Strain Fitness in Shewanella amazonensis SB2B around Sama_2329

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
2,793,927	-		Sama_2328	0.20	-1.0
2,793,932	+		Sama_2328	0.20	-3.1
2,793,932	+		Sama_2328	0.20	-2.7
2,793,932	+		Sama_2328	0.20	-1.9
2,793,933	-		Sama_2328	0.20	-1.7
2,793,934	+		Sama_2328	0.20	-1.5
2,793,934	+		Sama_2328	0.20	-0.7
2,793,934	+		Sama_2328	0.20	-2.0
2,793,934	+		Sama_2328	0.20	-1.0
2,793,935	-		Sama_2328	0.20	+0.3
2,793,935	-		Sama_2328	0.20	-0.7
2,793,967	+		Sama_2328	0.23	-2.6
2,793,967	+		Sama_2328	0.23	+0.8
2,793,969	+		Sama_2328	0.23	-1.3
2,793,969	+		Sama_2328	0.23	-2.7
2,793,969	+		Sama_2328	0.23	-2.9
2,793,969	+		Sama_2328	0.23	-1.6
2,793,969	+		Sama_2328	0.23	-2.1
2,793,970	-		Sama_2328	0.23	-1.5
2,793,970	-		Sama_2328	0.23	-2.0
2,794,009	+		Sama_2328	0.27	+0.8
2,794,009	+		Sama_2328	0.27	-4.3
2,794,010	-		Sama_2328	0.27	-1.7
2,794,013	+		Sama_2328	0.27	-2.1
2,794,014	-		Sama_2328	0.27	-0.5
2,794,019	+		Sama_2328	0.27	-2.2
2,794,019	+		Sama_2328	0.27	-3.2
2,794,019	+		Sama_2328	0.27	-0.7
2,794,020	-		Sama_2328	0.27	-0.7
2,794,028	-		Sama_2328	0.28	-1.2
2,794,089	+		Sama_2328	0.33	-0.5
2,794,089	+		Sama_2328	0.33	-1.0
2,794,089	+		Sama_2328	0.33	-0.5
2,794,095	+		Sama_2328	0.34	-2.2
2,794,096	-		Sama_2328	0.34	-2.3
2,794,096	-		Sama_2328	0.34	-2.1
2,794,096	-		Sama_2328	0.34	+0.3
2,794,096	-		Sama_2328	0.34	-1.6
2,794,096	-		Sama_2328	0.34	-2.5
2,794,195	+		Sama_2328	0.42	-0.7
2,794,195	+		Sama_2328	0.42	-2.3
2,794,195	+		Sama_2328	0.42	-2.3
2,794,196	-		Sama_2328	0.42	-1.2
2,794,196	-		Sama_2328	0.42	-0.2
2,794,196	-		Sama_2328	0.42	-1.2
2,794,279	+		Sama_2328	0.49	-1.0
2,794,280	-		Sama_2328	0.49	-2.1
2,794,312	+		Sama_2328	0.52	-0.7
2,794,312	+		Sama_2328	0.52	-1.9
2,794,312	+		Sama_2328	0.52	-1.6
2,794,312	+		Sama_2328	0.52	-1.2
2,794,312	+		Sama_2328	0.52	-1.5
2,794,313	-		Sama_2328	0.52	-1.7
2,794,329	+		Sama_2328	0.54	-0.7
2,794,330	-		Sama_2328	0.54	-2.6
2,794,330	-		Sama_2328	0.54	-2.2
2,794,401	+		Sama_2328	0.60	-1.6
2,794,401	+		Sama_2328	0.60	-1.7
2,794,402	-		Sama_2328	0.60	-0.2
2,794,402	-		Sama_2328	0.60	-1.6
2,794,420	+		Sama_2328	0.61	-1.7
2,794,420	+		Sama_2328	0.61	-1.7
2,794,420	+		Sama_2328	0.61	-2.2
2,794,420	+		Sama_2328	0.61	-0.9
2,794,421	-		Sama_2328	0.61	-1.6
2,794,421	-		Sama_2328	0.61	-2.5
2,794,425	+		Sama_2328	0.62	-1.5
2,794,426	-		Sama_2328	0.62	-2.2
2,794,493	-		Sama_2328	0.68	-1.5
2,794,493	-		Sama_2328	0.68	-1.0
2,794,505	+		Sama_2328	0.69	+1.8
2,794,505	+		Sama_2328	0.69	-2.5
2,794,506	-		Sama_2328	0.69	-3.3
2,794,721	+		Sama_2328	0.87	-1.6
2,794,722	-		Sama_2328	0.87	-2.7
2,794,853	-				-1.5
2,794,856	+				-2.6
2,794,856	+				+0.8
2,794,856	+				-2.2
2,794,867	+				-3.0
2,794,867	+				-1.5
2,794,867	+				-2.7
2,794,868	-				-1.6
2,794,915	+				-2.0
2,794,916	-				-2.2
2,794,924	+				-2.0
2,794,924	+				-2.2
2,794,924	+				-1.3
2,794,924	+				-2.6
2,794,924	+				-2.9
2,794,924	+				-3.3
2,794,924	+				-1.7
2,794,924	+				-2.9
2,794,925	-				-1.0
2,794,925	-				-3.1
2,794,925	-				-0.5
2,794,925	-				-1.5
2,794,926	+				+1.8
2,794,926	+				-1.6
2,794,927	-				-0.5
2,794,927	-				-1.0
2,794,927	-				-3.7
2,794,927	-				-3.1
