Strain Fitness in Shewanella amazonensis SB2B around Sama_2492

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
2,993,064	+		Sama_2490	0.68	+1.5
2,993,065	-		Sama_2490	0.68	-0.5
2,993,065	-		Sama_2490	0.68	+1.3
2,993,065	-		Sama_2490	0.68	+0.1
2,993,162	+		Sama_2490	0.77	+0.2
2,993,162	+		Sama_2490	0.77	-0.8
2,993,162	+		Sama_2490	0.77	-0.9
2,993,162	+		Sama_2490	0.77	-0.5
2,993,162	+		Sama_2490	0.77	-2.1
2,993,163	-		Sama_2490	0.77	-2.0
2,993,163	-		Sama_2490	0.77	-0.3
2,993,163	-		Sama_2490	0.77	+2.7
2,993,163	-		Sama_2490	0.77	-2.4
2,993,274	+		Sama_2490	0.87	-0.5
2,993,275	-		Sama_2490	0.87	-1.7
2,993,287	-		Sama_2490	0.88	-2.1
2,993,287	-		Sama_2490	0.88	-2.0
2,993,287	-		Sama_2490	0.88	+1.8
2,993,302	+		Sama_2490	0.89	-1.5
2,993,302	+		Sama_2490	0.89	-0.5
2,993,302	+		Sama_2490	0.89	-2.1
2,993,302	+		Sama_2490	0.89	+0.8
2,993,302	+		Sama_2490	0.89	-2.1
2,993,302	+		Sama_2490	0.89	-1.4
2,993,303	-		Sama_2490	0.89	+0.5
2,993,303	-		Sama_2490	0.89	-1.1
2,993,303	-		Sama_2490	0.89	-1.0
2,993,303	-		Sama_2490	0.89	-0.5
2,993,304	+		Sama_2490	0.89	+1.3
2,993,304	+		Sama_2490	0.89	+2.2
2,993,305	-		Sama_2490	0.89	-0.8
2,993,305	-		Sama_2490	0.89	-1.1
2,993,369	+				-1.8
2,993,369	+				+3.0
2,993,379	+				-0.6
2,993,379	+				-1.2
2,993,379	+				+0.5
2,993,380	-				+0.8
2,993,419	+				-1.2
2,993,420	-				-2.1
2,993,420	-				+0.4
2,993,450	-				-1.2
2,993,450	-				+0.1
2,993,450	-				-0.5
2,993,450	-				-0.0
2,993,450	-				-1.4
2,993,489	-		Sama_2491	0.23	-2.2
2,993,489	-		Sama_2491	0.23	-1.5
2,993,571	+		Sama_2491	0.53	+1.5
2,993,572	-		Sama_2491	0.53	+0.8
2,993,639	+		Sama_2491	0.78	+0.8
2,993,639	+		Sama_2491	0.78	-0.8
2,993,639	+		Sama_2491	0.78	-0.1
2,993,639	+		Sama_2491	0.78	-0.5
2,993,639	+		Sama_2491	0.78	+0.1
2,993,639	+		Sama_2491	0.78	+1.2
2,993,640	-		Sama_2491	0.78	-1.5
2,993,677	+				+1.3
2,993,677	+				+0.8
2,993,678	-				-0.7
2,993,709	+				-0.2
2,993,710	-				+1.8
2,993,744	+				+1.1
2,993,760	+				-2.0
2,993,761	-				-0.2
2,993,781	+				+1.4
2,993,781	+				-1.0
2,993,781	+				+0.1
2,993,782	-				+1.3
2,993,782	-				-2.7
2,993,782	-				+1.0
2,993,782	-				-0.9
2,993,861	+				-1.2
2,993,861	+				-2.5
2,993,861	+				-2.5
2,993,861	+				-0.9
2,993,866	+				+1.7
2,993,866	+				-0.2
2,993,866	+				-0.2
2,993,866	+				-0.5
2,993,867	-				-0.3
2,993,880	+				+0.7
2,993,888	+				-0.9
2,993,888	+				-0.4
2,993,888	+				+0.8
2,993,888	+				+1.8
2,993,889	-				-1.9
2,993,889	-				+1.4
2,993,889	-				+1.8
2,993,889	-				-1.0
2,993,889	-				-0.1
2,993,891	+				+1.5
2,993,927	+				-2.4
