Strain Fitness in Shewanella amazonensis SB2B around Sama_2392

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
2,871,312	+		Sama_2391	0.18	-1.6
2,871,312	+		Sama_2391	0.18	+2.2
2,871,312	+		Sama_2391	0.18	+0.3
2,871,313	-		Sama_2391	0.18	-0.1
2,871,324	+		Sama_2391	0.19	-1.1
2,871,324	+		Sama_2391	0.19	-1.7
2,871,324	+		Sama_2391	0.19	-0.9
2,871,325	-		Sama_2391	0.19	+1.3
2,871,400	+		Sama_2391	0.25	+0.1
2,871,400	+		Sama_2391	0.25	+1.7
2,871,430	+		Sama_2391	0.28	-0.2
2,871,430	+		Sama_2391	0.28	-1.3
2,871,431	-		Sama_2391	0.28	-1.8
2,871,431	-		Sama_2391	0.28	-0.9
2,871,431	-		Sama_2391	0.28	-0.8
2,871,485	-		Sama_2391	0.32	-1.5
2,871,485	-		Sama_2391	0.32	+0.3
2,871,601	-		Sama_2391	0.42	-0.3
2,871,609	+		Sama_2391	0.43	-0.3
2,871,614	+		Sama_2391	0.43	-0.9
2,871,634	-		Sama_2391	0.45	+2.0
2,871,678	+		Sama_2391	0.49	+3.5
2,871,679	-		Sama_2391	0.49	-1.3
2,871,694	+		Sama_2391	0.50	-1.7
2,871,695	-		Sama_2391	0.50	+1.6
2,871,695	-		Sama_2391	0.50	-0.1
2,871,695	-		Sama_2391	0.50	+0.5
2,871,695	-		Sama_2391	0.50	-1.0
2,871,695	-		Sama_2391	0.50	+0.4
2,871,695	-		Sama_2391	0.50	-1.9
2,871,704	-		Sama_2391	0.51	-0.1
2,871,704	-		Sama_2391	0.51	+0.9
2,871,704	-		Sama_2391	0.51	-3.3
2,871,814	+		Sama_2391	0.60	+0.5
2,871,823	+		Sama_2391	0.61	-0.9
2,871,823	+		Sama_2391	0.61	+0.3
2,871,823	+		Sama_2391	0.61	-0.4
2,871,824	-		Sama_2391	0.61	+2.2
2,871,824	-		Sama_2391	0.61	+0.3
2,871,824	-		Sama_2391	0.61	+0.0
2,871,881	+		Sama_2391	0.66	+1.5
2,871,888	-		Sama_2391	0.67	+1.3
2,871,888	-		Sama_2391	0.67	+0.2
2,871,899	+		Sama_2391	0.68	+1.9
2,871,900	-		Sama_2391	0.68	+0.1
2,871,903	+		Sama_2391	0.68	-1.1
2,871,903	+		Sama_2391	0.68	-1.5
2,871,904	-		Sama_2391	0.68	+1.0
2,871,905	+		Sama_2391	0.68	+0.9
2,871,905	+		Sama_2391	0.68	+0.5
2,871,905	+		Sama_2391	0.68	+2.4
2,871,905	+		Sama_2391	0.68	-2.7
2,871,906	-		Sama_2391	0.68	+0.2
2,871,906	-		Sama_2391	0.68	+1.4
2,871,906	-		Sama_2391	0.68	+1.6
2,871,906	-		Sama_2391	0.68	-2.1
2,871,906	-		Sama_2391	0.68	+1.0
2,871,906	-		Sama_2391	0.68	+1.3
2,871,914	-		Sama_2391	0.69	-1.0
2,872,091	-		Sama_2391	0.84	+0.3
2,872,091	-		Sama_2391	0.84	-0.5
2,872,091	-		Sama_2391	0.84	+0.3
2,872,091	-		Sama_2391	0.84	+1.6
2,872,115	-		Sama_2391	0.86	+1.2