2,794,990	+				-2.5
2,794,990	+				-1.3
2,794,990	+				-1.2
2,794,991	-				-2.5
2,795,002	+				+1.8
2,795,002	+				-0.5
2,795,002	+				-0.5
2,795,002	+				-2.6
2,795,034	+		Sama_2329	0.13	-2.0
2,795,035	-		Sama_2329	0.13	-0.2
2,795,035	-		Sama_2329	0.13	-2.0
2,795,120	+		Sama_2329	0.20	-3.4
2,795,121	-		Sama_2329	0.20	-2.2
2,795,121	-		Sama_2329	0.20	-1.9
2,795,210	+		Sama_2329	0.28	-2.0
2,795,211	-		Sama_2329	0.28	-0.7
2,795,211	-		Sama_2329	0.28	+2.1
2,795,228	-		Sama_2329	0.29	-2.2
2,795,228	-		Sama_2329	0.29	-1.2
2,795,237	+		Sama_2329	0.30	-2.0
2,795,237	+		Sama_2329	0.30	-2.8
2,795,237	+		Sama_2329	0.30	-1.3
2,795,348	+		Sama_2329	0.40	-1.3
2,795,466	+		Sama_2329	0.50	-2.6
2,795,467	-		Sama_2329	0.50	-0.5
2,795,467	-		Sama_2329	0.50	-1.3
2,795,469	+		Sama_2329	0.50	-1.7
2,795,469	+		Sama_2329	0.50	-2.3
2,795,469	+		Sama_2329	0.50	-2.8
2,795,528	+		Sama_2329	0.55	-1.3
2,795,555	+		Sama_2329	0.58	-1.0
2,795,556	-		Sama_2329	0.58	+0.3
2,795,620	+		Sama_2329	0.63	-2.6
2,795,621	-		Sama_2329	0.63	-3.1
2,795,661	-		Sama_2329	0.67	-2.1
2,795,675	+		Sama_2329	0.68	-1.3
2,795,675	+		Sama_2329	0.68	-0.7
2,795,676	-		Sama_2329	0.68	-2.3
2,795,676	-		Sama_2329	0.68	-1.7
2,795,676	-		Sama_2329	0.68	-1.3
2,795,678	+		Sama_2329	0.68	-2.8
2,795,678	+		Sama_2329	0.68	-0.2
2,795,679	-		Sama_2329	0.68	-1.9
2,795,679	-		Sama_2329	0.68	-2.1
2,795,716	+		Sama_2329	0.72	-0.5
2,795,724	+		Sama_2329	0.72	+0.8
2,795,724	+		Sama_2329	0.72	-1.3
2,795,725	-		Sama_2329	0.72	-2.5
2,795,768	-		Sama_2329	0.76	-1.6
2,795,768	-		Sama_2329	0.76	-2.3
2,795,808	+		Sama_2329	0.80	-2.6
2,795,809	-		Sama_2329	0.80	-0.7
2,795,809	-		Sama_2329	0.80	-2.7
2,795,819	+		Sama_2329	0.80	+2.4
2,795,819	+		Sama_2329	0.80	-0.7
2,795,820	-		Sama_2329	0.81	-1.7
2,795,820	-		Sama_2329	0.81	-1.3
2,795,872	+		Sama_2329	0.85	-1.0
2,795,900	+		Sama_2329	0.87	-2.2
2,795,900	+		Sama_2329	0.87	-2.4
2,795,900	+		Sama_2329	0.87	-1.2
2,795,943	+				-3.2
2,795,943	+				-3.2
2,795,943	+				-2.4
2,795,944	-				-1.9
2,795,944	-				-1.0
2,795,944	-				-0.7
2,795,949	+				-0.7
2,795,949	+				-2.6
2,795,949	+				-1.9
2,795,950	-				-1.3
2,795,950	-				-3.1
2,796,062	+				-0.2
2,796,072	+				+0.3
2,796,077	-				-1.3
2,796,093	+				-1.6
2,796,094	-				-0.3
2,796,103	+				+1.8
2,796,132	+				-1.6
2,796,133	-				-0.5
2,796,194	+		Sama_2330	0.16	-1.6
2,796,210	-		Sama_2330	0.17	-1.7
2,796,221	+		Sama_2330	0.18	-1.0
2,796,222	-		Sama_2330	0.18	-2.0
2,796,242	-		Sama_2330	0.20	-2.7
2,796,265	-		Sama_2330	0.23	-0.7
2,796,330	+		Sama_2330	0.29	-2.2
2,796,331	-		Sama_2330	0.29	-3.1
2,796,334	-		Sama_2330	0.29	-1.2
2,796,399	+		Sama_2330	0.36	-2.3
2,796,400	-		Sama_2330	0.36	-1.0
2,796,466	+		Sama_2330	0.43	-0.7
2,796,559	+		Sama_2330	0.52	-2.3
2,796,568	-		Sama_2330	0.53	-2.8
2,796,675	+		Sama_2330	0.63	-1.6
2,796,679	+		Sama_2330	0.64	-2.2
2,796,704	+		Sama_2330	0.66	-1.7
2,796,705	-		Sama_2330	0.66	-1.9
2,796,732	-		Sama_2330	0.69	-1.2
2,796,752	+		Sama_2330	0.71	-1.7
2,796,772	+		Sama_2330	0.73	-1.5
2,796,773	-		Sama_2330	0.73	-1.7
2,796,773	-		Sama_2330	0.73	-1.2
2,796,879	+		Sama_2330	0.84	-0.7
2,796,885	+		Sama_2330	0.84	-1.9
2,796,906	-		Sama_2330	0.86	-0.2
2,797,017	+				-0.1