2,993,965	+				-0.7
2,993,976	+				-0.8
2,993,976	+				-0.2
2,993,976	+				+0.6
2,994,011	-				+0.5
2,994,011	-				-1.9
2,994,012	+				+0.6
2,994,013	-				-0.4
2,994,020	-				-1.2
2,994,052	+		Sama_2492	0.13	-0.1
2,994,052	+		Sama_2492	0.13	-0.7
2,994,180	+		Sama_2492	0.47	+0.2
2,994,180	+		Sama_2492	0.47	+1.2
2,994,181	-		Sama_2492	0.48	-0.4
2,994,181	-		Sama_2492	0.48	-1.3
2,994,190	-		Sama_2492	0.50	+0.2
2,994,190	-		Sama_2492	0.50	-0.9
2,994,203	+		Sama_2492	0.54	-2.0
2,994,228	+		Sama_2492	0.60	+0.7
2,994,229	-		Sama_2492	0.61	+0.8
2,994,237	+		Sama_2492	0.63	+0.4
2,994,237	+		Sama_2492	0.63	+0.2
2,994,237	+		Sama_2492	0.63	-0.5
2,994,238	-		Sama_2492	0.63	-0.1
2,994,238	-		Sama_2492	0.63	-0.2
2,994,238	-		Sama_2492	0.63	+2.6
2,994,238	-		Sama_2492	0.63	+0.1
2,994,238	-		Sama_2492	0.63	-2.6
2,994,241	+		Sama_2492	0.64	-1.0
2,994,241	+		Sama_2492	0.64	+0.7
2,994,260	+		Sama_2492	0.69	-0.8
2,994,260	+		Sama_2492	0.69	+0.4
2,994,261	-		Sama_2492	0.69	-0.5
2,994,360	-				+0.4
2,994,390	+				-0.5
2,994,390	+				+1.3
2,994,390	+				-1.5
2,994,391	-				+1.0
2,994,391	-				+0.8
2,994,391	-				+1.5
2,994,391	-				-2.8
2,994,391	-				+1.7
2,994,391	-				+1.5
2,994,391	-				-0.1
2,994,392	+				+2.1
2,994,393	-				-1.1
2,994,393	-				+0.5
2,994,406	-				+0.5
2,994,406	-				-0.6
2,994,416	-				-1.5
2,994,421	+				-3.6
2,994,422	-				+1.4
2,994,435	+				-2.6
2,994,575	+				-0.8
2,994,576	-				-0.9
2,994,576	-				+0.1
2,994,577	+				+0.9
2,994,577	+				-0.5
2,994,578	-				+2.3
2,994,578	-				+1.6
2,994,578	-				+0.7
2,994,631	-				-0.8
2,994,643	+				+2.8
2,994,643	+				+1.1
2,994,725	+		Sama_2493	0.12	+1.6
2,994,725	+		Sama_2493	0.12	-0.5
2,994,725	+		Sama_2493	0.12	+0.2
2,994,792	-		Sama_2493	0.20	-1.7
2,994,817	-		Sama_2493	0.23	+0.5
2,994,859	+		Sama_2493	0.29	-2.5
2,994,900	+		Sama_2493	0.34	-1.5
2,994,900	+		Sama_2493	0.34	-0.6
2,994,900	+		Sama_2493	0.34	-1.5
2,994,936	+		Sama_2493	0.38	-1.4
2,994,936	+		Sama_2493	0.38	-0.0
2,994,937	-		Sama_2493	0.38	+1.7
2,994,937	-		Sama_2493	0.38	-0.6
2,994,937	-		Sama_2493	0.38	+1.0
2,994,942	-		Sama_2493	0.39	-0.2
2,994,983	-		Sama_2493	0.44	+1.1
2,995,014	-		Sama_2493	0.48	-2.3
2,995,033	-		Sama_2493	0.50	+0.8
2,995,033	-		Sama_2493	0.50	-2.5
2,995,074	-		Sama_2493	0.55	+0.4
2,995,098	+		Sama_2493	0.58	-0.8
2,995,153	-		Sama_2493	0.65	+0.1
2,995,153	-		Sama_2493	0.65	-1.8
2,995,258	+		Sama_2493	0.78	+0.8
2,995,259	-		Sama_2493	0.78	+0.6
2,995,285	+		Sama_2493	0.81	+0.7
2,995,285	+		Sama_2493	0.81	-0.9
2,995,286	-		Sama_2493	0.81	+1.0
2,995,286	-		Sama_2493	0.81	-2.8