2,872,115	-		Sama_2391	0.86	-1.1
2,872,115	-		Sama_2391	0.86	-1.1
2,872,274	-				-0.1
2,872,283	+				-0.2
2,872,283	+				-1.4
2,872,283	+				+0.1
2,872,284	-				+0.4
2,872,284	-				-0.1
2,872,284	-				-0.3
2,872,284	-				-0.9
2,872,284	-				-0.5
2,872,284	-				-0.6
2,872,284	-				-0.0
2,872,284	-				+0.3
2,872,284	-				-1.8
2,872,285	+				+0.4
2,872,285	+				-0.4
2,872,286	-				-0.0
2,872,286	-				-2.5
2,872,293	-				+2.0
2,872,293	-				+0.9
2,872,293	-				-0.5
2,872,293	-				+2.4
2,872,293	-				-1.3
2,872,294	+				-2.2
2,872,305	-				+1.3
2,872,305	-				+1.7
2,872,345	-				+0.4
2,872,361	+				-1.5
2,872,362	-				-0.9
2,872,389	+				+0.2
2,872,390	-				-0.2
2,872,427	+		Sama_2392	0.10	+0.3
2,872,427	+		Sama_2392	0.10	+0.5
2,872,427	+		Sama_2392	0.10	+3.2
2,872,428	-		Sama_2392	0.10	-1.5
2,872,566	-		Sama_2392	0.20	-1.5
2,872,566	-		Sama_2392	0.20	-2.3
2,872,566	-		Sama_2392	0.20	+0.3
2,872,569	+		Sama_2392	0.20	-1.8
2,872,626	-		Sama_2392	0.24	-0.7
2,872,642	+		Sama_2392	0.25	-2.6
2,872,643	-		Sama_2392	0.25	-0.5
2,872,652	+		Sama_2392	0.26	+0.9
2,872,653	-		Sama_2392	0.26	+0.3
2,872,653	-		Sama_2392	0.26	-0.4
2,872,698	-		Sama_2392	0.29	+2.9
2,872,698	-		Sama_2392	0.29	-0.5
2,872,862	+		Sama_2392	0.40	+0.3
2,872,862	+		Sama_2392	0.40	-0.8
2,872,863	-		Sama_2392	0.40	-1.6
2,872,863	-		Sama_2392	0.40	+0.3
2,872,864	+		Sama_2392	0.40	+0.1
2,872,864	+		Sama_2392	0.40	-0.6
2,872,864	+		Sama_2392	0.40	+0.3
2,872,864	+		Sama_2392	0.40	+1.4
2,872,864	+		Sama_2392	0.40	-0.9
2,872,864	+		Sama_2392	0.40	-0.1
2,872,864	+		Sama_2392	0.40	+0.3
2,872,864	+		Sama_2392	0.40	-0.5
2,872,864	+		Sama_2392	0.40	+2.9
2,872,864	+		Sama_2392	0.40	+0.1
2,872,864	+		Sama_2392	0.40	+1.5
2,872,865	-		Sama_2392	0.40	-2.3
2,872,865	-		Sama_2392	0.40	-1.0
2,872,865	-		Sama_2392	0.40	-0.0
2,872,865	-		Sama_2392	0.40	-0.8
2,872,865	-		Sama_2392	0.40	+0.9
2,872,865	-		Sama_2392	0.40	+0.9
2,872,865	-		Sama_2392	0.40	-0.5
2,872,865	-		Sama_2392	0.40	+0.3
2,872,865	-		Sama_2392	0.40	+1.2
2,872,865	-		Sama_2392	0.40	+0.3
2,872,865	-		Sama_2392	0.40	-1.9
2,872,865	-		Sama_2392	0.40	-1.3
2,872,865	-		Sama_2392	0.40	+1.5
2,872,865	-		Sama_2392	0.40	-2.1
2,872,865	-		Sama_2392	0.40	+1.5
2,872,865	-		Sama_2392	0.40	+2.3
