Strain Fitness in Shewanella amazonensis SB2B around Sama_2379

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
2,855,723	-		Sama_2377	0.42	-0.7
2,855,737	+		Sama_2377	0.44	+0.6
2,855,737	+		Sama_2377	0.44	-0.6
2,855,737	+		Sama_2377	0.44	-1.3
2,855,737	+		Sama_2377	0.44	+0.7
2,855,738	-		Sama_2377	0.44	-1.2
2,856,052	+		Sama_2377	0.82	+2.8
2,856,052	+		Sama_2377	0.82	+1.5
2,856,053	-		Sama_2377	0.82	-0.0
2,856,149	-				-1.0
2,856,159	+				+0.8
2,856,160	-				+1.7
2,856,199	+				+0.3
2,856,199	+				-1.0
2,856,199	+				-1.2
2,856,199	+				-2.1
2,856,199	+				-0.0
2,856,199	+				-1.5
2,856,199	+				-1.0
2,856,200	-				-1.3
2,856,200	-				+0.8
2,856,200	-				+0.9
2,856,200	-				-1.3
2,856,219	-				-1.6
2,856,219	-				-1.5
2,856,241	-				-1.2
2,856,286	+		Sama_2378	0.11	+0.7
2,856,286	+		Sama_2378	0.11	-2.4
2,856,358	+		Sama_2378	0.26	+0.5
2,856,359	-		Sama_2378	0.26	+1.3
2,856,371	+		Sama_2378	0.29	+2.2
2,856,383	+		Sama_2378	0.31	+1.1
2,856,384	-		Sama_2378	0.31	+0.7
2,856,384	-		Sama_2378	0.31	-0.5
2,856,384	-		Sama_2378	0.31	+0.8
2,856,452	+		Sama_2378	0.46	+1.3
2,856,453	-		Sama_2378	0.46	-1.4
2,856,479	+		Sama_2378	0.52	+0.6
2,856,480	-		Sama_2378	0.52	-0.5
2,856,517	+		Sama_2378	0.60	-0.3
2,856,540	+		Sama_2378	0.65	-0.7
2,856,540	+		Sama_2378	0.65	+0.1
2,856,541	-		Sama_2378	0.65	-0.5
2,856,541	-		Sama_2378	0.65	+0.4
2,856,541	-		Sama_2378	0.65	-1.6
2,856,541	-		Sama_2378	0.65	+1.5
2,856,542	+		Sama_2378	0.65	+1.4
2,856,542	+		Sama_2378	0.65	-1.6
2,856,542	+		Sama_2378	0.65	+1.8
2,856,542	+		Sama_2378	0.65	-0.3
2,856,542	+		Sama_2378	0.65	-0.6
2,856,543	-		Sama_2378	0.65	-1.6
2,856,543	-		Sama_2378	0.65	+1.8
2,856,543	-		Sama_2378	0.65	+0.3
2,856,543	-		Sama_2378	0.65	+1.5
2,856,543	-		Sama_2378	0.65	+0.5
2,856,543	-		Sama_2378	0.65	-1.3
2,856,543	-		Sama_2378	0.65	-0.2
2,856,543	-		Sama_2378	0.65	+1.7
2,856,544	+		Sama_2378	0.65	+0.8
2,856,554	+		Sama_2378	0.68	+0.8
2,856,587	-		Sama_2378	0.75	+1.4
2,856,618	-		Sama_2378	0.81	+1.6
2,856,618	-		Sama_2378	0.81	-2.2
2,856,618	-		Sama_2378	0.81	+0.4
2,856,618	-		Sama_2378	0.81	+0.8
2,856,648	+		Sama_2378	0.87	-0.1
2,856,648	+		Sama_2378	0.87	+0.8
2,856,648	+		Sama_2378	0.87	+0.8
2,856,648	+		Sama_2378	0.87	+0.5
2,856,649	-		Sama_2378	0.88	-0.2
2,856,649	-		Sama_2378	0.88	-1.2
2,856,649	-		Sama_2378	0.88	+1.5
