Strain Fitness in Shewanella amazonensis SB2B around Sama_2339

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
2,804,944	+		Sama_2337	0.86	-2.5
2,805,051	+		Sama_2337	0.90	-0.5
2,805,052	-		Sama_2337	0.90	-2.4
2,805,063	+				-0.7
2,805,063	+				-0.7
2,805,063	+				-1.2
2,805,064	-				-0.5
2,805,064	-				-3.2
2,805,064	-				-1.3
2,805,066	+				-1.0
2,805,089	+				-1.5
2,805,089	+				-1.7
2,805,089	+				-1.3
2,805,089	+				-2.6
2,805,105	+				+0.8
2,805,105	+				-2.3
2,805,126	+				-1.7
2,805,126	+				-3.3
2,805,127	-				-0.3
2,805,136	-				-0.5
2,805,143	+				+0.3
2,805,143	+				-1.2
2,805,143	+				-1.2
2,805,143	+				-1.7
2,805,143	+				-0.5
2,805,143	+				-0.6
2,805,143	+				-0.6
2,805,143	+				-0.7
2,805,144	-				-2.8
2,805,147	+				+1.8
2,805,189	-				-2.6
2,805,189	-				-1.6
2,805,189	-				-1.5
2,805,276	+				-1.0
2,805,291	+				-2.1
2,805,300	+				-2.0
2,805,337	-				-2.0
2,805,338	+				-1.1
2,805,339	-				+0.3
2,805,355	-				-0.8
2,805,355	-				+2.4
2,805,490	+		Sama_2338	0.19	+0.1
2,805,490	+		Sama_2338	0.19	+0.6
2,805,490	+		Sama_2338	0.19	+0.9
2,805,491	-		Sama_2338	0.19	-0.2
2,805,491	-		Sama_2338	0.19	-0.4
2,805,495	-		Sama_2338	0.20	-0.0
2,805,508	+		Sama_2338	0.23	+1.1
2,805,509	-		Sama_2338	0.23	+0.3
2,805,547	+		Sama_2338	0.31	+0.8
2,805,547	+		Sama_2338	0.31	+0.5
2,805,717	-		Sama_2338	0.66	+1.8
2,805,725	+		Sama_2338	0.68	+1.8
2,805,725	+		Sama_2338	0.68	-0.7
2,805,726	-		Sama_2338	0.68	-1.0
2,805,759	+		Sama_2338	0.75	-0.8
2,805,759	+		Sama_2338	0.75	-0.5
2,805,876	-				-1.2
2,805,878	+				-1.2
2,805,882	+				-1.4
2,805,883	-				+1.2
2,805,932	+				-0.7
2,805,959	-				-0.3
2,806,001	+		Sama_2339	0.12	-2.1
2,806,003	+		Sama_2339	0.13	-1.9
2,806,041	+		Sama_2339	0.20	+0.5
2,806,041	+		Sama_2339	0.20	+1.6
2,806,042	-		Sama_2339	0.20	+0.8
2,806,042	-		Sama_2339	0.20	+0.5
2,806,042	-		Sama_2339	0.20	+0.8
2,806,087	+		Sama_2339	0.28	+0.4
2,806,087	+		Sama_2339	0.28	-2.6
2,806,089	+		Sama_2339	0.28	-0.4
2,806,090	-		Sama_2339	0.28	+1.8
2,806,104	+		Sama_2339	0.31	-0.2
2,806,105	-		Sama_2339	0.31	+0.3
2,806,109	-		Sama_2339	0.32	+0.3
2,806,109	-		Sama_2339	0.32	-2.0
2,806,187	+		Sama_2339	0.46	+0.8
2,806,217	+		Sama_2339	0.51	-0.7
2,806,217	+		Sama_2339	0.51	-0.1
2,806,217	+		Sama_2339	0.51	-0.3
2,806,286	+		Sama_2339	0.64	-4.0
2,806,287	-		Sama_2339	0.64	-0.7
2,806,287	-		Sama_2339	0.64	+0.5
2,806,287	-		Sama_2339	0.64	-0.3
2,806,287	-		Sama_2339	0.64	+0.1
2,806,385	+		Sama_2339	0.82	-1.6
2,806,385	+		Sama_2339	0.82	+0.4
2,806,386	-		Sama_2339	0.82	+0.2
2,806,386	-		Sama_2339	0.82	-0.5
2,806,390	+		Sama_2339	0.83	+0.3
2,806,390	+		Sama_2339	0.83	-0.5
2,806,390	+		Sama_2339	0.83	+0.8
2,806,390	+		Sama_2339	0.83	-2.0
2,806,390	+		Sama_2339	0.83	-1.0
2,806,391	-		Sama_2339	0.83	-1.1
2,806,391	-		Sama_2339	0.83	+4.4
2,806,391	-		Sama_2339	0.83	+0.9
2,806,391	-		Sama_2339	0.83	+3.1
2,806,391	-		Sama_2339	0.83	+2.8
2,806,460	+				+0.7
2,806,461	-				+1.1
2,806,560	-				-1.2
2,806,569	+				+3.3
2,806,569	+				+1.8
2,806,570	-				-1.2
2,806,570	-				-0.4
2,806,590	+				-0.1