2,872,865	-		Sama_2392	0.40	-2.1
2,872,865	-		Sama_2392	0.40	-1.3
2,872,865	-		Sama_2392	0.40	-0.4
2,872,865	-		Sama_2392	0.40	-1.5
2,872,867	+		Sama_2392	0.40	+1.2
2,872,867	+		Sama_2392	0.40	+0.9
2,872,915	-		Sama_2392	0.44	-0.5
2,872,915	-		Sama_2392	0.44	+0.9
2,872,915	-		Sama_2392	0.44	-1.2
2,872,915	-		Sama_2392	0.44	+2.4
2,872,946	+		Sama_2392	0.46	+1.9
2,872,947	-		Sama_2392	0.46	+0.1
2,872,947	-		Sama_2392	0.46	+1.1
2,872,991	+		Sama_2392	0.49	-1.7
2,872,991	+		Sama_2392	0.49	+0.3
2,873,066	+		Sama_2392	0.54	+1.8
2,873,066	+		Sama_2392	0.54	-0.2
2,873,067	-		Sama_2392	0.54	-0.5
2,873,067	-		Sama_2392	0.54	-2.0
2,873,067	-		Sama_2392	0.54	-0.5
2,873,068	+		Sama_2392	0.54	-1.6
2,873,068	+		Sama_2392	0.54	+2.9
2,873,068	+		Sama_2392	0.54	+2.7
2,873,068	+		Sama_2392	0.54	+0.5
2,873,068	+		Sama_2392	0.54	-1.6
2,873,068	+		Sama_2392	0.54	+1.1
2,873,069	-		Sama_2392	0.54	-2.2
2,873,069	-		Sama_2392	0.54	+0.8
2,873,069	-		Sama_2392	0.54	-1.4
2,873,069	-		Sama_2392	0.54	-0.5
2,873,069	-		Sama_2392	0.54	-0.7
2,873,069	-		Sama_2392	0.54	+1.2
2,873,145	+		Sama_2392	0.60	+3.0
2,873,145	+		Sama_2392	0.60	-0.5
2,873,146	-		Sama_2392	0.60	-1.8
2,873,146	-		Sama_2392	0.60	+0.5
2,873,146	-		Sama_2392	0.60	+1.9
2,873,146	-		Sama_2392	0.60	-0.1
2,873,146	-		Sama_2392	0.60	+0.9
2,873,146	-		Sama_2392	0.60	+1.3
2,873,215	+		Sama_2392	0.64	-0.1
2,873,215	+		Sama_2392	0.64	-0.6
2,873,215	+		Sama_2392	0.64	-0.8
2,873,215	+		Sama_2392	0.64	-0.0
2,873,215	+		Sama_2392	0.64	-0.7
2,873,215	+		Sama_2392	0.64	+1.7
2,873,215	+		Sama_2392	0.64	+3.4
2,873,215	+		Sama_2392	0.64	-1.1
2,873,216	-		Sama_2392	0.64	+0.1
2,873,216	-		Sama_2392	0.64	+0.7
2,873,216	-		Sama_2392	0.64	+1.5
2,873,216	-		Sama_2392	0.64	+1.4
2,873,216	-		Sama_2392	0.64	-0.4
2,873,245	+		Sama_2392	0.66	-0.8
2,873,311	+		Sama_2392	0.71	-0.6
2,873,312	-		Sama_2392	0.71	+0.7
2,873,386	-		Sama_2392	0.76	+0.9
2,873,386	-		Sama_2392	0.76	+0.9
2,873,459	+		Sama_2392	0.81	+0.7
2,873,460	-		Sama_2392	0.81	+0.5
2,873,460	-		Sama_2392	0.81	+1.2
2,873,630	+				-1.5
2,873,631	-				+1.2
2,873,631	-				-0.1
2,873,631	-				-0.5
2,873,732	+				+1.6
2,873,732	+				+0.4
2,873,732	+				-0.7
2,873,732	+				-1.9
2,873,732	+				-0.5
2,873,732	+				-2.1
2,873,732	+				-0.9