2,856,745	-				+0.3
2,856,745	-				+0.7
2,856,809	+				+0.3
2,856,809	+				+1.5
2,856,820	+				-0.6
2,856,821	-				-0.7
2,856,822	+				+2.1
2,856,938	-		Sama_2379	0.16	-1.6
2,856,949	+		Sama_2379	0.17	-0.7
2,856,950	-		Sama_2379	0.17	-0.5
2,856,987	+		Sama_2379	0.20	+0.9
2,856,987	+		Sama_2379	0.20	+0.3
2,856,997	+		Sama_2379	0.20	+1.7
2,857,111	+		Sama_2379	0.28	-0.5
2,857,111	+		Sama_2379	0.28	-0.1
2,857,111	+		Sama_2379	0.28	+0.3
2,857,112	-		Sama_2379	0.28	-1.7
2,857,112	-		Sama_2379	0.28	+3.1
2,857,114	+		Sama_2379	0.28	-1.1
2,857,114	+		Sama_2379	0.28	+4.2
2,857,115	-		Sama_2379	0.28	+0.6
2,857,201	+		Sama_2379	0.34	+0.4
2,857,201	+		Sama_2379	0.34	+1.6
2,857,291	+		Sama_2379	0.40	-0.1
2,857,292	-		Sama_2379	0.40	+1.4
2,857,304	+		Sama_2379	0.41	+0.5
2,857,546	-		Sama_2379	0.58	+0.3
2,857,609	+		Sama_2379	0.62	-1.7
2,857,703	+		Sama_2379	0.68	+1.0
2,857,704	-		Sama_2379	0.68	-2.0
2,857,704	-		Sama_2379	0.68	-0.5
2,857,704	-		Sama_2379	0.68	+1.2
2,857,706	-		Sama_2379	0.69	-1.1
2,857,706	-		Sama_2379	0.69	-0.7
2,857,719	+		Sama_2379	0.69	+1.0
2,857,719	+		Sama_2379	0.69	+0.4
2,857,720	-		Sama_2379	0.70	+0.9
2,857,820	+		Sama_2379	0.76	-0.5
2,857,821	-		Sama_2379	0.76	-1.5
2,857,875	+		Sama_2379	0.80	-0.2
2,857,876	-		Sama_2379	0.80	-1.0
2,857,878	+		Sama_2379	0.80	-0.2
2,857,878	+		Sama_2379	0.80	-1.1
2,857,878	+		Sama_2379	0.80	+0.9
2,857,879	-		Sama_2379	0.80	+0.6
2,857,879	-		Sama_2379	0.80	+1.9
2,857,879	-		Sama_2379	0.80	-1.0
2,857,879	-		Sama_2379	0.80	+0.9
2,857,884	+		Sama_2379	0.81	+0.6
2,857,885	-		Sama_2379	0.81	+2.4
2,857,897	-		Sama_2379	0.82	+0.6
2,857,897	-		Sama_2379	0.82	+1.5
2,857,956	+		Sama_2379	0.86	+1.0
2,857,957	-		Sama_2379	0.86	+0.5
2,857,958	+		Sama_2379	0.86	+0.9
2,857,959	-		Sama_2379	0.86	+0.7
2,857,959	-		Sama_2379	0.86	-1.3
2,857,959	-		Sama_2379	0.86	-1.2
2,858,037	+				-0.8
2,858,078	-				+1.6
2,858,130	-				-0.9
2,858,181	+				+0.1
2,858,182	-				-1.0
2,858,204	-				-2.7
2,858,204	-				-2.1
2,858,204	-				+2.1
2,858,247	+				-0.3
2,858,410	-				+1.6
2,858,410	-				-0.9
2,858,427	-				-1.7
2,858,496	+				+0.3
2,858,497	-				+0.6
2,858,497	-				-0.2
2,858,497	-				+2.4
2,858,553	+				-1.6
2,858,553	+				+1.1
2,858,553	+				+2.7
2,858,553	+				+2.2
2,858,553	+				-0.9
2,858,553	+				-2.9
2,858,554	-				+0.4
2,858,554	-				+0.3
