,860	+		Sama_2497	0.14	-2.6
2,997,861	-		Sama_2497	0.14	-0.3
2,997,861	-		Sama_2497	0.14	-0.5
2,997,861	-		Sama_2497	0.14	-0.5
2,997,861	-		Sama_2497	0.14	+1.2
2,997,861	-		Sama_2497	0.14	+0.8
2,997,861	-		Sama_2497	0.14	+1.8
2,997,879	-		Sama_2497	0.15	-0.7
2,997,955	-		Sama_2497	0.20	-0.9
2,997,965	+		Sama_2497	0.20	+0.5
2,997,965	+		Sama_2497	0.20	+1.8
2,997,965	+		Sama_2497	0.20	-2.2
2,997,965	+		Sama_2497	0.20	-2.1
2,997,965	+		Sama_2497	0.20	+0.2
2,997,966	-		Sama_2497	0.20	+0.1
2,997,966	-		Sama_2497	0.20	+0.2
2,997,966	-		Sama_2497	0.20	-1.0
2,997,966	-		Sama_2497	0.20	-0.5
2,997,966	-		Sama_2497	0.20	+1.7
2,997,974	-		Sama_2497	0.21	+0.9
2,997,977	+		Sama_2497	0.21	+0.5
2,997,977	+		Sama_2497	0.21	+0.8
2,997,988	+		Sama_2497	0.22	-1.8
2,997,989	-		Sama_2497	0.22	-0.5
2,997,989	-		Sama_2497	0.22	-0.5
2,998,039	-		Sama_2497	0.25	+1.7
2,998,175	+		Sama_2497	0.33	-2.3
2,998,176	-		Sama_2497	0.33	-1.1
2,998,176	-		Sama_2497	0.33	-0.2
2,998,186	-		Sama_2497	0.33	+1.6
2,998,186	-		Sama_2497	0.33	-0.0
2,998,211	+		Sama_2497	0.35	-0.8
2,998,212	-		Sama_2497	0.35	-1.9
2,998,212	-		Sama_2497	0.35	-2.2
2,998,301	+		Sama_2497	0.40	-1.0
2,998,301	+		Sama_2497	0.40	-1.5
2,998,301	+		Sama_2497	0.40	+3.4
2,998,302	-		Sama_2497	0.40	-0.1
2,998,322	-		Sama_2497	0.41	+3.4
2,998,322	-		Sama_2497	0.41	+0.8
2,998,379	+		Sama_2497	0.44	-1.2
2,998,379	+		Sama_2497	0.44	-0.8
2,998,379	+		Sama_2497	0.44	-0.0
2,998,381	+		Sama_2497	0.45	-1.2
2,998,381	+		Sama_2497	0.45	-2.7
2,998,381	+		Sama_2497	0.45	-0.2
2,998,381	+		Sama_2497	0.45	-1.8
2,998,382	-		Sama_2497	0.45	+1.0
2,998,382	-		Sama_2497	0.45	+1.6
2,998,382	-		Sama_2497	0.45	+1.7
2,998,549	-		Sama_2497	0.54	+0.8
2,998,549	-		Sama_2497	0.54	-2.1
2,998,574	+		Sama_2497	0.56	-3.5
2,998,575	-		Sama_2497	0.56	+0.3