Strain Fitness in Shewanella amazonensis SB2B around Sama_2319

Experiment: Motility assay, center cut sample 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 1
2,783,000	-				-1.2
2,783,006	-				-3.6
2,783,022	+				-2.4
2,783,023	-				-1.0
2,783,077	-				-1.2
2,783,077	-				-0.5
2,783,077	-				-0.8
2,783,178	+	flgC	Sama_2317	0.32	-0.8
2,783,217	-	flgC	Sama_2317	0.42	-3.1
2,783,235	+	flgC	Sama_2317	0.46	-2.6
2,783,236	-	flgC	Sama_2317	0.46	-1.6
2,783,248	+	flgC	Sama_2317	0.49	-1.2
2,783,248	+	flgC	Sama_2317	0.49	-0.8
2,783,249	-	flgC	Sama_2317	0.50	-2.9
2,783,334	-	flgC	Sama_2317	0.70	-3.2
2,783,446	-				-0.8
2,783,472	-				-1.0
2,783,474	+				-0.8
2,783,487	-				-2.3
2,783,547	-	flgB	Sama_2318	0.22	-1.0
2,783,547	-	flgB	Sama_2318	0.22	-2.5
2,783,582	+	flgB	Sama_2318	0.31	-0.8
2,783,582	+	flgB	Sama_2318	0.31	-2.4
2,783,583	-	flgB	Sama_2318	0.31	-0.2
2,783,583	-	flgB	Sama_2318	0.31	-3.4
2,783,583	-	flgB	Sama_2318	0.31	-2.1
2,783,745	-	flgB	Sama_2318	0.71	-2.0
2,783,745	-	flgB	Sama_2318	0.71	-0.2
2,783,747	-	flgB	Sama_2318	0.72	-2.0
2,783,747	-	flgB	Sama_2318	0.72	-3.5
2,783,928	-				-2.3
2,783,928	-				+0.2
2,783,928	-				-0.5
2,784,020	-				+3.2
2,784,071	+				-0.9
2,784,071	+				+0.1
2,784,072	-				+1.0
2,784,072	-				+0.3
2,784,136	-		Sama_2319	0.16	-0.8
2,784,164	-		Sama_2319	0.20	+2.0
2,784,200	+		Sama_2319	0.24	+2.4
2,784,214	+		Sama_2319	0.26	-0.2
2,784,215	-		Sama_2319	0.26	+1.8
2,784,215	-		Sama_2319	0.26	-0.2
2,784,230	+		Sama_2319	0.28	-0.8
2,784,230	+		Sama_2319	0.28	+1.8
2,784,230	+		Sama_2319	0.28	-0.6
2,784,230	+		Sama_2319	0.28	+2.1
2,784,231	-		Sama_2319	0.28	+0.3
2,784,231	-		Sama_2319	0.28	+0.2
2,784,231	-		Sama_2319	0.28	-0.5
2,784,231	-		Sama_2319	0.28	+0.9
2,784,231	-		Sama_2319	0.28	-0.7
2,784,231	-		Sama_2319	0.28	-1.6
2,784,231	-		Sama_2319	0.28	-0.8
2,784,231	-		Sama_2319	0.28	+1.3
2,784,270	+		Sama_2319	0.32	-0.7
2,784,279	-		Sama_2319	0.33	+0.2
2,784,356	-		Sama_2319	0.43	+0.3
2,784,356	-		Sama_2319	0.43	+0.6
2,784,368	+		Sama_2319	0.44	+0.5
2,784,368	+		Sama_2319	0.44	+1.5
2,784,368	+		Sama_2319	0.44	+1.6
2,784,479	-		Sama_2319	0.57	+2.4
2,784,541	+		Sama_2319	0.65	+1.5
2,784,542	-		Sama_2319	0.65	-1.2
2,784,542	-		Sama_2319	0.65	+0.8
2,784,580	+		Sama_2319	0.70	-0.4
2,784,580	+		Sama_2319	0.70	+1.8
2,784,580	+		Sama_2319	0.70	+0.6
2,784,581	-		Sama_2319	0.70	+1.1
2,784,581	-		Sama_2319	0.70	+0.2
2,784,584	+		Sama_2319	0.70	+0.2
2,784,672	-		Sama_2319	0.81	+0.6
2,784,700	+		Sama_2319	0.84	+3.1
2,784,701	-		Sama_2319	0.84	-0.7
2,784,701	-		Sama_2319	0.84	+2.4
2,784,701	-		Sama_2319	0.84	+1.1
2,784,740	-		Sama_2319	0.89	-1.0
2,784,740	-		Sama_2319	0.89	-2.6
2,784,740	-		Sama_2319	0.89	+1.5
2,784,801	-				+0.0
2,784,801	-				-1.2
2,784,856	-				-1.2
2,784,920	+				+2.7
2,784,922	+				-0.5
2,784,923	-				-2.3
2,784,923	-				-1.2
2,784,923	-				+0.1
2,784,942	+				+0.3
2,784,943	-				-1.7
2,784,962	+				+1.8
2,784,962	+				-0.2
2,784,962	+				-1.3
2,784,962	+				+0.2
2,784,962	+				-2.6
2,784,963	-				+0.1
2,784,963	-				-1.6
2,784,963	-				+1.2
2,784,963	-				-2.4
2,784,963	-				+3.7
2,784,965	-				+0.1
2,785,054	-				-2.1
2,785,054	-				-0.3
2,785,117	+		Sama_2320	0.13	-0.8
2,785,175	+		Sama_2320	0.20	+0.2
2,785,175	+		Sama_2320	0.20	-0.2
2,785,209	+		Sama_2320	0.23	-2.2
2,785,296	+		Sama_2320	0.33	+1.6
2,785,371	+		Sama_2320	0.41	-0.2
2,785,372	-		Sama_2320	0.41	-0.4
2,785,372	-		Sama_2320	0.41	-1.8
2,785,429	-		Sama_2320	0.47	-0.6
2,785,429	-		Sama_2320	0.47	-1.0
2,785,434	+		Sama_2320	0.48	+0.6
2,785,435	-		Sama_2320	0.48	+0.5
2,785,516	+		Sama_2320	0.57	-2.0
2,785,517	-		Sama_2320	0.57	-0.5
2,785,517	-		Sama_2320	0.57	-1.6
2,785,517	-		Sama_2320	0.57	+2.3
2,785,521	-		Sama_2320	0.57	-2.3
2,785,527	-		Sama_2320	0.58	-1.4
2,785,527	-		Sama_2320	0.58	-0.1
2,785,555	+		Sama_2320	0.61	+0.4
2,785,623	+		Sama_2320	0.68	-2.1
2,785,625	+		Sama_2320	0.69	-1.6
2,785,638	+		Sama_2320	0.70	-2.3
2,785,786	+		Sama_2320	0.86	-2.0
2,785,787	-		Sama_2320	0.86	-0.9
2,785,787	-		Sama_2320	0.86	-0.2
2,785,813	-		Sama_2320	0.89	+0.8
2,785,813	-		Sama_2320	0.89	+0.2