2,858,554	-				-2.1
2,858,554	-				+0.2
2,858,554	-				-1.5
2,858,554	-				-0.1
2,858,554	-				+0.6
2,858,554	-				-1.3
2,858,556	-				+1.9
2,858,563	-		Sama_2380	0.10	+1.4
2,858,599	+		Sama_2380	0.13	-1.5
2,858,599	+		Sama_2380	0.13	-1.2
2,858,600	-		Sama_2380	0.13	+0.1
2,858,600	-		Sama_2380	0.13	-0.1
2,858,600	-		Sama_2380	0.13	-0.3
2,858,600	-		Sama_2380	0.13	+3.4
2,858,600	-		Sama_2380	0.13	-0.6
2,858,600	-		Sama_2380	0.13	-0.7
2,858,600	-		Sama_2380	0.13	-0.1
2,858,600	-		Sama_2380	0.13	-1.7
2,858,603	+		Sama_2380	0.13	+0.7
2,858,603	+		Sama_2380	0.13	-2.7
2,858,603	+		Sama_2380	0.13	+0.7
2,858,603	+		Sama_2380	0.13	-0.5
2,858,603	+		Sama_2380	0.13	+1.5
2,858,603	+		Sama_2380	0.13	-0.5
2,858,604	-		Sama_2380	0.13	+0.9
2,858,604	-		Sama_2380	0.13	-1.3
2,858,604	-		Sama_2380	0.13	-0.9
2,858,604	-		Sama_2380	0.13	-0.9
2,858,636	+		Sama_2380	0.16	-2.7
2,858,664	+		Sama_2380	0.18	-0.7
2,858,664	+		Sama_2380	0.18	+2.6
2,858,664	+		Sama_2380	0.18	+2.2
2,858,664	+		Sama_2380	0.18	-0.5
2,858,665	-		Sama_2380	0.18	+0.3
2,858,665	-		Sama_2380	0.18	+0.2
2,858,665	-		Sama_2380	0.18	-2.2
2,858,665	-		Sama_2380	0.18	+0.2
2,858,665	-		Sama_2380	0.18	-0.5
2,858,665	-		Sama_2380	0.18	-0.2
2,858,697	-		Sama_2380	0.20	-2.8
2,858,697	-		Sama_2380	0.20	+0.8
2,858,702	+		Sama_2380	0.21	-0.1
2,858,703	-		Sama_2380	0.21	+1.2
2,858,703	-		Sama_2380	0.21	+0.7
2,858,787	+		Sama_2380	0.27	-1.5
2,858,787	+		Sama_2380	0.27	+0.0
2,858,787	+		Sama_2380	0.27	-0.1
2,858,787	+		Sama_2380	0.27	+3.9
2,858,787	+		Sama_2380	0.27	+2.0
2,858,788	-		Sama_2380	0.27	-0.2
2,858,790	-		Sama_2380	0.27	+0.3
2,858,790	-		Sama_2380	0.27	+0.8
2,858,790	-		Sama_2380	0.27	+0.9
2,858,790	-		Sama_2380	0.27	+0.2
2,858,790	-		Sama_2380	0.27	-1.1
2,858,811	-		Sama_2380	0.29	+0.4
2,858,811	-		Sama_2380	0.29	-1.7
2,858,811	-		Sama_2380	0.29	-1.7
2,858,811	-		Sama_2380	0.29	+0.2
2,858,891	+		Sama_2380	0.35	-2.0
2,858,892	-		Sama_2380	0.35	+1.1
2,858,901	-		Sama_2380	0.36	+2.9
2,858,948	+		Sama_2380	0.39	+0.9
2,858,949	-		Sama_2380	0.39	+3.2
2,858,993	+		Sama_2380	0.43	+2.7
2,858,994	-		Sama_2380	0.43	+0.6
2,859,062	-		Sama_2380	0.48	+0.7
2,859,070	+		Sama_2380	0.49	+1.9
2,859,070	+		Sama_2380	0.49	-1.5
2,859,070	+		Sama_2380	0.49	+1.6
2,859,070	+		Sama_2380	0.49	-0.5
2,859,071	-		Sama_2380	0.49	-1.0
2,859,071	-		Sama_2380	0.49	-1.6