2,873,732	+				+2.4
2,873,733	-				-0.7
2,873,733	-				-1.8
2,873,733	-				-1.9
2,873,733	-				+0.1
2,873,733	-				-1.3
2,873,733	-				+1.9
2,873,733	-				+0.9
2,873,733	-				+0.5
2,873,733	-				+0.5
2,873,733	-				+0.4
2,873,733	-				+2.9
2,873,733	-				-0.8
2,873,733	-				-1.6
2,873,733	-				-0.9
2,873,797	+				+0.9
2,873,799	+				+1.0
2,873,848	-				-1.2
2,873,872	-				-1.3
2,873,890	+				+1.5
2,873,897	-				-0.1
2,873,960	-				+0.4
2,874,021	+				-0.6
2,874,021	+				+0.3
2,874,022	-				-1.5
2,874,022	-				+1.7
2,874,022	-				-0.1
2,874,022	-				+1.4
2,874,022	-				+0.1
2,874,022	-				-1.6
2,874,022	-				+0.7
2,874,137	+		Sama_2393	0.14	-0.4
2,874,138	-		Sama_2393	0.14	+2.1
2,874,138	-		Sama_2393	0.14	+1.1
2,874,138	-		Sama_2393	0.14	+0.8
2,874,196	-		Sama_2393	0.16	+1.9
2,874,196	-		Sama_2393	0.16	-0.0
2,874,234	+		Sama_2393	0.17	-0.5
2,874,234	+		Sama_2393	0.17	-1.8
2,874,235	-		Sama_2393	0.17	-1.6
2,874,246	+		Sama_2393	0.18	+0.1
2,874,280	+		Sama_2393	0.19	-0.7
2,874,280	+		Sama_2393	0.19	+0.5
2,874,281	-		Sama_2393	0.19	+1.5
2,874,307	+		Sama_2393	0.20	+1.1
2,874,326	+		Sama_2393	0.21	-1.7
2,874,326	+		Sama_2393	0.21	-2.2
2,874,326	+		Sama_2393	0.21	+0.3
2,874,327	-		Sama_2393	0.21	+2.6
2,874,327	-		Sama_2393	0.21	-1.4
2,874,327	-		Sama_2393	0.21	+0.3
2,874,327	-		Sama_2393	0.21	-0.8
2,874,347	-		Sama_2393	0.22	+0.0
2,874,387	-		Sama_2393	0.23	-0.3
2,874,387	-		Sama_2393	0.23	+0.0
2,874,426	-		Sama_2393	0.25	+0.7
2,874,441	+		Sama_2393	0.25	+0.2
2,874,450	+		Sama_2393	0.26	+1.4
2,874,450	+		Sama_2393	0.26	-1.4
2,874,451	-		Sama_2393	0.26	-0.4
2,874,460	+		Sama_2393	0.26	-1.1
2,874,460	+		Sama_2393	0.26	+0.9
2,874,461	-		Sama_2393	0.26	+0.3
2,874,538	+		Sama_2393	0.29	+3.7
2,874,538	+		Sama_2393	0.29	+1.6
2,874,539	-		Sama_2393	0.29	-1.3
2,874,539	-		Sama_2393	0.29	-0.4
2,874,539	-		Sama_2393	0.29	+0.4
2,874,542	+		Sama_2393	0.29	+1.3
2,874,542	+		Sama_2393	0.29	-1.0
2,874,542	+		Sama_2393	0.29	-0.9
2,874,628	+		Sama_2393	0.32	-1.4
2,874,628	+		Sama_2393	0.32	+0.9
2,874,628	+		Sama_2393	0.32	+0.4
2,874,629	-		Sama_2393	0.33	-0.4
2,874,629	-		Sama_2393	0.33	+0.3
2,874,633	+		Sama_2393	0.33	+0.6
2,874,633	+		Sama_2393	0.33	+1.6
2,874,634	-		Sama_2393	0.33	-0.7
2,874,634	-		Sama_2393	0.33	-0.0