2,806,692	+		Sama_2340	0.10	-0.2
2,806,692	+		Sama_2340	0.10	+0.8
2,806,692	+		Sama_2340	0.10	+0.5
2,806,693	-		Sama_2340	0.10	-1.7
2,806,693	-		Sama_2340	0.10	-1.0
2,806,693	-		Sama_2340	0.10	+0.8
2,806,697	-		Sama_2340	0.11	-0.7
2,806,697	-		Sama_2340	0.11	+0.1
2,806,697	-		Sama_2340	0.11	-1.5
2,806,697	-		Sama_2340	0.11	-1.2
2,806,707	-		Sama_2340	0.12	+2.6
2,806,849	-		Sama_2340	0.26	+0.3
2,806,849	-		Sama_2340	0.26	-2.4
2,806,853	-		Sama_2340	0.26	-0.7
2,806,853	-		Sama_2340	0.26	+0.3
2,806,930	+		Sama_2340	0.34	-0.3
2,806,931	-		Sama_2340	0.34	+0.6
2,806,931	-		Sama_2340	0.34	-3.4
2,806,960	+		Sama_2340	0.37	+0.3
2,806,961	-		Sama_2340	0.37	+0.0
2,806,961	-		Sama_2340	0.37	-0.6
2,806,964	+		Sama_2340	0.38	-0.5
2,806,964	+		Sama_2340	0.38	-1.7
2,806,965	-		Sama_2340	0.38	-0.2
2,806,965	-		Sama_2340	0.38	+0.3
2,806,965	-		Sama_2340	0.38	-0.7
2,806,965	-		Sama_2340	0.38	+0.5
2,806,977	+		Sama_2340	0.39	+1.0
2,806,978	-		Sama_2340	0.39	+0.8
2,806,981	+		Sama_2340	0.39	+0.0
2,806,982	-		Sama_2340	0.39	+0.8
2,806,982	-		Sama_2340	0.39	+0.9
2,806,982	-		Sama_2340	0.39	+1.5
2,807,003	-		Sama_2340	0.41	+0.7
2,807,003	-		Sama_2340	0.41	-0.2
2,807,013	+		Sama_2340	0.42	+1.3
2,807,013	+		Sama_2340	0.42	+0.3
2,807,013	+		Sama_2340	0.42	-1.2
2,807,083	+		Sama_2340	0.49	-1.3
2,807,084	-		Sama_2340	0.50	+0.8
2,807,084	-		Sama_2340	0.50	+1.0
2,807,086	-		Sama_2340	0.50	+1.5
2,807,086	-		Sama_2340	0.50	+1.8
2,807,086	-		Sama_2340	0.50	-1.4
2,807,108	-		Sama_2340	0.52	+0.3
2,807,110	-		Sama_2340	0.52	-2.4
2,807,110	-		Sama_2340	0.52	-2.6
2,807,154	+		Sama_2340	0.57	+1.1
2,807,154	+		Sama_2340	0.57	-0.6
2,807,154	+		Sama_2340	0.57	+0.8
2,807,155	-		Sama_2340	0.57	+1.2
2,807,155	-		Sama_2340	0.57	+0.1
2,807,155	-		Sama_2340	0.57	-1.3
2,807,158	+		Sama_2340	0.57	+1.3
2,807,158	+		Sama_2340	0.57	-1.9
2,807,158	+		Sama_2340	0.57	+0.6
2,807,159	-		Sama_2340	0.57	+0.6
2,807,159	-		Sama_2340	0.57	+0.5
2,807,159	-		Sama_2340	0.57	+1.7
2,807,238	+		Sama_2340	0.65	-1.2
2,807,269	+		Sama_2340	0.68	-1.0
2,807,270	-		Sama_2340	0.68	-0.6
2,807,270	-		Sama_2340	0.68	+1.5
2,807,302	+		Sama_2340	0.71	-0.5
2,807,302	+		Sama_2340	0.71	-1.3
2,807,302	+		Sama_2340	0.71	-2.6
2,807,302	+		Sama_2340	0.71	+2.6
2,807,302	+		Sama_2340	0.71	+1.6
2,807,303	-		Sama_2340	0.71	+0.5
2,807,303	-		Sama_2340	0.71	-1.2
2,807,303	-		Sama_2340	0.71	-2.2
2,807,303	-		Sama_2340	0.71	+1.8
2,807,303	-		Sama_2340	0.71	-0.0
2,807,303	-		Sama_2340	0.71	+2.4
2,807,303	-		Sama_2340	0.71	-1.3
2,807,303	-		Sama_2340	0.71	+0.3
2,807,303	-		Sama_2340	0.71	+1.4
2,807,304	+		Sama_2340	0.72	-0.7
2,807,304	+		Sama_2340	0.72	+1.4
2,807,304	+		Sama_2340	0.72	-1.2
2,807,304	+		Sama_2340	0.72	+0.8
2,807,304	+		Sama_2340	0.72	+0.3
2,807,304	+		Sama_2340	0.72	+2.1
2,807,305	-		Sama_2340	0.72	-1.6
2,807,305	-		Sama_2340	0.72	+0.7
2,807,305	-		Sama_2340	0.72	-0.1
2,807,305	-		Sama_2340	0.72	+1.5
2,807,305	-		Sama_2340	0.72	-0.6
2,807,358	+		Sama_2340	0.77	-1.0
2,807,359	-		Sama_2340	0.77	-1.0
2,807,413	+		Sama_2340	0.82	+2.0
2,807,468	-		Sama_2340	0.88	-0.6
2,807,468	-		Sama_2340	0.88	-1.1